RNA–Protein interactions for RNA: ENST00000229330.8

HCFC2-201, Transcript of host cell factor C2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HCFC2, Length 5,734 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC2-201ENST00000229330 CFAP47Q6ZTR5 3102 aa7.96□□□□□ -1.13
HCFC2-201ENST00000229330 KRTAP10-2P60368 255 aa7.96□□□□□ -1.13
HCFC2-201ENST00000229330 KRTAP10-1P60331 282 aa7.95□□□□□ -1.14
HCFC2-201ENST00000229330 LOC400499M0QZD8 3231 aa7.93□□□□□ -1.14
HCFC2-201ENST00000229330 ZANQ9Y493 2812 aa7.92□□□□□ -1.14
HCFC2-201ENST00000229330 STAB2Q8WWQ8 2551 aa7.9□□□□□ -1.14
HCFC2-201ENST00000229330 R4GN34 69 aa7.9□□□□□ -1.15
HCFC2-201ENST00000229330 ASH1LQ9NR48 2969 aaKnown RBP7.88□□□□□ -1.15
HCFC2-201ENST00000229330 KMT2BQ9UMN6 2715 aaPredicted RBP7.87□□□□□ -1.15
HCFC2-201ENST00000229330 KRTAP13-1Q8IUC0 172 aa7.87□□□□□ -1.15
HCFC2-201ENST00000229330 NDUFAF8A1L188 74 aa7.87□□□□□ -1.15
HCFC2-201ENST00000229330 HRNRQ86YZ3 2850 aaPredicted RBP7.86□□□□□ -1.15
HCFC2-201ENST00000229330 DMBT1Q9UGM3 2413 aaPredicted RBP7.84□□□□□ -1.15
HCFC2-201ENST00000229330 NIPBLQ6KC79 2804 aaeCLIP7.84□□□□□ -1.15
HCFC2-201ENST00000229330 MYO15AQ9UKN7 3530 aa7.84□□□□□ -1.15
HCFC2-201ENST00000229330 CELSR2Q9HCU4 2923 aa7.83□□□□□ -1.16
HCFC2-201ENST00000229330 A8MUU9 505 aa7.81□□□□□ -1.16
HCFC2-201ENST00000229330 Q5VSD8 79 aa7.8□□□□□ -1.16
HCFC2-201ENST00000229330 Q6ZRN7 208 aaPredicted RBP7.8□□□□□ -1.16
HCFC2-201ENST00000229330 M0QZ58 72 aa7.79□□□□□ -1.16
HCFC2-201ENST00000229330 CRYBG3Q68DQ2 2970 aa7.76□□□□□ -1.17
HCFC2-201ENST00000229330 DCHS2Q6V1P9 2916 aa7.75□□□□□ -1.17
HCFC2-201ENST00000229330 TENM4Q6N022 2769 aa7.73□□□□□ -1.17
HCFC2-201ENST00000229330 FLG2Q5D862 2391 aaPredicted RBP7.72□□□□□ -1.17
HCFC2-201ENST00000229330 KRTAP13-2Q52LG2 175 aa7.69□□□□□ -1.18
HCFC2-201ENST00000229330 FBN2P35556 2912 aa7.68□□□□□ -1.18
HCFC2-201ENST00000229330 NF1P21359 2839 aa7.68□□□□□ -1.18
HCFC2-201ENST00000229330 RPS29P62273 56 aaKnown RBP7.68□□□□□ -1.18
HCFC2-201ENST00000229330 RELNP78509 3460 aa7.59□□□□□ -1.19
HCFC2-201ENST00000229330 H0YAA0 97 aa7.59□□□□□ -1.2
HCFC2-201ENST00000229330 KRTAP21-3Q3LHN1 58 aa7.58□□□□□ -1.2
HCFC2-201ENST00000229330 C20orf166-AS1Q96NR2 134 aa7.58□□□□□ -1.2
HCFC2-201ENST00000229330 SEC61BP60468 96 aaKnown RBP7.58□□□□□ -1.2
HCFC2-201ENST00000229330 PLAC4Q8WY50 150 aa7.56□□□□□ -1.2
HCFC2-201ENST00000229330 M0R2T5 61 aa7.55□□□□□ -1.2
HCFC2-201ENST00000229330 MXRA5Q9NR99 2828 aa7.53□□□□□ -1.2
HCFC2-201ENST00000229330 WDFY3Q8IZQ1 3526 aa7.52□□□□□ -1.21
HCFC2-201ENST00000229330 C10orf95Q9H7T3 257 aa7.51□□□□□ -1.21
HCFC2-201ENST00000229330 LAMA5O15230 3695 aa7.47□□□□□ -1.21
HCFC2-201ENST00000229330 DCHS1Q96JQ0 3298 aa7.46□□□□□ -1.21
HCFC2-201ENST00000229330 MUC3AQ02505 3323 aa7.43□□□□□ -1.22
HCFC2-201ENST00000229330 ASPMQ8IZT6 3477 aa7.41□□□□□ -1.22
HCFC2-201ENST00000229330 DMDP11532 3685 aa7.4□□□□□ -1.23
HCFC2-201ENST00000229330 CELSR1Q9NYQ6 3014 aa7.39□□□□□ -1.23
HCFC2-201ENST00000229330 ZFHX4Q86UP3 3567 aa7.38□□□□□ -1.23
HCFC2-201ENST00000229330 P0C880 135 aa7.37□□□□□ -1.23
HCFC2-201ENST00000229330 KRTAP13-3Q3SY46 172 aa7.37□□□□□ -1.23
HCFC2-201ENST00000229330 TENM3Q9P273 2699 aa7.32□□□□□ -1.24
HCFC2-201ENST00000229330 PDZD2O15018 2839 aa7.32□□□□□ -1.24
HCFC2-201ENST00000229330 KRTAP1-4P0C5Y4 121 aa7.31□□□□□ -1.24
HCFC2-201ENST00000229330 PP632Q6XCG6 107 aa7.28□□□□□ -1.24
HCFC2-201ENST00000229330 TENM1Q9UKZ4 2725 aa7.27□□□□□ -1.25
HCFC2-201ENST00000229330 TNP1P09430 55 aa7.27□□□□□ -1.25
HCFC2-201ENST00000229330 TENM2Q9NT68 2774 aa7.22□□□□□ -1.25
HCFC2-201ENST00000229330 NBPF19A0A087WUL8 3843 aa7.18□□□□□ -1.26
HCFC2-201ENST00000229330 OTOGQ6ZRI0 2925 aa7.16□□□□□ -1.26
HCFC2-201ENST00000229330 SMG1Q96Q15 3661 aaKnown RBP7.15□□□□□ -1.26
HCFC2-201ENST00000229330 KRTAP10-8P60410 259 aa7.15□□□□□ -1.27
HCFC2-201ENST00000229330 CSMD1Q96PZ7 3565 aa7.13□□□□□ -1.27
HCFC2-201ENST00000229330 PKD1L1Q8TDX9 2849 aa7.13□□□□□ -1.27
HCFC2-201ENST00000229330 TGP01266 2768 aa7.12□□□□□ -1.27
HCFC2-201ENST00000229330 XP32Q5T750 250 aa7.11□□□□□ -1.27
HCFC2-201ENST00000229330 FBN1P35555 2871 aaKnown RBP7.09□□□□□ -1.27
HCFC2-201ENST00000229330 VWFP04275 2813 aa7.08□□□□□ -1.28
HCFC2-201ENST00000229330 TPRXLQ17RH7 258 aa7.06□□□□□ -1.28
HCFC2-201ENST00000229330 ZFHX3Q15911 3703 aa7.01□□□□□ -1.29
HCFC2-201ENST00000229330 KRTAP12-2P59991 146 aa7.01□□□□□ -1.29
HCFC2-201ENST00000229330 SVEP1Q4LDE5 3571 aa6.99□□□□□ -1.29
HCFC2-201ENST00000229330 A0A1B0GVY2 172 aa6.95□□□□□ -1.3
HCFC2-201ENST00000229330 SPENQ96T58 3664 aaKnown RBP6.95□□□□□ -1.3
HCFC2-201ENST00000229330 ANK3Q12955 4377 aaKnown RBP6.94□□□□□ -1.3
HCFC2-201ENST00000229330 CSMD2Q7Z408 3487 aa6.93□□□□□ -1.3
HCFC2-201ENST00000229330 KRTAP3-1Q9BYR8 98 aa6.91□□□□□ -1.3
HCFC2-201ENST00000229330 KRTAP12-1P59990 96 aa6.89□□□□□ -1.31
HCFC2-201ENST00000229330 BSNQ9UPA5 3926 aa6.85□□□□□ -1.31
HCFC2-201ENST00000229330 CUBNO60494 3623 aa6.8□□□□□ -1.32
HCFC2-201ENST00000229330 KRTAP13-4Q3LI77 160 aa6.78□□□□□ -1.32
HCFC2-201ENST00000229330 TRRAPQ9Y4A5 3859 aa6.77□□□□□ -1.33
HCFC2-201ENST00000229330 KRTAP15-1Q3LI76 137 aa6.77□□□□□ -1.33
HCFC2-201ENST00000229330 KRTAP10-6P60371 365 aaPredicted RBP6.76□□□□□ -1.33
HCFC2-201ENST00000229330 FBN3Q75N90 2809 aa6.68□□□□□ -1.34
HCFC2-201ENST00000229330 SRRM2Q9UQ35 2752 aaKnown RBP6.63□□□□□ -1.35
HCFC2-201ENST00000229330 MEGF8Q7Z7M0 2845 aa6.59□□□□□ -1.36
HCFC2-201ENST00000229330 KRTAP10-10P60014 251 aa6.57□□□□□ -1.36
HCFC2-201ENST00000229330 KRTAP3-2Q9BYR7 98 aa6.53□□□□□ -1.36
HCFC2-201ENST00000229330 VPS13CQ709C8 3753 aa6.49□□□□□ -1.37
HCFC2-201ENST00000229330 COL7A1Q02388 2944 aa6.47□□□□□ -1.37
HCFC2-201ENST00000229330 KRTAP3-3Q9BYR6 98 aa6.47□□□□□ -1.37
HCFC2-201ENST00000229330 HUWE1Q7Z6Z7 4374 aaKnown RBP6.47□□□□□ -1.37
HCFC2-201ENST00000229330 PRO2289Q9P1D8 64 aa6.45□□□□□ -1.38
HCFC2-201ENST00000229330 INE1O15225 51 aa6.39□□□□□ -1.39
HCFC2-201ENST00000229330 MT1HL1P0DM35 61 aa6.36□□□□□ -1.39
HCFC2-201ENST00000229330 ZNF469Q96JG9 3925 aaPredicted RBP6.36□□□□□ -1.39
HCFC2-201ENST00000229330 KRTAP10-4P60372 401 aaPredicted RBP6.31□□□□□ -1.4
HCFC2-201ENST00000229330 AKAP9Q99996 3911 aa6.26□□□□□ -1.41
HCFC2-201ENST00000229330 KRTAP4-5Q9BYR2 181 aa6.21□□□□□ -1.42
HCFC2-201ENST00000229330 DNAH9Q9NYC9 4486 aa6.21□□□□□ -1.42
HCFC2-201ENST00000229330 ALMS1Q8TCU4 4167 aa6.14□□□□□ -1.43
HCFC2-201ENST00000229330 CSMD3Q7Z407 3707 aa6.12□□□□□ -1.43
HCFC2-201ENST00000229330 KRTAP23-1A1A580 65 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms