Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm25239-201ENSMUST00000174915 86 ntBASIC28,02■■■□□ 2,08
Cdx1P18111 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC26,57■■□□□ 1,84
Cdx1P18111 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26,47■■□□□ 1,83
Cdx1P18111 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC25,94■■□□□ 1,74
Cdx1P18111 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC25,94■■□□□ 1,74
Cdx1P18111 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC25,65■■□□□ 1,7
Cdx1P18111 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25,46■■□□□ 1,67
Cdx1P18111 Psd-208ENSMUST00000224556 2034 ntBASIC25,3■■□□□ 1,64
Cdx1P18111 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25,01■■□□□ 1,59
Cdx1P18111 Gm15042-201ENSMUST00000120212 883 ntBASIC24,38■■□□□ 1,49
Cdx1P18111 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC24,3■■□□□ 1,48
Cdx1P18111 Gm24109-201ENSMUST00000175489 103 ntBASIC24,3■■□□□ 1,48
Cdx1P18111 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC24,27■■□□□ 1,48
Cdx1P18111 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC24,13■■□□□ 1,45
Cdx1P18111 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24,11■■□□□ 1,45
Cdx1P18111 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC24,05■■□□□ 1,44
Cdx1P18111 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC24,05■■□□□ 1,44
Cdx1P18111 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24,03■■□□□ 1,44
Cdx1P18111 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC23,92■■□□□ 1,42
Cdx1P18111 Gm15045-201ENSMUST00000117359 883 ntBASIC23,78■■□□□ 1,4
Cdx1P18111 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23,75■■□□□ 1,39
Cdx1P18111 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC23,75■■□□□ 1,39
Cdx1P18111 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23,72■■□□□ 1,39
Cdx1P18111 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC23,68■■□□□ 1,38
Cdx1P18111 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC23,68■■□□□ 1,38
Cdx1P18111 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23,67■■□□□ 1,38
Cdx1P18111 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23,63■■□□□ 1,37
Cdx1P18111 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC23,62■■□□□ 1,37
Cdx1P18111 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC23,54■■□□□ 1,36
Cdx1P18111 Gm42596-201ENSMUST00000196305 1958 ntBASIC23,5■■□□□ 1,35
Cdx1P18111 Gm23366-201ENSMUST00000175022 89 ntBASIC23,43■■□□□ 1,34
Cdx1P18111 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23,43■■□□□ 1,34
Cdx1P18111 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC23,29■■□□□ 1,32
Cdx1P18111 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC23,18■■□□□ 1,3
Cdx1P18111 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC23,14■■□□□ 1,29
Cdx1P18111 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC23,06■■□□□ 1,28
Cdx1P18111 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC23,02■■□□□ 1,28
Cdx1P18111 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC22,99■■□□□ 1,27
Cdx1P18111 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC22,98■■□□□ 1,27
Cdx1P18111 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC22,79■■□□□ 1,24
Cdx1P18111 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22,74■■□□□ 1,23
Cdx1P18111 AC153911.1-202ENSMUST00000218534 1034 ntBASIC22,71■■□□□ 1,23
Cdx1P18111 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22,65■■□□□ 1,22
Cdx1P18111 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22,64■■□□□ 1,22
Cdx1P18111 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22,64■■□□□ 1,21
Cdx1P18111 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22,62■■□□□ 1,21
Cdx1P18111 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC22,59■■□□□ 1,21
Cdx1P18111 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC22,58■■□□□ 1,2
Cdx1P18111 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22,57■■□□□ 1,2
Cdx1P18111 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC22,56■■□□□ 1,2
Cdx1P18111 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC22,53■■□□□ 1,2
Cdx1P18111 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22,52■■□□□ 1,2
Cdx1P18111 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC22,51■■□□□ 1,19
Cdx1P18111 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC22,5■■□□□ 1,19
Cdx1P18111 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC22,47■■□□□ 1,19
Cdx1P18111 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC22,43■■□□□ 1,18
Cdx1P18111 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC22,43■■□□□ 1,18
Cdx1P18111 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22,43■■□□□ 1,18
Cdx1P18111 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC22,41■■□□□ 1,18
Cdx1P18111 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC22,38■■□□□ 1,17
Cdx1P18111 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC22,36■■□□□ 1,17
Cdx1P18111 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC22,35■■□□□ 1,17
Cdx1P18111 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC22,34■■□□□ 1,17
Cdx1P18111 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC22,33■■□□□ 1,17
Cdx1P18111 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC22,29■■□□□ 1,16
Cdx1P18111 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC22,25■■□□□ 1,15
Cdx1P18111 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC22,24■■□□□ 1,15
Cdx1P18111 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC22,24■■□□□ 1,15
Cdx1P18111 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC22,23■■□□□ 1,15
Cdx1P18111 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC22,18■■□□□ 1,14
Cdx1P18111 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22,18■■□□□ 1,14
Cdx1P18111 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC22,17■■□□□ 1,14
Cdx1P18111 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22,16■■□□□ 1,14
Cdx1P18111 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC22,14■■□□□ 1,13
Cdx1P18111 Gm25238-201ENSMUST00000174914 89 ntBASIC22,13■■□□□ 1,13
Cdx1P18111 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22,13■■□□□ 1,13
Cdx1P18111 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC22,1■■□□□ 1,13
Cdx1P18111 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC22,08■■□□□ 1,13
Cdx1P18111 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC22,06■■□□□ 1,12
Cdx1P18111 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC22,01■■□□□ 1,11
Cdx1P18111 Gm10524-201ENSMUST00000181931 1893 ntBASIC22■■□□□ 1,11
Cdx1P18111 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21,99■■□□□ 1,11
Cdx1P18111 Zxda-201ENSMUST00000117281 2621 ntBASIC21,97■■□□□ 1,11
Cdx1P18111 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21,89■■□□□ 1,1
Cdx1P18111 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC21,86■■□□□ 1,09
Cdx1P18111 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21,85■■□□□ 1,09
Cdx1P18111 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21,84■■□□□ 1,09
Cdx1P18111 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC21,83■■□□□ 1,09
Cdx1P18111 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21,83■■□□□ 1,09
Cdx1P18111 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC21,79■■□□□ 1,08
Cdx1P18111 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC21,79■■□□□ 1,08
Cdx1P18111 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC21,77■■□□□ 1,08
Cdx1P18111 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC21,73■■□□□ 1,07
Cdx1P18111 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21,69■■□□□ 1,06
Cdx1P18111 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC21,69■■□□□ 1,06
Cdx1P18111 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21,68■■□□□ 1,06
Cdx1P18111 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21,66■■□□□ 1,06
Cdx1P18111 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21,64■■□□□ 1,05
Cdx1P18111 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21,63■■□□□ 1,05
Cdx1P18111 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC21,63■■□□□ 1,05
Retrieved 100 of 76,532 protein–RNA pairs in 40,2 ms