RNA–Protein interactions for RNA: ENSMUST00000098548.7

Scn1b-201, Transcript of Sodium channel subunit beta-1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Scn1b, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1b-201ENSMUST00000098548 Gm21983D6RFS9 131 aa17.33■□□□□ 0.37
Scn1b-201ENSMUST00000098548 Olfr235E9Q9Z6 312 aa17.33■□□□□ 0.37
Scn1b-201ENSMUST00000098548 Grcc10O35127 126 aa17.33■□□□□ 0.37
Scn1b-201ENSMUST00000098548 Cdx1P18111 268 aa17.33■□□□□ 0.37
Scn1b-201ENSMUST00000098548 F2rl1P55086 399 aa17.33■□□□□ 0.37
Scn1b-201ENSMUST00000098548 Trav9d-1A0A075B699 112 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Igkv1-133A0A0B4J1H8 120 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Itgb1bp1O35671 200 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Sub1P11031 127 aaKnown RBP17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Bri3P28662 125 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Trav7n-4A0A075B620 113 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Ighv7-4A0A0A6YXL5 121 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 LfngO09010 378 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 P01812 117 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Znf48Q3US17 591 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Chchd5Q9CQP3 110 aa17.32■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Igkv4-59A0A0B4J1I8 117 aa17.31■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Igkv4-71A0A0G2JEH0 117 aa17.31■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm8439G3UWA7 96 aa17.31■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Tnfsf15Q5UBV8 252 aa17.31■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm9964E9Q9S5 144 aa17.3■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Ren1P06281 402 aa17.3■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Rhox4eQ504P9 205 aa17.3■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Slc17a2Q5SZA1 478 aa17.3■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm10118Q8C8J5 116 aa17.3■□□□□ 0.36
Scn1b-201ENSMUST00000098548 ChtopQ9CY57 249 aaKnown RBP17.3■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Trav6-4A0A075B6B4 115 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm33815A0A087WNV3 176 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm29644A0A087WPG2 191 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm12169F2Z474 250 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Olfr1185-ps1F6XP16 303 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Krtap24-1G3X9A2 248 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Ccl6P27784 116 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Wfdc17Q5SSJ1 76 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Il31Q6EAL8 163 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Pygo2Q80V76 405 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Them7Q9DCP4 223 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Plekhb2Q9QZC7 221 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Notch2O35516 2470 aa17.29■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Olfr1419Q7TQS2 343 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Slc31a2Q9CPU9 143 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Trav6d-7A0A075B6B0 112 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm14325A2AW67 498 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Hoxd3P09027 433 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Atp5iQ06185 71 aaKnown RBP17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Rhox4dQ2MDG0 205 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 H2-DMb2Q31099 261 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Gm5464Q3UY29 175 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Cited4Q9WUL8 182 aa17.28■□□□□ 0.36
Scn1b-201ENSMUST00000098548 PolqQ8CGS6 2544 aa17.27■□□□□ 0.36
Scn1b-201ENSMUST00000098548 Olfr1245A0A1L1SQJ6 307 aa17.27■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Rnase1P00683 149 aa17.27■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Tmem177Q8BPE4 311 aa17.27■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Olfr435Q8VFS3 313 aa17.27■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Olfr477Q8VGI6 310 aa17.27■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Dpm3Q9D1Q4 92 aa17.27■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Trav14n-3A0A075B645 120 aa17.26■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Zfp825A0A1Y7VK00 292 aa17.26■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Adcyap1O70176 175 aa17.26■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Sox15P43267 231 aa17.26■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Gm5941Q497P9 117 aa17.26■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Gp9O88186 177 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 PigyP0C1P0 71 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 NdnP25233 325 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Smug1Q6P5C5 279 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Spock3Q8BKV0 436 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Mpv17lQ99MS3 194 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Ufc1Q9CR09 167 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Esm1Q9QYY7 184 aa17.25■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Trav21-dv12A0A075B6C4 109 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Scgb2a2J3KMP9 96 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Gm4133K9J7G6 307 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 AsipQ03288 131 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Zmat4Q8BZ94 229 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Lyg1Q9D7Q0 197 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Cst10Q9JM84 148 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Tex15F8VPN2 2785 aa17.24■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Olfr1320A2AHM8 319 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Rhox7bA6PW38 321 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Ceacam11Q9D0Z8 303 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Cbln1Q9R171 193 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Stab1Q8R4Y4 2571 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Klf12O35738 402 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Gm16686Q3UMN9 131 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Odf3l1Q810P2 275 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Vmn1r202Q8R259 302 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Fxyd4Q9D2W0 88 aa17.23■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Ighv6-3A0A075B5T2 118 aa17.22■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Rps20P60867 119 aaKnown RBP17.22■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Hist3h2bbQ8CGP0 126 aa17.22■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Trpt1Q8K3A2 249 aa17.22■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Rab4bQ91ZR1 213 aa17.22■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Hist3h2baQ9D2U9 126 aa17.22■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Wfdc15bQ9JHY4 80 aa17.22■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Ighv1-80A0A075B5Y3 117 aa17.21■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Tmem262D3Z338 116 aa17.21■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Gm94Q3V2D2 93 aa17.21■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Olfr1381Q7TQT4 311 aa17.21■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Ube2e2Q91W82 201 aa17.21■□□□□ 0.35
Scn1b-201ENSMUST00000098548 Q9CR34 168 aa17.21■□□□□ 0.35
Retrieved 100 of 22,080 RNA–protein pairs in 31.6 ms