RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 HSD52Q0P140 79 aa11.02□□□□□ -0.65
UPF1-212ENST00000601689 GHRHP01286 108 aa11.01□□□□□ -0.65
UPF1-212ENST00000601689 LINC01547P58512 204 aaPredicted RBP11.01□□□□□ -0.65
UPF1-212ENST00000601689 CD164Q04900 197 aa11.01□□□□□ -0.65
UPF1-212ENST00000601689 HRCT1Q6UXD1 115 aa11.01□□□□□ -0.65
UPF1-212ENST00000601689 Q8N377 158 aa11.01□□□□□ -0.65
UPF1-212ENST00000601689 PPDPFLQ8WWR9 84 aa11□□□□□ -0.65
UPF1-212ENST00000601689 SMIM29Q86T20 159 aa10.99□□□□□ -0.65
UPF1-212ENST00000601689 OCIAD2Q56VL3 154 aa10.98□□□□□ -0.65
UPF1-212ENST00000601689 FXYD2P54710 66 aa10.97□□□□□ -0.65
UPF1-212ENST00000601689 SNHG12Q9BXW3 62 aa10.97□□□□□ -0.65
UPF1-212ENST00000601689 A0A1B0GX51 115 aa10.93□□□□□ -0.66
UPF1-212ENST00000601689 COX6CP09669 75 aa10.93□□□□□ -0.66
UPF1-212ENST00000601689 Q6JHZ5 121 aa10.93□□□□□ -0.66
UPF1-212ENST00000601689 PSMB2P49721 201 aa10.92□□□□□ -0.66
UPF1-212ENST00000601689 TCL1BO95988 128 aa10.89□□□□□ -0.67
UPF1-212ENST00000601689 DNAL4O96015 105 aa10.88□□□□□ -0.67
UPF1-212ENST00000601689 Q5XG85 94 aa10.86□□□□□ -0.67
UPF1-212ENST00000601689 CLEC2BQ92478 149 aa10.86□□□□□ -0.67
UPF1-212ENST00000601689 H3BQ85 93 aa10.85□□□□□ -0.67
UPF1-212ENST00000601689 TRIAP1O43715 76 aa10.85□□□□□ -0.67
UPF1-212ENST00000601689 SMIM6P0DI80 62 aa10.85□□□□□ -0.67
UPF1-212ENST00000601689 KRTAP13-3Q3SY46 172 aa10.85□□□□□ -0.67
UPF1-212ENST00000601689 IGLV8-61A0A075B6I0 122 aa10.84□□□□□ -0.67
UPF1-212ENST00000601689 FAM218AQ96MZ4 157 aa10.83□□□□□ -0.68
UPF1-212ENST00000601689 K7ERJ3 54 aa10.82□□□□□ -0.68
UPF1-212ENST00000601689 RNF213Q63HN8 5207 aa10.81□□□□□ -0.68
UPF1-212ENST00000601689 A0A0G2JQZ4 141 aa10.81□□□□□ -0.68
UPF1-212ENST00000601689 M0R143 59 aa10.81□□□□□ -0.68
UPF1-212ENST00000601689 FABP2P12104 132 aa10.81□□□□□ -0.68
UPF1-212ENST00000601689 IGFL1Q6UW32 110 aa10.81□□□□□ -0.68
UPF1-212ENST00000601689 A0A0U1RQV1 116 aa10.8□□□□□ -0.68
UPF1-212ENST00000601689 SCGB1C2P0DMR2 95 aa10.8□□□□□ -0.68
UPF1-212ENST00000601689 NDUFV3P56181 108 aaKnown RBP10.8□□□□□ -0.68
UPF1-212ENST00000601689 ORMDL1Q9P0S3 153 aa10.79□□□□□ -0.68
UPF1-212ENST00000601689 TRBV7-7A0A0K0K1E9 115 aa10.76□□□□□ -0.69
UPF1-212ENST00000601689 TSTD3H0UI37 97 aa10.76□□□□□ -0.69
UPF1-212ENST00000601689 SEC61BP60468 96 aaKnown RBP10.76□□□□□ -0.69
UPF1-212ENST00000601689 H3BMG7 143 aa10.75□□□□□ -0.69
UPF1-212ENST00000601689 H3BUT2 72 aa10.75□□□□□ -0.69
UPF1-212ENST00000601689 TMEM256-PLSCR3K7ERE1 68 aa10.75□□□□□ -0.69
UPF1-212ENST00000601689 C1orf195Q5TG92 126 aa10.74□□□□□ -0.69
UPF1-212ENST00000601689 SS18L2Q9UHA2 77 aa10.73□□□□□ -0.69
UPF1-212ENST00000601689 ASB16-AS1Q495Z4 193 aa10.71□□□□□ -0.69
UPF1-212ENST00000601689 TEN1Q86WV5 123 aa10.71□□□□□ -0.69
UPF1-212ENST00000601689 TRACP01848 142 aa10.69□□□□□ -0.7
UPF1-212ENST00000601689 C9orf92A6NGG3 77 aa10.68□□□□□ -0.7
UPF1-212ENST00000601689 LST1O00453 97 aa10.68□□□□□ -0.7
UPF1-212ENST00000601689 Q6Q795 121 aa10.68□□□□□ -0.7
UPF1-212ENST00000601689 XP32Q5T750 250 aa10.67□□□□□ -0.7
UPF1-212ENST00000601689 ANKRD29Q8N6D5 301 aa10.66□□□□□ -0.7
UPF1-212ENST00000601689 UBE2V1Q13404 147 aa10.65□□□□□ -0.7
UPF1-212ENST00000601689 LYRM7Q5U5X0 104 aa10.63□□□□□ -0.71
UPF1-212ENST00000601689 MUC17Q685J3 4493 aa10.62□□□□□ -0.71
UPF1-212ENST00000601689 LOC105371267A0A1B0GV96 52 aa10.62□□□□□ -0.71
UPF1-212ENST00000601689 A0A087WSZ3 146 aa10.6□□□□□ -0.71
UPF1-212ENST00000601689 ATXN8Q156A1 80 aa10.6□□□□□ -0.71
UPF1-212ENST00000601689 MUC2Q02817 5179 aa10.59□□□□□ -0.71
UPF1-212ENST00000601689 A0A1B0GV72 72 aa10.58□□□□□ -0.72
UPF1-212ENST00000601689 BATFQ16520 125 aa10.58□□□□□ -0.72
UPF1-212ENST00000601689 DSCR8Q96T75 97 aa10.57□□□□□ -0.72
UPF1-212ENST00000601689 TRBV7-4A0A0J9YYF1 115 aa10.56□□□□□ -0.72
UPF1-212ENST00000601689 BAALC-AS2P0C853 105 aa10.56□□□□□ -0.72
UPF1-212ENST00000601689 RBM3P98179 157 aaKnown RBP10.56□□□□□ -0.72
UPF1-212ENST00000601689 A0A1W2PNM2 257 aa10.53□□□□□ -0.72
UPF1-212ENST00000601689 CCKP06307 115 aa10.53□□□□□ -0.72
UPF1-212ENST00000601689 NAA38Q9BRA0 125 aaKnown RBP10.52□□□□□ -0.73
UPF1-212ENST00000601689 TRBV20-1A0A075B6N2 111 aa10.51□□□□□ -0.73
UPF1-212ENST00000601689 C21orf62-AS1Q17RA5 79 aa10.5□□□□□ -0.73
UPF1-212ENST00000601689 VPS25Q9BRG1 176 aa10.5□□□□□ -0.73
UPF1-212ENST00000601689 C9JAW5 83 aa10.48□□□□□ -0.73
UPF1-212ENST00000601689 JMJD7-PLA2G4BH0Y9G9 81 aa10.48□□□□□ -0.73
UPF1-212ENST00000601689 PCOTHQ58A44 107 aa10.48□□□□□ -0.73
UPF1-212ENST00000601689 RPL37P61927 97 aaKnown RBP10.47□□□□□ -0.73
UPF1-212ENST00000601689 OBSCN-AS1Q96MR7 158 aa10.46□□□□□ -0.73
UPF1-212ENST00000601689 SIGMAR1Q99720 223 aa10.45□□□□□ -0.74
UPF1-212ENST00000601689 C9orf118A6NHY6 69 aa10.42□□□□□ -0.74
UPF1-212ENST00000601689 IGKV4-1P06312 121 aa10.42□□□□□ -0.74
UPF1-212ENST00000601689 Q96NJ1 140 aa10.42□□□□□ -0.74
UPF1-212ENST00000601689 PDE6GP18545 87 aa10.41□□□□□ -0.74
UPF1-212ENST00000601689 ATP11AUNQ6ZP68 121 aa10.41□□□□□ -0.74
UPF1-212ENST00000601689 Q75L30 129 aa10.38□□□□□ -0.75
UPF1-212ENST00000601689 A0A1B0GW54 56 aa10.37□□□□□ -0.75
UPF1-212ENST00000601689 A0A1W2PPM0 123 aa10.36□□□□□ -0.75
UPF1-212ENST00000601689 TAX1BP3O14907 124 aa10.35□□□□□ -0.75
UPF1-212ENST00000601689 LINC00313P59037 77 aa10.35□□□□□ -0.75
UPF1-212ENST00000601689 KRTAP4-1Q9BYQ7 146 aa10.35□□□□□ -0.75
UPF1-212ENST00000601689 LINC00472Q9H8W2 130 aa10.34□□□□□ -0.75
UPF1-212ENST00000601689 LOC110117498A0A087WWA1 95 aa10.33□□□□□ -0.76
UPF1-212ENST00000601689 J3KT08 172 aa10.33□□□□□ -0.76
UPF1-212ENST00000601689 FAT4Q6V0I7 4981 aa10.32□□□□□ -0.76
UPF1-212ENST00000601689 H3BT86 120 aa10.32□□□□□ -0.76
UPF1-212ENST00000601689 DEFB116Q30KQ4 102 aa10.32□□□□□ -0.76
UPF1-212ENST00000601689 Q6ZQT0 140 aa10.31□□□□□ -0.76
UPF1-212ENST00000601689 DSCR10P59022 87 aa10.3□□□□□ -0.76
UPF1-212ENST00000601689 COL5A1-AS1Q5SY13 56 aa10.3□□□□□ -0.76
UPF1-212ENST00000601689 C14orf132Q9NPU4 83 aa10.29□□□□□ -0.76
UPF1-212ENST00000601689 NDUFB1O75438 58 aa10.28□□□□□ -0.76
UPF1-212ENST00000601689 C20orf166-AS1Q96NR2 134 aa10.28□□□□□ -0.76
UPF1-212ENST00000601689 IGHV6-1A0A0B4J1U7 121 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms