RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 REV3LO60673 3130 aa3.58□□□□□ -1.84
VPS13D-201ENST00000011700 KRTAP10-3P60369 221 aa3.58□□□□□ -1.84
VPS13D-201ENST00000011700 UNC80Q8N2C7 3258 aa3.58□□□□□ -1.84
VPS13D-201ENST00000011700 CELSR1Q9NYQ6 3014 aa3.57□□□□□ -1.84
VPS13D-201ENST00000011700 FBN2P35556 2912 aa3.57□□□□□ -1.84
VPS13D-201ENST00000011700 A0A0G2JQZ4 141 aa3.57□□□□□ -1.84
VPS13D-201ENST00000011700 A6NN06 94 aa3.56□□□□□ -1.84
VPS13D-201ENST00000011700 DMXL1Q9Y485 3027 aa3.56□□□□□ -1.84
VPS13D-201ENST00000011700 ADM2Q7Z4H4 148 aa3.55□□□□□ -1.84
VPS13D-201ENST00000011700 MKI67P46013 3256 aaKnown RBP3.55□□□□□ -1.84
VPS13D-201ENST00000011700 HTTP42858 3142 aa3.55□□□□□ -1.84
VPS13D-201ENST00000011700 ADGRG4Q8IZF6 3080 aa3.55□□□□□ -1.84
VPS13D-201ENST00000011700 DNAH14Q0VDD8 3507 aa3.55□□□□□ -1.84
VPS13D-201ENST00000011700 VWFP04275 2813 aa3.54□□□□□ -1.84
VPS13D-201ENST00000011700 TENM2Q9NT68 2774 aa3.53□□□□□ -1.84
VPS13D-201ENST00000011700 PKD1L1Q8TDX9 2849 aa3.53□□□□□ -1.84
VPS13D-201ENST00000011700 ATMQ13315 3056 aa3.53□□□□□ -1.84
VPS13D-201ENST00000011700 PRO2289Q9P1D8 64 aa3.52□□□□□ -1.85
VPS13D-201ENST00000011700 Q8NDZ9 215 aa3.52□□□□□ -1.85
VPS13D-201ENST00000011700 LAMA3Q16787 3333 aa3.52□□□□□ -1.85
VPS13D-201ENST00000011700 FREM2Q5SZK8 3169 aa3.51□□□□□ -1.85
VPS13D-201ENST00000011700 A8MUU9 505 aa3.51□□□□□ -1.85
VPS13D-201ENST00000011700 COL7A1Q02388 2944 aa3.51□□□□□ -1.85
VPS13D-201ENST00000011700 CYSTM1Q9H1C7 97 aa3.51□□□□□ -1.85
VPS13D-201ENST00000011700 HRNRQ86YZ3 2850 aaPredicted RBP3.49□□□□□ -1.85
VPS13D-201ENST00000011700 COL6A3P12111 3177 aa3.47□□□□□ -1.85
VPS13D-201ENST00000011700 C20orf166-AS1Q96NR2 134 aa3.47□□□□□ -1.85
VPS13D-201ENST00000011700 BRCA2P51587 3418 aa3.47□□□□□ -1.85
VPS13D-201ENST00000011700 CELSR3Q9NYQ7 3312 aa3.47□□□□□ -1.85
VPS13D-201ENST00000011700 Q6ZRN7 208 aaPredicted RBP3.47□□□□□ -1.85
VPS13D-201ENST00000011700 KRTAP11-1Q8IUC1 163 aa3.44□□□□□ -1.86
VPS13D-201ENST00000011700 KRTAP13-1Q8IUC0 172 aa3.42□□□□□ -1.86
VPS13D-201ENST00000011700 KRTAP1-5Q9BYS1 174 aa3.42□□□□□ -1.86
VPS13D-201ENST00000011700 NDUFAF8A1L188 74 aa3.41□□□□□ -1.86
VPS13D-201ENST00000011700 CDH23Q9H251 3354 aa3.4□□□□□ -1.86
VPS13D-201ENST00000011700 KRTAP10-1P60331 282 aa3.4□□□□□ -1.87
VPS13D-201ENST00000011700 VCANP13611 3396 aa3.39□□□□□ -1.87
VPS13D-201ENST00000011700 CFAP47Q6ZTR5 3102 aa3.38□□□□□ -1.87
VPS13D-201ENST00000011700 SPTBN5Q9NRC6 3674 aaKnown RBP3.35□□□□□ -1.87
VPS13D-201ENST00000011700 TPRXLQ17RH7 258 aa3.35□□□□□ -1.87
VPS13D-201ENST00000011700 SPEGQ15772 3267 aa3.35□□□□□ -1.87
VPS13D-201ENST00000011700 KRTAP10-2P60368 255 aa3.34□□□□□ -1.87
VPS13D-201ENST00000011700 P0C880 135 aa3.33□□□□□ -1.88
VPS13D-201ENST00000011700 MEGF8Q7Z7M0 2845 aa3.32□□□□□ -1.88
VPS13D-201ENST00000011700 C10orf95Q9H7T3 257 aa3.32□□□□□ -1.88
VPS13D-201ENST00000011700 EYSQ5T1H1 3165 aa3.28□□□□□ -1.88
VPS13D-201ENST00000011700 WDFY3Q8IZQ1 3526 aa3.28□□□□□ -1.88
VPS13D-201ENST00000011700 NBPF19A0A087WUL8 3843 aa3.28□□□□□ -1.88
VPS13D-201ENST00000011700 KRTAP13-2Q52LG2 175 aa3.28□□□□□ -1.88
VPS13D-201ENST00000011700 H0YAA0 97 aa3.27□□□□□ -1.89
VPS13D-201ENST00000011700 FBN1P35555 2871 aaKnown RBP3.27□□□□□ -1.89
VPS13D-201ENST00000011700 MYO15AQ9UKN7 3530 aa3.27□□□□□ -1.89
VPS13D-201ENST00000011700 ZFHX3Q15911 3703 aa3.26□□□□□ -1.89
VPS13D-201ENST00000011700 A8MU10 97 aa3.26□□□□□ -1.89
VPS13D-201ENST00000011700 SZT2Q5T011 3432 aa3.26□□□□□ -1.89
VPS13D-201ENST00000011700 SPENQ96T58 3664 aaKnown RBP3.23□□□□□ -1.89
VPS13D-201ENST00000011700 ASPMQ8IZT6 3477 aa3.22□□□□□ -1.89
VPS13D-201ENST00000011700 XP32Q5T750 250 aa3.21□□□□□ -1.9
VPS13D-201ENST00000011700 KRTAP10-8P60410 259 aa3.2□□□□□ -1.9
VPS13D-201ENST00000011700 FBN3Q75N90 2809 aa3.2□□□□□ -1.9
VPS13D-201ENST00000011700 KRTAP7-1Q8IUC3 87 aa3.18□□□□□ -1.9
VPS13D-201ENST00000011700 INE1O15225 51 aa3.18□□□□□ -1.9
VPS13D-201ENST00000011700 LAMA5O15230 3695 aa3.17□□□□□ -1.9
VPS13D-201ENST00000011700 LOC400499M0QZD8 3231 aa3.17□□□□□ -1.9
VPS13D-201ENST00000011700 KRTAP13-4Q3LI77 160 aa3.16□□□□□ -1.9
VPS13D-201ENST00000011700 OTOGQ6ZRI0 2925 aa3.15□□□□□ -1.91
VPS13D-201ENST00000011700 KRTAP1-4P0C5Y4 121 aa3.15□□□□□ -1.91
VPS13D-201ENST00000011700 ZFHX4Q86UP3 3567 aa3.14□□□□□ -1.91
VPS13D-201ENST00000011700 KRTAP23-1A1A580 65 aa3.13□□□□□ -1.91
VPS13D-201ENST00000011700 AKAP9Q99996 3911 aa3.13□□□□□ -1.91
VPS13D-201ENST00000011700 DCHS1Q96JQ0 3298 aa3.13□□□□□ -1.91
VPS13D-201ENST00000011700 KRTAP13-3Q3SY46 172 aa3.12□□□□□ -1.91
VPS13D-201ENST00000011700 DMDP11532 3685 aa3.11□□□□□ -1.91
VPS13D-201ENST00000011700 RELNP78509 3460 aa3.11□□□□□ -1.91
VPS13D-201ENST00000011700 KRTAP10-10P60014 251 aa3.09□□□□□ -1.92
VPS13D-201ENST00000011700 SMG1Q96Q15 3661 aaKnown RBP3.05□□□□□ -1.92
VPS13D-201ENST00000011700 TRRAPQ9Y4A5 3859 aa3.05□□□□□ -1.92
VPS13D-201ENST00000011700 BSNQ9UPA5 3926 aa3.05□□□□□ -1.92
VPS13D-201ENST00000011700 VPS13CQ709C8 3753 aa3.05□□□□□ -1.92
VPS13D-201ENST00000011700 CSMD1Q96PZ7 3565 aa3□□□□□ -1.93
VPS13D-201ENST00000011700 KRTAP3-3Q9BYR6 98 aa2.98□□□□□ -1.93
VPS13D-201ENST00000011700 KRTAP3-2Q9BYR7 98 aa2.98□□□□□ -1.93
VPS13D-201ENST00000011700 KRTAP12-1P59990 96 aa2.96□□□□□ -1.94
VPS13D-201ENST00000011700 KRTAP12-2P59991 146 aa2.95□□□□□ -1.94
VPS13D-201ENST00000011700 KRTAP15-1Q3LI76 137 aa2.9□□□□□ -1.95
VPS13D-201ENST00000011700 MUC3AQ02505 3323 aa2.89□□□□□ -1.95
VPS13D-201ENST00000011700 SVEP1Q4LDE5 3571 aa2.88□□□□□ -1.95
VPS13D-201ENST00000011700 KRTAP19-4Q3LI73 84 aa2.88□□□□□ -1.95
VPS13D-201ENST00000011700 A0A1B0GVY2 172 aa2.87□□□□□ -1.95
VPS13D-201ENST00000011700 CSMD2Q7Z408 3487 aa2.85□□□□□ -1.95
VPS13D-201ENST00000011700 LYSTQ99698 3801 aa2.84□□□□□ -1.96
VPS13D-201ENST00000011700 KRTAP10-12P60413 245 aa2.81□□□□□ -1.96
VPS13D-201ENST00000011700 CMYA5Q8N3K9 4069 aa2.8□□□□□ -1.96
VPS13D-201ENST00000011700 KRTAP10-6P60371 365 aaPredicted RBP2.8□□□□□ -1.96
VPS13D-201ENST00000011700 CUBNO60494 3623 aa2.79□□□□□ -1.96
VPS13D-201ENST00000011700 CSMD3Q7Z407 3707 aa2.78□□□□□ -1.96
VPS13D-201ENST00000011700 DNAH3Q8TD57 4116 aa2.77□□□□□ -1.97
VPS13D-201ENST00000011700 ALMS1Q8TCU4 4167 aa2.76□□□□□ -1.97
VPS13D-201ENST00000011700 KRTAP3-1Q9BYR8 98 aa2.74□□□□□ -1.97
VPS13D-201ENST00000011700 ZNF469Q96JG9 3925 aaPredicted RBP2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms