RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 H0YGX0 51 aa5.41□□□□□ -1.54
VPS35-211ENST00000569950 CRYGAP11844 174 aa5.41□□□□□ -1.54
VPS35-211ENST00000569950 VAMP3Q15836 100 aa5.41□□□□□ -1.54
VPS35-211ENST00000569950 Q1RN00 199 aa5.41□□□□□ -1.54
VPS35-211ENST00000569950 Q6ZQY7 126 aa5.41□□□□□ -1.54
VPS35-211ENST00000569950 BATFQ16520 125 aa5.4□□□□□ -1.54
VPS35-211ENST00000569950 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.39□□□□□ -1.55
VPS35-211ENST00000569950 TEX49A0A1B0GTD5 131 aa5.38□□□□□ -1.55
VPS35-211ENST00000569950 A0A1B0GX51 115 aa5.38□□□□□ -1.55
VPS35-211ENST00000569950 PCP4L1A6NKN8 68 aa5.38□□□□□ -1.55
VPS35-211ENST00000569950 LST1O00453 97 aa5.38□□□□□ -1.55
VPS35-211ENST00000569950 DEFB105AQ8NG35 78 aa5.38□□□□□ -1.55
VPS35-211ENST00000569950 TCL1BO95988 128 aa5.37□□□□□ -1.55
VPS35-211ENST00000569950 PSMB2P49721 201 aa5.37□□□□□ -1.55
VPS35-211ENST00000569950 TYMSOSQ8TAI1 123 aa5.37□□□□□ -1.55
VPS35-211ENST00000569950 IGLV9-49A0A0B4J1Y8 123 aa5.36□□□□□ -1.55
VPS35-211ENST00000569950 C9orf118A6NHY6 69 aa5.36□□□□□ -1.55
VPS35-211ENST00000569950 SLC25A20O43772 301 aa5.36□□□□□ -1.55
VPS35-211ENST00000569950 MOBPQ13875 183 aa5.36□□□□□ -1.55
VPS35-211ENST00000569950 IGLV8-61A0A075B6I0 122 aa5.35□□□□□ -1.55
VPS35-211ENST00000569950 A0A0G2JQZ4 141 aa5.35□□□□□ -1.55
VPS35-211ENST00000569950 H3BUT2 72 aa5.35□□□□□ -1.55
VPS35-211ENST00000569950 GHRHP01286 108 aa5.35□□□□□ -1.55
VPS35-211ENST00000569950 TRACP01848 142 aa5.35□□□□□ -1.55
VPS35-211ENST00000569950 C21orf62-AS1Q17RA5 79 aa5.35□□□□□ -1.55
VPS35-211ENST00000569950 Q8NBF4 154 aa5.35□□□□□ -1.55
VPS35-211ENST00000569950 SSBP3-AS1Q7Z2R9 100 aa5.34□□□□□ -1.55
VPS35-211ENST00000569950 PPDPFLQ8WWR9 84 aa5.34□□□□□ -1.55
VPS35-211ENST00000569950 A0A1W2PPM0 123 aa5.33□□□□□ -1.56
VPS35-211ENST00000569950 COX6CP09669 75 aa5.33□□□□□ -1.56
VPS35-211ENST00000569950 LINC00304Q8N9R0 145 aa5.33□□□□□ -1.56
VPS35-211ENST00000569950 OCIAD2Q56VL3 154 aa5.32□□□□□ -1.56
VPS35-211ENST00000569950 COL5A1-AS1Q5SY13 56 aa5.32□□□□□ -1.56
VPS35-211ENST00000569950 LAMTOR3Q9UHA4 124 aa5.32□□□□□ -1.56
VPS35-211ENST00000569950 SCGB1C2P0DMR2 95 aa5.31□□□□□ -1.56
VPS35-211ENST00000569950 LRP2P98164 4655 aa5.3□□□□□ -1.56
VPS35-211ENST00000569950 NDUFV3P56181 108 aaKnown RBP5.3□□□□□ -1.56
VPS35-211ENST00000569950 C9orf153Q5TBE3 101 aa5.3□□□□□ -1.56
VPS35-211ENST00000569950 IGFL1Q6UW32 110 aa5.3□□□□□ -1.56
VPS35-211ENST00000569950 ORMDL1Q9P0S3 153 aa5.3□□□□□ -1.56
VPS35-211ENST00000569950 LPAP08519 4548 aa5.29□□□□□ -1.56
VPS35-211ENST00000569950 ATXN8Q156A1 80 aa5.29□□□□□ -1.56
VPS35-211ENST00000569950 TRBV20-1A0A075B6N2 111 aa5.28□□□□□ -1.56
VPS35-211ENST00000569950 DNAL4O96015 105 aa5.27□□□□□ -1.57
VPS35-211ENST00000569950 SPINK1P00995 79 aa5.27□□□□□ -1.57
VPS35-211ENST00000569950 RPS29P62273 56 aaKnown RBP5.27□□□□□ -1.57
VPS35-211ENST00000569950 CD164Q04900 197 aa5.27□□□□□ -1.57
VPS35-211ENST00000569950 UBE2V1Q13404 147 aa5.27□□□□□ -1.57
VPS35-211ENST00000569950 SPAG11AQ6PDA7 123 aa5.27□□□□□ -1.57
VPS35-211ENST00000569950 H3BMG7 143 aa5.26□□□□□ -1.57
VPS35-211ENST00000569950 SNCGO76070 127 aa5.26□□□□□ -1.57
VPS35-211ENST00000569950 BAALC-AS2P0C853 105 aa5.26□□□□□ -1.57
VPS35-211ENST00000569950 FABP2P12104 132 aa5.26□□□□□ -1.57
VPS35-211ENST00000569950 PRO0461Q9UI25 63 aa5.26□□□□□ -1.57
VPS35-211ENST00000569950 A0A1W2PNM2 257 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 C9JAW5 83 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 TMEM256-PLSCR3K7ERE1 68 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 LYRM7Q5U5X0 104 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 Q6JHZ5 121 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 MTURNQ8N3F0 131 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 RETNLBQ9BQ08 111 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 SPCS1Q9Y6A9 102 aa5.25□□□□□ -1.57
VPS35-211ENST00000569950 TRBV7-4A0A0J9YYF1 115 aa5.24□□□□□ -1.57
VPS35-211ENST00000569950 H3BQ85 93 aa5.24□□□□□ -1.57
VPS35-211ENST00000569950 K7EP34 96 aa5.24□□□□□ -1.57
VPS35-211ENST00000569950 LCE3BQ5TA77 95 aa5.24□□□□□ -1.57
VPS35-211ENST00000569950 Q5XG85 94 aa5.24□□□□□ -1.57
VPS35-211ENST00000569950 HRCT1Q6UXD1 115 aa5.24□□□□□ -1.57
VPS35-211ENST00000569950 OBSCN-AS1Q96MR7 158 aa5.24□□□□□ -1.57
VPS35-211ENST00000569950 A0A1B0GV72 72 aa5.23□□□□□ -1.57
VPS35-211ENST00000569950 F8WEM9 126 aa5.23□□□□□ -1.57
VPS35-211ENST00000569950 Q6Q795 121 aa5.23□□□□□ -1.57
VPS35-211ENST00000569950 ANKRD29Q8N6D5 301 aa5.23□□□□□ -1.57
VPS35-211ENST00000569950 KRTAP4-12Q9BQ66 201 aa5.23□□□□□ -1.57
VPS35-211ENST00000569950 TRBV7-7A0A0K0K1E9 115 aa5.22□□□□□ -1.57
VPS35-211ENST00000569950 H3BT86 120 aa5.2□□□□□ -1.58
VPS35-211ENST00000569950 ASB16-AS1Q495Z4 193 aa5.19□□□□□ -1.58
VPS35-211ENST00000569950 C1orf195Q5TG92 126 aa5.19□□□□□ -1.58
VPS35-211ENST00000569950 TEN1Q86WV5 123 aa5.19□□□□□ -1.58
VPS35-211ENST00000569950 RBM3P98179 157 aaKnown RBP5.18□□□□□ -1.58
VPS35-211ENST00000569950 Q6ZQT0 140 aa5.18□□□□□ -1.58
VPS35-211ENST00000569950 Q96NJ1 140 aa5.18□□□□□ -1.58
VPS35-211ENST00000569950 UBR4Q5T4S7 5183 aa5.17□□□□□ -1.58
VPS35-211ENST00000569950 LOC110117498A0A087WWA1 95 aa5.17□□□□□ -1.58
VPS35-211ENST00000569950 LIMD2Q9BT23 127 aa5.17□□□□□ -1.58
VPS35-211ENST00000569950 KRTAP9-9Q9BYP9 154 aa5.17□□□□□ -1.58
VPS35-211ENST00000569950 KRTAP9-4Q9BYQ2 154 aa5.17□□□□□ -1.58
VPS35-211ENST00000569950 C14orf132Q9NPU4 83 aa5.17□□□□□ -1.58
VPS35-211ENST00000569950 CCKP06307 115 aa5.16□□□□□ -1.58
VPS35-211ENST00000569950 PRR4Q16378 134 aa5.16□□□□□ -1.58
VPS35-211ENST00000569950 KRTAP13-3Q3SY46 172 aa5.16□□□□□ -1.58
VPS35-211ENST00000569950 FP248Q71RG6 208 aaPredicted RBP5.16□□□□□ -1.58
VPS35-211ENST00000569950 IGLV7-46A0A075B6I9 117 aa5.15□□□□□ -1.59
VPS35-211ENST00000569950 A0A087WSZ3 146 aa5.15□□□□□ -1.59
VPS35-211ENST00000569950 A0A1B0GV90 55 aa5.15□□□□□ -1.59
VPS35-211ENST00000569950 JMJD7-PLA2G4BH0Y9G9 81 aa5.15□□□□□ -1.59
VPS35-211ENST00000569950 KRTAP4-8A0A0G2JLE6 195 aa5.14□□□□□ -1.59
VPS35-211ENST00000569950 TPRXLQ17RH7 258 aa5.14□□□□□ -1.59
VPS35-211ENST00000569950 KRTAP19-1Q8IUB9 90 aa5.14□□□□□ -1.59
VPS35-211ENST00000569950 GTF2H5Q6ZYL4 71 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms