RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 KALRNO60229 2985 aa6.38□□□□□ -1.39
MSH6-201ENST00000234420 SETXQ7Z333 2677 aaKnown RBP6.36□□□□□ -1.39
MSH6-201ENST00000234420 TRANK1O15050 2925 aa6.36□□□□□ -1.39
MSH6-201ENST00000234420 UNC79Q9P2D8 2635 aa6.36□□□□□ -1.39
MSH6-201ENST00000234420 ITPR2Q14571 2701 aa6.35□□□□□ -1.39
MSH6-201ENST00000234420 DMXL2Q8TDJ6 3036 aa6.35□□□□□ -1.39
MSH6-201ENST00000234420 DSPP15924 2871 aaKnown RBP6.34□□□□□ -1.39
MSH6-201ENST00000234420 COL12A1Q99715 3063 aa6.33□□□□□ -1.4
MSH6-201ENST00000234420 P0C880 135 aa6.33□□□□□ -1.4
MSH6-201ENST00000234420 FRYLO94915 3013 aa6.32□□□□□ -1.4
MSH6-201ENST00000234420 ADGRG4Q8IZF6 3080 aa6.32□□□□□ -1.4
MSH6-201ENST00000234420 SPENQ96T58 3664 aaKnown RBP6.31□□□□□ -1.4
MSH6-201ENST00000234420 NOTCH1P46531 2555 aa6.31□□□□□ -1.4
MSH6-201ENST00000234420 TNP1P09430 55 aa6.29□□□□□ -1.4
MSH6-201ENST00000234420 NSD1Q96L73 2696 aaPredicted RBP6.28□□□□□ -1.4
MSH6-201ENST00000234420 CSMD1Q96PZ7 3565 aa6.27□□□□□ -1.41
MSH6-201ENST00000234420 KRTAP10-10P60014 251 aa6.26□□□□□ -1.41
MSH6-201ENST00000234420 MAP1AP78559 2803 aaPredicted RBP6.26□□□□□ -1.41
MSH6-201ENST00000234420 APCP25054 2843 aa6.26□□□□□ -1.41
MSH6-201ENST00000234420 KMT2BQ9UMN6 2715 aaPredicted RBP6.24□□□□□ -1.41
MSH6-201ENST00000234420 TNRC18O15417 2968 aaPredicted RBP6.24□□□□□ -1.41
MSH6-201ENST00000234420 PP632Q6XCG6 107 aa6.14□□□□□ -1.43
MSH6-201ENST00000234420 NBEAL2Q6ZNJ1 2754 aa6.13□□□□□ -1.43
MSH6-201ENST00000234420 SMG1Q96Q15 3661 aaKnown RBP6.11□□□□□ -1.43
MSH6-201ENST00000234420 ZNF292O60281 2723 aa6.1□□□□□ -1.43
MSH6-201ENST00000234420 GCN1Q92616 2671 aaKnown RBP6.09□□□□□ -1.43
MSH6-201ENST00000234420 IGSF10Q6WRI0 2623 aa6.05□□□□□ -1.44
MSH6-201ENST00000234420 H0YAA0 97 aa6.05□□□□□ -1.44
MSH6-201ENST00000234420 DMXL1Q9Y485 3027 aa6.04□□□□□ -1.44
MSH6-201ENST00000234420 CELSR1Q9NYQ6 3014 aa6.03□□□□□ -1.44
MSH6-201ENST00000234420 DMDP11532 3685 aa6.03□□□□□ -1.44
MSH6-201ENST00000234420 PRO2289Q9P1D8 64 aa6.02□□□□□ -1.45
MSH6-201ENST00000234420 ZFHX3Q15911 3703 aa6.01□□□□□ -1.45
MSH6-201ENST00000234420 UTP20O75691 2785 aaKnown RBP5.99□□□□□ -1.45
MSH6-201ENST00000234420 CHD9Q3L8U1 2897 aa5.99□□□□□ -1.45
MSH6-201ENST00000234420 KRTAP13-2Q52LG2 175 aa5.97□□□□□ -1.45
MSH6-201ENST00000234420 CSMD2Q7Z408 3487 aa5.97□□□□□ -1.45
MSH6-201ENST00000234420 UBR5O95071 2799 aaPredicted RBP5.96□□□□□ -1.45
MSH6-201ENST00000234420 CUBNO60494 3623 aa5.96□□□□□ -1.46
MSH6-201ENST00000234420 TACC2O95359 2948 aa5.94□□□□□ -1.46
MSH6-201ENST00000234420 HIVEP1P15822 2718 aa5.93□□□□□ -1.46
MSH6-201ENST00000234420 KRTAP7-1Q8IUC3 87 aa5.9□□□□□ -1.46
MSH6-201ENST00000234420 MUC3AQ02505 3323 aa5.9□□□□□ -1.47
MSH6-201ENST00000234420 RPS29P62273 56 aaKnown RBP5.9□□□□□ -1.47
MSH6-201ENST00000234420 Q6ZRN7 208 aaPredicted RBP5.88□□□□□ -1.47
MSH6-201ENST00000234420 CRCT1Q9UGL9 99 aa5.88□□□□□ -1.47
MSH6-201ENST00000234420 ITPR1Q14643 2758 aa5.88□□□□□ -1.47
MSH6-201ENST00000234420 XP32Q5T750 250 aa5.85□□□□□ -1.47
MSH6-201ENST00000234420 SVEP1Q4LDE5 3571 aa5.84□□□□□ -1.47
MSH6-201ENST00000234420 TENM1Q9UKZ4 2725 aa5.84□□□□□ -1.48
MSH6-201ENST00000234420 NBEAQ8NFP9 2946 aa5.82□□□□□ -1.48
MSH6-201ENST00000234420 KRTAP13-1Q8IUC0 172 aa5.79□□□□□ -1.48
MSH6-201ENST00000234420 CELSR2Q9HCU4 2923 aa5.78□□□□□ -1.48
MSH6-201ENST00000234420 FLNCQ14315 2725 aa5.71□□□□□ -1.5
MSH6-201ENST00000234420 VPS13CQ709C8 3753 aa5.71□□□□□ -1.5
MSH6-201ENST00000234420 KRTAP21-3Q3LHN1 58 aa5.7□□□□□ -1.5
MSH6-201ENST00000234420 ZANQ9Y493 2812 aa5.68□□□□□ -1.5
MSH6-201ENST00000234420 KRTAP12-2P59991 146 aa5.66□□□□□ -1.5
MSH6-201ENST00000234420 CSMD3Q7Z407 3707 aa5.65□□□□□ -1.5
MSH6-201ENST00000234420 TPRXLQ17RH7 258 aa5.64□□□□□ -1.51
MSH6-201ENST00000234420 VWFP04275 2813 aa5.64□□□□□ -1.51
MSH6-201ENST00000234420 NF1P21359 2839 aa5.61□□□□□ -1.51
MSH6-201ENST00000234420 DCHS2Q6V1P9 2916 aa5.61□□□□□ -1.51
MSH6-201ENST00000234420 PKD1L1Q8TDX9 2849 aa5.6□□□□□ -1.51
MSH6-201ENST00000234420 NIPBLQ6KC79 2804 aaeCLIP5.55□□□□□ -1.522e-6■■□□□ 12.2
MSH6-201ENST00000234420 TENM4Q6N022 2769 aa5.54□□□□□ -1.52
MSH6-201ENST00000234420 TENM2Q9NT68 2774 aa5.52□□□□□ -1.53
MSH6-201ENST00000234420 KRTAP13-4Q3LI77 160 aa5.51□□□□□ -1.53
MSH6-201ENST00000234420 TGP01266 2768 aa5.51□□□□□ -1.53
MSH6-201ENST00000234420 FBN2P35556 2912 aa5.5□□□□□ -1.53
MSH6-201ENST00000234420 BSNQ9UPA5 3926 aa5.49□□□□□ -1.53
MSH6-201ENST00000234420 KRTAP13-3Q3SY46 172 aa5.49□□□□□ -1.53
MSH6-201ENST00000234420 KRTAP15-1Q3LI76 137 aa5.48□□□□□ -1.53
MSH6-201ENST00000234420 INE1O15225 51 aa5.48□□□□□ -1.53
MSH6-201ENST00000234420 KRTAP1-4P0C5Y4 121 aa5.48□□□□□ -1.53
MSH6-201ENST00000234420 MEGF8Q7Z7M0 2845 aa5.47□□□□□ -1.53
MSH6-201ENST00000234420 TENM3Q9P273 2699 aa5.47□□□□□ -1.53
MSH6-201ENST00000234420 KRTAP12-1P59990 96 aa5.45□□□□□ -1.54
MSH6-201ENST00000234420 PDZD2O15018 2839 aa5.44□□□□□ -1.54
MSH6-201ENST00000234420 TRRAPQ9Y4A5 3859 aa5.41□□□□□ -1.54
MSH6-201ENST00000234420 AKAP9Q99996 3911 aa5.41□□□□□ -1.54
MSH6-201ENST00000234420 LORP23490 312 aaPredicted RBP5.37□□□□□ -1.55
MSH6-201ENST00000234420 COL7A1Q02388 2944 aa5.32□□□□□ -1.56
MSH6-201ENST00000234420 MXRA5Q9NR99 2828 aa5.28□□□□□ -1.56
MSH6-201ENST00000234420 SRRM2Q9UQ35 2752 aaKnown RBP5.25□□□□□ -1.57
MSH6-201ENST00000234420 HRNRQ86YZ3 2850 aaPredicted RBP5.19□□□□□ -1.58
MSH6-201ENST00000234420 KRTAP10-6P60371 365 aaPredicted RBP5.14□□□□□ -1.59
MSH6-201ENST00000234420 ZNF469Q96JG9 3925 aaPredicted RBP5.14□□□□□ -1.59
MSH6-201ENST00000234420 KRTAP3-1Q9BYR8 98 aa5.14□□□□□ -1.59
MSH6-201ENST00000234420 KRTAP4-5Q9BYR2 181 aa5.08□□□□□ -1.6
MSH6-201ENST00000234420 FRAS1Q86XX4 4008 aa5.07□□□□□ -1.6
MSH6-201ENST00000234420 KRTAP10-12P60413 245 aa5.06□□□□□ -1.6
MSH6-201ENST00000234420 KRTAP10-5P60370 271 aa5.02□□□□□ -1.61
MSH6-201ENST00000234420 ANK3Q12955 4377 aaKnown RBP4.99□□□□□ -1.61
MSH6-201ENST00000234420 KRTAP8-1Q8IUC2 63 aa4.98□□□□□ -1.61
MSH6-201ENST00000234420 OTOGQ6ZRI0 2925 aa4.96□□□□□ -1.61
MSH6-201ENST00000234420 HUWE1Q7Z6Z7 4374 aaKnown RBP4.96□□□□□ -1.61
MSH6-201ENST00000234420 LYSTQ99698 3801 aa4.92□□□□□ -1.62
MSH6-201ENST00000234420 FBN1P35555 2871 aaKnown RBP4.91□□□□□ -1.62
MSH6-201ENST00000234420 ANK2Q01484 3957 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 193.8 ms