RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 Q8N377 158 aa10.45□□□□□ -0.74
CLN3-239ENST00000628023 COX6CP09669 75 aa10.44□□□□□ -0.74
CLN3-239ENST00000628023 FAM218AQ96MZ4 157 aa10.44□□□□□ -0.74
CLN3-239ENST00000628023 F8WEM9 126 aa10.43□□□□□ -0.74
CLN3-239ENST00000628023 PRR4Q16378 134 aa10.42□□□□□ -0.74
CLN3-239ENST00000628023 SMIM29Q86T20 159 aa10.42□□□□□ -0.74
CLN3-239ENST00000628023 SPINK1P00995 79 aa10.41□□□□□ -0.74
CLN3-239ENST00000628023 A0A1B0GX51 115 aa10.4□□□□□ -0.74
CLN3-239ENST00000628023 PPDPFLQ8WWR9 84 aa10.4□□□□□ -0.74
CLN3-239ENST00000628023 CLEC2BQ92478 149 aa10.4□□□□□ -0.74
CLN3-239ENST00000628023 BATFQ16520 125 aa10.39□□□□□ -0.75
CLN3-239ENST00000628023 OCIAD2Q56VL3 154 aa10.39□□□□□ -0.75
CLN3-239ENST00000628023 RETNLBQ9BQ08 111 aa10.39□□□□□ -0.75
CLN3-239ENST00000628023 DNAL4O96015 105 aa10.38□□□□□ -0.75
CLN3-239ENST00000628023 SCGB1C2P0DMR2 95 aa10.38□□□□□ -0.75
CLN3-239ENST00000628023 SNHG12Q9BXW3 62 aa10.38□□□□□ -0.75
CLN3-239ENST00000628023 HRCT1Q6UXD1 115 aa10.37□□□□□ -0.75
CLN3-239ENST00000628023 GHRHP01286 108 aa10.36□□□□□ -0.75
CLN3-239ENST00000628023 RPS29P62273 56 aaKnown RBP10.35□□□□□ -0.75
CLN3-239ENST00000628023 LPAP08519 4548 aa10.34□□□□□ -0.75
CLN3-239ENST00000628023 FABP2P12104 132 aa10.31□□□□□ -0.76
CLN3-239ENST00000628023 LIMD2Q9BT23 127 aa10.31□□□□□ -0.76
CLN3-239ENST00000628023 ORMDL1Q9P0S3 153 aa10.31□□□□□ -0.76
CLN3-239ENST00000628023 A0A0G2JQZ4 141 aa10.3□□□□□ -0.76
CLN3-239ENST00000628023 CD164Q04900 197 aa10.3□□□□□ -0.76
CLN3-239ENST00000628023 Q6JHZ5 121 aa10.3□□□□□ -0.76
CLN3-239ENST00000628023 NAA38Q9BRA0 125 aaKnown RBP10.3□□□□□ -0.76
CLN3-239ENST00000628023 H3BUT2 72 aa10.28□□□□□ -0.76
CLN3-239ENST00000628023 LST1O00453 97 aa10.28□□□□□ -0.76
CLN3-239ENST00000628023 NDUFV3P56181 108 aaKnown RBP10.28□□□□□ -0.76
CLN3-239ENST00000628023 IGLV8-61A0A075B6I0 122 aa10.27□□□□□ -0.77
CLN3-239ENST00000628023 A0A0U1RQV1 116 aa10.27□□□□□ -0.77
CLN3-239ENST00000628023 H3BQ85 93 aa10.27□□□□□ -0.77
CLN3-239ENST00000628023 TRACP01848 142 aa10.27□□□□□ -0.77
CLN3-239ENST00000628023 IGLV7-46A0A075B6I9 117 aa10.26□□□□□ -0.77
CLN3-239ENST00000628023 LYRM7Q5U5X0 104 aa10.25□□□□□ -0.77
CLN3-239ENST00000628023 IGFL1Q6UW32 110 aa10.25□□□□□ -0.77
CLN3-239ENST00000628023 FP248Q71RG6 208 aaPredicted RBP10.25□□□□□ -0.77
CLN3-239ENST00000628023 TMEM256-PLSCR3K7ERE1 68 aa10.23□□□□□ -0.77
CLN3-239ENST00000628023 ATXN8Q156A1 80 aa10.23□□□□□ -0.77
CLN3-239ENST00000628023 H3BMG7 143 aa10.22□□□□□ -0.77
CLN3-239ENST00000628023 A0A1B0GV72 72 aa10.2□□□□□ -0.78
CLN3-239ENST00000628023 TCL1BO95988 128 aa10.2□□□□□ -0.78
CLN3-239ENST00000628023 TRBV7-7A0A0K0K1E9 115 aa10.17□□□□□ -0.78
CLN3-239ENST00000628023 C9orf118A6NHY6 69 aa10.17□□□□□ -0.78
CLN3-239ENST00000628023 TAX1BP3O14907 124 aa10.16□□□□□ -0.78
CLN3-239ENST00000628023 UBE2V1Q13404 147 aa10.16□□□□□ -0.78
CLN3-239ENST00000628023 TPRXLQ17RH7 258 aa10.16□□□□□ -0.78
CLN3-239ENST00000628023 Q5XG85 94 aa10.16□□□□□ -0.78
CLN3-239ENST00000628023 TRBV20-1A0A075B6N2 111 aa10.15□□□□□ -0.78
CLN3-239ENST00000628023 PCP4L1A6NKN8 68 aa10.15□□□□□ -0.78
CLN3-239ENST00000628023 BAALC-AS2P0C853 105 aa10.15□□□□□ -0.78
CLN3-239ENST00000628023 CDIP1Q9H305 208 aa10.14□□□□□ -0.79
CLN3-239ENST00000628023 ANKRD29Q8N6D5 301 aa10.13□□□□□ -0.79
CLN3-239ENST00000628023 A0A1W2PPM0 123 aa10.12□□□□□ -0.79
CLN3-239ENST00000628023 TEN1Q86WV5 123 aa10.12□□□□□ -0.79
CLN3-239ENST00000628023 COL5A1-AS1Q5SY13 56 aa10.11□□□□□ -0.79
CLN3-239ENST00000628023 MUC2Q02817 5179 aa10.1□□□□□ -0.79
CLN3-239ENST00000628023 Q6Q795 121 aa10.1□□□□□ -0.79
CLN3-239ENST00000628023 C1orf195Q5TG92 126 aa10.09□□□□□ -0.79
CLN3-239ENST00000628023 SS18L2Q9UHA2 77 aa10.09□□□□□ -0.79
CLN3-239ENST00000628023 C9JAW5 83 aa10.08□□□□□ -0.8
CLN3-239ENST00000628023 RBM3P98179 157 aaKnown RBP10.08□□□□□ -0.8
CLN3-239ENST00000628023 KRTAP13-3Q3SY46 172 aa10.08□□□□□ -0.8
CLN3-239ENST00000628023 DSCR8Q96T75 97 aa10.07□□□□□ -0.8
CLN3-239ENST00000628023 A0A087WSZ3 146 aa10.06□□□□□ -0.8
CLN3-239ENST00000628023 A0A1W2PNM2 257 aa10.05□□□□□ -0.8
CLN3-239ENST00000628023 ASB16-AS1Q495Z4 193 aa10.05□□□□□ -0.8
CLN3-239ENST00000628023 CCKP06307 115 aa10.04□□□□□ -0.8
CLN3-239ENST00000628023 VPS25Q9BRG1 176 aa10.03□□□□□ -0.8
CLN3-239ENST00000628023 SPCS1Q9Y6A9 102 aa10.03□□□□□ -0.8
CLN3-239ENST00000628023 TRBV7-4A0A0J9YYF1 115 aa10.02□□□□□ -0.81
CLN3-239ENST00000628023 JMJD7-PLA2G4BH0Y9G9 81 aa10.01□□□□□ -0.81
CLN3-239ENST00000628023 C9orf92A6NGG3 77 aa9.99□□□□□ -0.81
CLN3-239ENST00000628023 MTURNQ8N3F0 131 aa9.99□□□□□ -0.81
CLN3-239ENST00000628023 H3BT86 120 aa9.98□□□□□ -0.81
CLN3-239ENST00000628023 C14orf132Q9NPU4 83 aa9.94□□□□□ -0.82
CLN3-239ENST00000628023 XP32Q5T750 250 aa9.93□□□□□ -0.82
CLN3-239ENST00000628023 LCE2AQ5TA79 106 aaPredicted RBP9.93□□□□□ -0.82
CLN3-239ENST00000628023 K7EP34 96 aa9.92□□□□□ -0.82
CLN3-239ENST00000628023 PDE6GP18545 87 aa9.92□□□□□ -0.82
CLN3-239ENST00000628023 LOC110117498A0A087WWA1 95 aa9.91□□□□□ -0.82
CLN3-239ENST00000628023 Q6ZQT0 140 aa9.91□□□□□ -0.82
CLN3-239ENST00000628023 SIGMAR1Q99720 223 aa9.91□□□□□ -0.82
CLN3-239ENST00000628023 KRTAP9-2Q9BYQ4 174 aa9.91□□□□□ -0.82
CLN3-239ENST00000628023 C21orf62-AS1Q17RA5 79 aa9.89□□□□□ -0.83
CLN3-239ENST00000628023 OBSCN-AS1Q96MR7 158 aa9.89□□□□□ -0.83
CLN3-239ENST00000628023 Q96NJ1 140 aa9.89□□□□□ -0.83
CLN3-239ENST00000628023 SEC61BP60468 96 aaKnown RBP9.87□□□□□ -0.83
CLN3-239ENST00000628023 GTF2H5Q6ZYL4 71 aa9.87□□□□□ -0.83
CLN3-239ENST00000628023 IGKV4-1P06312 121 aa9.86□□□□□ -0.83
CLN3-239ENST00000628023 FAT4Q6V0I7 4981 aa9.85□□□□□ -0.83
CLN3-239ENST00000628023 A0A1B0GW54 56 aa9.83□□□□□ -0.84
CLN3-239ENST00000628023 DEFB116Q30KQ4 102 aa9.83□□□□□ -0.84
CLN3-239ENST00000628023 LINC00472Q9H8W2 130 aa9.82□□□□□ -0.84
CLN3-239ENST00000628023 SMCPP49901 116 aaPredicted RBP9.81□□□□□ -0.84
CLN3-239ENST00000628023 PRO0461Q9UI25 63 aa9.8□□□□□ -0.84
CLN3-239ENST00000628023 MUC17Q685J3 4493 aa9.8□□□□□ -0.84
CLN3-239ENST00000628023 J3KT08 172 aa9.76□□□□□ -0.85
CLN3-239ENST00000628023 RPL37P61927 97 aaKnown RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms