RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TRBV7-6A0A0J9YX20 115 aa10.32□□□□□ -0.76
CLN3-262ENST00000637699 PCP4L1A6NKN8 68 aa10.32□□□□□ -0.76
CLN3-262ENST00000637699 RPL37P61927 97 aaKnown RBP10.32□□□□□ -0.76
CLN3-262ENST00000637699 C1orf195Q5TG92 126 aa10.31□□□□□ -0.76
CLN3-262ENST00000637699 HSBP1L1C9JCN9 74 aa10.3□□□□□ -0.76
CLN3-262ENST00000637699 A0A1B0GWB2 263 aa10.28□□□□□ -0.76
CLN3-262ENST00000637699 SPATA45Q537H7 98 aa10.28□□□□□ -0.76
CLN3-262ENST00000637699 PAM16Q9Y3D7 125 aa10.28□□□□□ -0.76
CLN3-262ENST00000637699 A0A0G2JQZ4 141 aa10.27□□□□□ -0.77
CLN3-262ENST00000637699 Q5XG85 94 aa10.27□□□□□ -0.77
CLN3-262ENST00000637699 SMIM11BQ8TCY0 68 aa10.27□□□□□ -0.77
CLN3-262ENST00000637699 TRAV13-2A0A0B4J235 113 aa10.26□□□□□ -0.77
CLN3-262ENST00000637699 TEX49A0A1B0GTD5 131 aa10.26□□□□□ -0.77
CLN3-262ENST00000637699 SMIM29Q86T20 159 aa10.25□□□□□ -0.77
CLN3-262ENST00000637699 IGLV5-48A0A075B6I7 105 aa10.22□□□□□ -0.77
CLN3-262ENST00000637699 A4D1N5 150 aa10.22□□□□□ -0.77
CLN3-262ENST00000637699 UQCR10Q9UDW1 63 aa10.22□□□□□ -0.77
CLN3-262ENST00000637699 Q6Q795 121 aa10.18□□□□□ -0.78
CLN3-262ENST00000637699 KRTAP9-7A8MTY7 169 aa10.16□□□□□ -0.78
CLN3-262ENST00000637699 COX8AP10176 69 aa10.16□□□□□ -0.78
CLN3-262ENST00000637699 NHP2Q9NX24 153 aaKnown RBP10.16□□□□□ -0.78
CLN3-262ENST00000637699 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.15□□□□□ -0.78
CLN3-262ENST00000637699 DLEU1O43261 78 aa10.14□□□□□ -0.79
CLN3-262ENST00000637699 TCL1BO95988 128 aa10.14□□□□□ -0.79
CLN3-262ENST00000637699 VAMP3Q15836 100 aa10.14□□□□□ -0.79
CLN3-262ENST00000637699 LINC00575Q6W349 94 aa10.14□□□□□ -0.79
CLN3-262ENST00000637699 C14orf144Q96I85 54 aa10.14□□□□□ -0.79
CLN3-262ENST00000637699 HIST1H4GQ99525 98 aa10.14□□□□□ -0.79
CLN3-262ENST00000637699 USH2AO75445 5202 aa10.14□□□□□ -0.79
CLN3-262ENST00000637699 SSPOA2VEC9 5147 aa10.13□□□□□ -0.79
CLN3-262ENST00000637699 hADV29S1A0JD25 119 aa10.09□□□□□ -0.79
CLN3-262ENST00000637699 M0R143 59 aa10.08□□□□□ -0.8
CLN3-262ENST00000637699 Q6ZQY7 126 aa10.08□□□□□ -0.8
CLN3-262ENST00000637699 ATP11AUNQ6ZP68 121 aa10.07□□□□□ -0.8
CLN3-262ENST00000637699 F8WEM9 126 aa10.05□□□□□ -0.8
CLN3-262ENST00000637699 CFC1P0CG37 223 aa10.05□□□□□ -0.8
CLN3-262ENST00000637699 HIGD1BQ9P298 99 aa10.05□□□□□ -0.8
CLN3-262ENST00000637699 OBSCN-AS1Q96MR7 158 aa10.04□□□□□ -0.8
CLN3-262ENST00000637699 C2orf91Q6ZV80 131 aa10.03□□□□□ -0.8
CLN3-262ENST00000637699 BVES-AS1Q5T3Y7 98 aa10.02□□□□□ -0.81
CLN3-262ENST00000637699 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.01□□□□□ -0.81
CLN3-262ENST00000637699 Q75L30 129 aa10.01□□□□□ -0.81
CLN3-262ENST00000637699 KRTAP9-8Q9BYQ0 159 aa10.01□□□□□ -0.81
CLN3-262ENST00000637699 SNHG12Q9BXW3 62 aa10□□□□□ -0.81
CLN3-262ENST00000637699 RAB37Q96AX2 223 aa9.99□□□□□ -0.81
CLN3-262ENST00000637699 HSD52Q0P140 79 aa9.98□□□□□ -0.81
CLN3-262ENST00000637699 OCIAD2Q56VL3 154 aa9.98□□□□□ -0.81
CLN3-262ENST00000637699 A0A0B4J2C4 111 aa9.97□□□□□ -0.81
CLN3-262ENST00000637699 IGFL1Q6UW32 110 aa9.97□□□□□ -0.81
CLN3-262ENST00000637699 CLEC2BQ92478 149 aa9.97□□□□□ -0.81
CLN3-262ENST00000637699 TRBV7-7A0A0K0K1E9 115 aa9.96□□□□□ -0.82
CLN3-262ENST00000637699 Q6JHZ5 121 aa9.96□□□□□ -0.82
CLN3-262ENST00000637699 FCGBPQ9Y6R7 5405 aaPredicted RBP9.95□□□□□ -0.82
CLN3-262ENST00000637699 COL5A1-AS1Q5SY13 56 aa9.95□□□□□ -0.82
CLN3-262ENST00000637699 CEND1Q8N111 149 aa9.95□□□□□ -0.82
CLN3-262ENST00000637699 BATFQ16520 125 aa9.94□□□□□ -0.82
CLN3-262ENST00000637699 PPDPFLQ8WWR9 84 aa9.94□□□□□ -0.82
CLN3-262ENST00000637699 FAM218AQ96MZ4 157 aa9.94□□□□□ -0.82
CLN3-262ENST00000637699 Q96NJ1 140 aa9.93□□□□□ -0.82
CLN3-262ENST00000637699 H0YGX0 51 aa9.91□□□□□ -0.82
CLN3-262ENST00000637699 H3BUT2 72 aa9.91□□□□□ -0.82
CLN3-262ENST00000637699 FXYD2P54710 66 aa9.91□□□□□ -0.82
CLN3-262ENST00000637699 PRO1854Q9UHT4 67 aa9.9□□□□□ -0.82
CLN3-262ENST00000637699 TRBV20-1A0A075B6N2 111 aa9.86□□□□□ -0.83
CLN3-262ENST00000637699 TMEM238LA0A1B0GVL6 79 aa9.86□□□□□ -0.83
CLN3-262ENST00000637699 A6NJY4 79 aa9.86□□□□□ -0.83
CLN3-262ENST00000637699 LST1O00453 97 aa9.86□□□□□ -0.83
CLN3-262ENST00000637699 SNCGO76070 127 aa9.86□□□□□ -0.83
CLN3-262ENST00000637699 TRIAP1O43715 76 aa9.83□□□□□ -0.84
CLN3-262ENST00000637699 NDUFV3P56181 108 aaKnown RBP9.83□□□□□ -0.84
CLN3-262ENST00000637699 C20orf166-AS1Q96NR2 134 aa9.83□□□□□ -0.84
CLN3-262ENST00000637699 MT2AP02795 61 aa9.82□□□□□ -0.84
CLN3-262ENST00000637699 A0A1B0GX51 115 aa9.81□□□□□ -0.84
CLN3-262ENST00000637699 A8MUU9 505 aa9.8□□□□□ -0.84
CLN3-262ENST00000637699 KRTAP19-1Q8IUB9 90 aa9.8□□□□□ -0.84
CLN3-262ENST00000637699 A0A1B0GV90 55 aa9.79□□□□□ -0.84
CLN3-262ENST00000637699 K7ERJ3 54 aa9.79□□□□□ -0.84
CLN3-262ENST00000637699 TAX1BP3O14907 124 aa9.78□□□□□ -0.84
CLN3-262ENST00000637699 FABP2P12104 132 aa9.78□□□□□ -0.84
CLN3-262ENST00000637699 H3BMG7 143 aa9.77□□□□□ -0.85
CLN3-262ENST00000637699 LCE2BO14633 110 aa9.77□□□□□ -0.85
CLN3-262ENST00000637699 TEN1Q86WV5 123 aa9.77□□□□□ -0.85
CLN3-262ENST00000637699 SS18L2Q9UHA2 77 aa9.77□□□□□ -0.85
CLN3-262ENST00000637699 MT1FP04733 61 aa9.75□□□□□ -0.85
CLN3-262ENST00000637699 FAM236DA0A1B0GTK5 79 aa9.74□□□□□ -0.85
CLN3-262ENST00000637699 C9orf118A6NHY6 69 aa9.74□□□□□ -0.85
CLN3-262ENST00000637699 GHRHP01286 108 aa9.74□□□□□ -0.85
CLN3-262ENST00000637699 FAM236CP0DP71 79 aa9.74□□□□□ -0.85
CLN3-262ENST00000637699 PSMB2P49721 201 aa9.73□□□□□ -0.85
CLN3-262ENST00000637699 A0A087WSZ3 146 aa9.72□□□□□ -0.85
CLN3-262ENST00000637699 MACF1Q9UPN3 7388 aaKnown RBP9.71□□□□□ -0.85
CLN3-262ENST00000637699 DSCR10P59022 87 aa9.71□□□□□ -0.86
CLN3-262ENST00000637699 A0A1W2PNM2 257 aa9.7□□□□□ -0.86
CLN3-262ENST00000637699 KRTAP10-10P60014 251 aa9.7□□□□□ -0.86
CLN3-262ENST00000637699 KRTAP9-3Q9BYQ3 159 aa9.7□□□□□ -0.86
CLN3-262ENST00000637699 SYNE2Q8WXH0 6885 aaKnown RBP9.69□□□□□ -0.86
CLN3-262ENST00000637699 ORMDL1Q9P0S3 153 aa9.69□□□□□ -0.86
CLN3-262ENST00000637699 KRTAP16-1A8MUX0 517 aa9.68□□□□□ -0.86
CLN3-262ENST00000637699 DNAL4O96015 105 aa9.68□□□□□ -0.86
CLN3-262ENST00000637699 A0A1B0GV72 72 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms