Protein–RNA interactions for Protein: A0A075B620

Trav7n-4, T cell receptor alpha variable 7N-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav7n-4A0A075B620 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC26,33■■□□□ 1,8
Trav7n-4A0A075B620 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC25,36■■□□□ 1,65
Trav7n-4A0A075B620 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC25,21■■□□□ 1,63
Trav7n-4A0A075B620 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC24,95■■□□□ 1,58
Trav7n-4A0A075B620 Psd-208ENSMUST00000224556 2034 ntBASIC24,81■■□□□ 1,56
Trav7n-4A0A075B620 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC24,51■■□□□ 1,51
Trav7n-4A0A075B620 Gm25239-201ENSMUST00000174915 86 ntBASIC24,33■■□□□ 1,49
Trav7n-4A0A075B620 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC23,88■■□□□ 1,41
Trav7n-4A0A075B620 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC23,83■■□□□ 1,4
Trav7n-4A0A075B620 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC23,62■■□□□ 1,37
Trav7n-4A0A075B620 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC23,59■■□□□ 1,37
Trav7n-4A0A075B620 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC23,52■■□□□ 1,36
Trav7n-4A0A075B620 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC23,44■■□□□ 1,34
Trav7n-4A0A075B620 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC23,38■■□□□ 1,33
Trav7n-4A0A075B620 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC23,37■■□□□ 1,33
Trav7n-4A0A075B620 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC23,27■■□□□ 1,32
Trav7n-4A0A075B620 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC23,15■■□□□ 1,3
Trav7n-4A0A075B620 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC23,12■■□□□ 1,29
Trav7n-4A0A075B620 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC22,88■■□□□ 1,25
Trav7n-4A0A075B620 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC22,79■■□□□ 1,24
Trav7n-4A0A075B620 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC22,76■■□□□ 1,23
Trav7n-4A0A075B620 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC22,61■■□□□ 1,21
Trav7n-4A0A075B620 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC22,6■■□□□ 1,21
Trav7n-4A0A075B620 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC22,58■■□□□ 1,2
Trav7n-4A0A075B620 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC22,49■■□□□ 1,19
Trav7n-4A0A075B620 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC22,45■■□□□ 1,18
Trav7n-4A0A075B620 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC22,43■■□□□ 1,18
Trav7n-4A0A075B620 Gm42596-201ENSMUST00000196305 1958 ntBASIC22,43■■□□□ 1,18
Trav7n-4A0A075B620 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC22,39■■□□□ 1,18
Trav7n-4A0A075B620 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC22,38■■□□□ 1,17
Trav7n-4A0A075B620 Gm15042-201ENSMUST00000120212 883 ntBASIC22,27■■□□□ 1,16
Trav7n-4A0A075B620 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC22,23■■□□□ 1,15
Trav7n-4A0A075B620 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC22,22■■□□□ 1,15
Trav7n-4A0A075B620 Gm10524-201ENSMUST00000181931 1893 ntBASIC22,17■■□□□ 1,14
Trav7n-4A0A075B620 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC22,16■■□□□ 1,14
Trav7n-4A0A075B620 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC22,13■■□□□ 1,13
Trav7n-4A0A075B620 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22,12■■□□□ 1,13
Trav7n-4A0A075B620 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC22,12■■□□□ 1,13
Trav7n-4A0A075B620 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC22,07■■□□□ 1,12
Trav7n-4A0A075B620 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC22,06■■□□□ 1,12
Trav7n-4A0A075B620 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC22,06■■□□□ 1,12
Trav7n-4A0A075B620 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC22,02■■□□□ 1,12
Trav7n-4A0A075B620 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC22,01■■□□□ 1,11
Trav7n-4A0A075B620 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21,99■■□□□ 1,11
Trav7n-4A0A075B620 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC21,99■■□□□ 1,11
Trav7n-4A0A075B620 Gm15045-201ENSMUST00000117359 883 ntBASIC21,94■■□□□ 1,1
Trav7n-4A0A075B620 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC21,92■■□□□ 1,1
Trav7n-4A0A075B620 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC21,85■■□□□ 1,09
Trav7n-4A0A075B620 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC21,84■■□□□ 1,09
Trav7n-4A0A075B620 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21,83■■□□□ 1,08
Trav7n-4A0A075B620 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC21,75■■□□□ 1,07
Trav7n-4A0A075B620 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC21,75■■□□□ 1,07
Trav7n-4A0A075B620 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC21,7■■□□□ 1,06
Trav7n-4A0A075B620 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC21,64■■□□□ 1,06
Trav7n-4A0A075B620 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21,59■■□□□ 1,05
Trav7n-4A0A075B620 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC21,56■■□□□ 1,04
Trav7n-4A0A075B620 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC21,55■■□□□ 1,04
Trav7n-4A0A075B620 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21,51■■□□□ 1,03
Trav7n-4A0A075B620 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC21,51■■□□□ 1,03
Trav7n-4A0A075B620 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21,5■■□□□ 1,03
Trav7n-4A0A075B620 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21,45■■□□□ 1,02
Trav7n-4A0A075B620 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC21,44■■□□□ 1,02
Trav7n-4A0A075B620 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21,41■■□□□ 1,02
Trav7n-4A0A075B620 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC21,41■■□□□ 1,02
Trav7n-4A0A075B620 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21,41■■□□□ 1,02
Trav7n-4A0A075B620 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC21,38■■□□□ 1,01
Trav7n-4A0A075B620 CT025624.2-201ENSMUST00000223609 1909 ntBASIC21,33■■□□□ 1,01
Trav7n-4A0A075B620 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC21,31■■□□□ 1
Trav7n-4A0A075B620 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC21,3■■□□□ 1
Trav7n-4A0A075B620 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21,29■■□□□ 1
Trav7n-4A0A075B620 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21,28■■□□□ 1
Trav7n-4A0A075B620 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC21,25■□□□□ 0,99
Trav7n-4A0A075B620 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC21,24■□□□□ 0,99
Trav7n-4A0A075B620 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC21,21■□□□□ 0,99
Trav7n-4A0A075B620 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC21,2■□□□□ 0,98
Trav7n-4A0A075B620 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC21,17■□□□□ 0,98
Trav7n-4A0A075B620 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21,12■□□□□ 0,97
Trav7n-4A0A075B620 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC21,1■□□□□ 0,97
Trav7n-4A0A075B620 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21,06■□□□□ 0,96
Trav7n-4A0A075B620 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21,04■□□□□ 0,96
Trav7n-4A0A075B620 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC21,04■□□□□ 0,96
Trav7n-4A0A075B620 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC21,03■□□□□ 0,96
Trav7n-4A0A075B620 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC21,01■□□□□ 0,95
Trav7n-4A0A075B620 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC21,01■□□□□ 0,95
Trav7n-4A0A075B620 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0,95
Trav7n-4A0A075B620 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20,98■□□□□ 0,95
Trav7n-4A0A075B620 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC20,97■□□□□ 0,95
Trav7n-4A0A075B620 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC20,97■□□□□ 0,95
Trav7n-4A0A075B620 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC20,96■□□□□ 0,95
Trav7n-4A0A075B620 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20,95■□□□□ 0,94
Trav7n-4A0A075B620 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC20,94■□□□□ 0,94
Trav7n-4A0A075B620 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC20,94■□□□□ 0,94
Trav7n-4A0A075B620 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20,91■□□□□ 0,94
Trav7n-4A0A075B620 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC20,9■□□□□ 0,94
Trav7n-4A0A075B620 Gnai2-201ENSMUST00000055704 2215 ntAPPRIS P1 TSL 1 (best) BASIC20,81■□□□□ 0,92
Trav7n-4A0A075B620 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC20,81■□□□□ 0,92
Trav7n-4A0A075B620 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20,76■□□□□ 0,91
Trav7n-4A0A075B620 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC20,76■□□□□ 0,91
Trav7n-4A0A075B620 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20,73■□□□□ 0,91
Trav7n-4A0A075B620 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20,72■□□□□ 0,91
Retrieved 100 of 76,532 protein–RNA pairs in 17,7 ms