RNA–Protein interactions for RNA: ENST00000216513.4

SIX4-201, Transcript of SIX homeobox 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIX4, Length 6,285 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-201ENST00000216513 H3BS24 57 aa8.03□□□□□ -1.12
SIX4-201ENST00000216513 LINC00483Q53H64 154 aa8.03□□□□□ -1.12
SIX4-201ENST00000216513 R4GN34 69 aa8.03□□□□□ -1.12
SIX4-201ENST00000216513 Q5W150 140 aa8.02□□□□□ -1.13
SIX4-201ENST00000216513 KRTAP11-1Q8IUC1 163 aa8.01□□□□□ -1.13
SIX4-201ENST00000216513 SMG1Q96Q15 3661 aaKnown RBP7.99□□□□□ -1.13
SIX4-201ENST00000216513 NOTCH2NLQ7Z3S9 236 aa7.96□□□□□ -1.14
SIX4-201ENST00000216513 SVEP1Q4LDE5 3571 aa7.96□□□□□ -1.14
SIX4-201ENST00000216513 LINC00472Q9H8W2 130 aa7.95□□□□□ -1.14
SIX4-201ENST00000216513 CUBNO60494 3623 aa7.94□□□□□ -1.14
SIX4-201ENST00000216513 Q5XG85 94 aa7.92□□□□□ -1.14
SIX4-201ENST00000216513 Q75L30 129 aa7.92□□□□□ -1.14
SIX4-201ENST00000216513 SPATA8Q6RVD6 105 aa7.91□□□□□ -1.14
SIX4-201ENST00000216513 MUC3AQ02505 3323 aa7.91□□□□□ -1.14
SIX4-201ENST00000216513 PLAC4Q8WY50 150 aa7.91□□□□□ -1.14
SIX4-201ENST00000216513 NBPF19A0A087WUL8 3843 aa7.89□□□□□ -1.15
SIX4-201ENST00000216513 DMAC1Q96GE9 116 aa7.89□□□□□ -1.15
SIX4-201ENST00000216513 M0QZ58 72 aa7.88□□□□□ -1.15
SIX4-201ENST00000216513 LINC01558Q9Y6Z2 57 aa7.88□□□□□ -1.15
SIX4-201ENST00000216513 CELSR2Q9HCU4 2923 aa7.86□□□□□ -1.15
SIX4-201ENST00000216513 KRTAP13-2Q52LG2 175 aa7.86□□□□□ -1.15
SIX4-201ENST00000216513 NIPBLQ6KC79 2804 aaeCLIP7.85□□□□□ -1.15
SIX4-201ENST00000216513 Q5VV11 94 aa7.84□□□□□ -1.15
SIX4-201ENST00000216513 KRTAP4-16G5E9R7 235 aaPredicted RBP7.84□□□□□ -1.15
SIX4-201ENST00000216513 C20orf166-AS1Q96NR2 134 aa7.82□□□□□ -1.16
SIX4-201ENST00000216513 ADM2Q7Z4H4 148 aa7.8□□□□□ -1.16
SIX4-201ENST00000216513 SPENQ96T58 3664 aaKnown RBP7.8□□□□□ -1.16
SIX4-201ENST00000216513 DCHS2Q6V1P9 2916 aa7.79□□□□□ -1.16
SIX4-201ENST00000216513 RPS29P62273 56 aaKnown RBP7.79□□□□□ -1.16
SIX4-201ENST00000216513 KRTAP7-1Q8IUC3 87 aa7.79□□□□□ -1.16
SIX4-201ENST00000216513 A0A0A0MQY5 61 aa7.78□□□□□ -1.16
SIX4-201ENST00000216513 ZANQ9Y493 2812 aa7.76□□□□□ -1.17
SIX4-201ENST00000216513 RPL37P61927 97 aaKnown RBP7.75□□□□□ -1.17
SIX4-201ENST00000216513 TENM2Q9NT68 2774 aa7.74□□□□□ -1.17
SIX4-201ENST00000216513 H1FX-AS1Q4G0G2 97 aa7.74□□□□□ -1.17
SIX4-201ENST00000216513 NF1P21359 2839 aa7.73□□□□□ -1.17
SIX4-201ENST00000216513 FBN2P35556 2912 aa7.71□□□□□ -1.17
SIX4-201ENST00000216513 A8MU10 97 aa7.7□□□□□ -1.18
SIX4-201ENST00000216513 ROMO1P60602 79 aa7.67□□□□□ -1.18
SIX4-201ENST00000216513 HRNRQ86YZ3 2850 aaPredicted RBP7.66□□□□□ -1.18
SIX4-201ENST00000216513 KRTAP13-1Q8IUC0 172 aa7.65□□□□□ -1.18
SIX4-201ENST00000216513 A0A1B0GVY2 172 aa7.65□□□□□ -1.19
SIX4-201ENST00000216513 TENM1Q9UKZ4 2725 aa7.64□□□□□ -1.19
SIX4-201ENST00000216513 CSMD2Q7Z408 3487 aa7.63□□□□□ -1.19
SIX4-201ENST00000216513 ASB16-AS1Q495Z4 193 aa7.61□□□□□ -1.19
SIX4-201ENST00000216513 KRTAP29-1A8MX34 341 aaPredicted RBP7.59□□□□□ -1.19
SIX4-201ENST00000216513 A8MUU9 505 aa7.58□□□□□ -1.2
SIX4-201ENST00000216513 MXRA5Q9NR99 2828 aa7.56□□□□□ -1.2
SIX4-201ENST00000216513 TENM3Q9P273 2699 aa7.54□□□□□ -1.2
SIX4-201ENST00000216513 XP32Q5T750 250 aa7.53□□□□□ -1.2
SIX4-201ENST00000216513 ZFHX3Q15911 3703 aa7.53□□□□□ -1.2
SIX4-201ENST00000216513 PKD1L1Q8TDX9 2849 aa7.53□□□□□ -1.2
SIX4-201ENST00000216513 CELSR1Q9NYQ6 3014 aa7.52□□□□□ -1.2
SIX4-201ENST00000216513 KRTAP1-4P0C5Y4 121 aa7.52□□□□□ -1.21
SIX4-201ENST00000216513 TPRXLQ17RH7 258 aa7.47□□□□□ -1.21
SIX4-201ENST00000216513 KRTAP10-10P60014 251 aa7.45□□□□□ -1.22
SIX4-201ENST00000216513 PDZD2O15018 2839 aa7.44□□□□□ -1.22
SIX4-201ENST00000216513 VWFP04275 2813 aa7.35□□□□□ -1.23
SIX4-201ENST00000216513 OTOGQ6ZRI0 2925 aa7.34□□□□□ -1.23
SIX4-201ENST00000216513 KRTAP16-1A8MUX0 517 aa7.34□□□□□ -1.23
SIX4-201ENST00000216513 KRTAP10-8P60410 259 aa7.31□□□□□ -1.24
SIX4-201ENST00000216513 KRTAP13-3Q3SY46 172 aa7.3□□□□□ -1.24
SIX4-201ENST00000216513 KRTAP25-1Q3LHN0 102 aa7.28□□□□□ -1.24
SIX4-201ENST00000216513 BSNQ9UPA5 3926 aa7.26□□□□□ -1.25
SIX4-201ENST00000216513 C10orf95Q9H7T3 257 aa7.25□□□□□ -1.25
SIX4-201ENST00000216513 VPS13CQ709C8 3753 aa7.23□□□□□ -1.25
SIX4-201ENST00000216513 A6NN06 94 aa7.22□□□□□ -1.25
SIX4-201ENST00000216513 FBN1P35555 2871 aaKnown RBP7.21□□□□□ -1.26
SIX4-201ENST00000216513 NDUFAF8A1L188 74 aa7.2□□□□□ -1.26
SIX4-201ENST00000216513 TNP1P09430 55 aa7.15□□□□□ -1.26
SIX4-201ENST00000216513 ANK3Q12955 4377 aaKnown RBP7.14□□□□□ -1.27
SIX4-201ENST00000216513 TGP01266 2768 aa7.14□□□□□ -1.27
SIX4-201ENST00000216513 TRRAPQ9Y4A5 3859 aa7.12□□□□□ -1.27
SIX4-201ENST00000216513 PRO2289Q9P1D8 64 aa7.1□□□□□ -1.27
SIX4-201ENST00000216513 CSMD3Q7Z407 3707 aa7.05□□□□□ -1.28
SIX4-201ENST00000216513 P0C880 135 aa7.02□□□□□ -1.28
SIX4-201ENST00000216513 KRTAP4-5Q9BYR2 181 aa7.01□□□□□ -1.29
SIX4-201ENST00000216513 H0YAA0 97 aa6.98□□□□□ -1.29
SIX4-201ENST00000216513 SRRM2Q9UQ35 2752 aaKnown RBP6.93□□□□□ -1.3
SIX4-201ENST00000216513 FBN3Q75N90 2809 aa6.88□□□□□ -1.31
SIX4-201ENST00000216513 MT1HL1P0DM35 61 aa6.79□□□□□ -1.32
SIX4-201ENST00000216513 ZNF469Q96JG9 3925 aaPredicted RBP6.78□□□□□ -1.32
SIX4-201ENST00000216513 PP632Q6XCG6 107 aa6.74□□□□□ -1.33
SIX4-201ENST00000216513 COL7A1Q02388 2944 aa6.73□□□□□ -1.33
SIX4-201ENST00000216513 KRTAP12-2P59991 146 aa6.7□□□□□ -1.34
SIX4-201ENST00000216513 HUWE1Q7Z6Z7 4374 aaKnown RBP6.68□□□□□ -1.34
SIX4-201ENST00000216513 AKAP9Q99996 3911 aa6.68□□□□□ -1.34
SIX4-201ENST00000216513 ALMS1Q8TCU4 4167 aa6.62□□□□□ -1.35
SIX4-201ENST00000216513 MEGF8Q7Z7M0 2845 aa6.54□□□□□ -1.36
SIX4-201ENST00000216513 KRTAP3-1Q9BYR8 98 aa6.52□□□□□ -1.37
SIX4-201ENST00000216513 KRTAP10-4P60372 401 aaPredicted RBP6.5□□□□□ -1.37
SIX4-201ENST00000216513 KRTAP13-4Q3LI77 160 aa6.44□□□□□ -1.38
SIX4-201ENST00000216513 KRTAP12-1P59990 96 aa6.4□□□□□ -1.39
SIX4-201ENST00000216513 DNAH9Q9NYC9 4486 aa6.38□□□□□ -1.39
SIX4-201ENST00000216513 CRCT1Q9UGL9 99 aa6.35□□□□□ -1.39
SIX4-201ENST00000216513 DNHD1Q96M86 4753 aa6.33□□□□□ -1.4
SIX4-201ENST00000216513 DNAH10Q8IVF4 4471 aa6.28□□□□□ -1.4
SIX4-201ENST00000216513 KRTAP15-1Q3LI76 137 aa6.24□□□□□ -1.41
SIX4-201ENST00000216513 LORP23490 312 aaPredicted RBP6.22□□□□□ -1.41
SIX4-201ENST00000216513 KRTAP10-6P60371 365 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms