RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 LINC01547P58512 204 aaPredicted RBP7.43□□□□□ -1.22
CLK3-224ENST00000568605 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.43□□□□□ -1.22
CLK3-224ENST00000568605 PPDPFLQ8WWR9 84 aa7.42□□□□□ -1.22
CLK3-224ENST00000568605 UBR4Q5T4S7 5183 aa7.41□□□□□ -1.22
CLK3-224ENST00000568605 LPAP08519 4548 aa7.41□□□□□ -1.22
CLK3-224ENST00000568605 IGLV7-46A0A075B6I9 117 aa7.41□□□□□ -1.22
CLK3-224ENST00000568605 CD164Q04900 197 aa7.41□□□□□ -1.22
CLK3-224ENST00000568605 Q8N377 158 aa7.41□□□□□ -1.22
CLK3-224ENST00000568605 TPRXLQ17RH7 258 aa7.4□□□□□ -1.22
CLK3-224ENST00000568605 OCIAD2Q56VL3 154 aa7.4□□□□□ -1.22
CLK3-224ENST00000568605 SMIM29Q86T20 159 aa7.4□□□□□ -1.22
CLK3-224ENST00000568605 GHRHP01286 108 aa7.39□□□□□ -1.23
CLK3-224ENST00000568605 A0A1B0GX51 115 aa7.38□□□□□ -1.23
CLK3-224ENST00000568605 COX6CP09669 75 aa7.37□□□□□ -1.23
CLK3-224ENST00000568605 HRCT1Q6UXD1 115 aa7.37□□□□□ -1.23
CLK3-224ENST00000568605 CDIP1Q9H305 208 aa7.37□□□□□ -1.23
CLK3-224ENST00000568605 PSMB2P49721 201 aa7.36□□□□□ -1.23
CLK3-224ENST00000568605 Q6JHZ5 121 aa7.36□□□□□ -1.23
CLK3-224ENST00000568605 K7ERJ3 54 aa7.35□□□□□ -1.23
CLK3-224ENST00000568605 TRIAP1O43715 76 aa7.35□□□□□ -1.23
CLK3-224ENST00000568605 DNAL4O96015 105 aa7.35□□□□□ -1.23
CLK3-224ENST00000568605 SNHG12Q9BXW3 62 aa7.35□□□□□ -1.23
CLK3-224ENST00000568605 M0R143 59 aa7.34□□□□□ -1.23
CLK3-224ENST00000568605 CLEC2BQ92478 149 aa7.34□□□□□ -1.23
CLK3-224ENST00000568605 TSTD3H0UI37 97 aa7.33□□□□□ -1.24
CLK3-224ENST00000568605 FAM218AQ96MZ4 157 aa7.33□□□□□ -1.24
CLK3-224ENST00000568605 IGLV8-61A0A075B6I0 122 aa7.32□□□□□ -1.24
CLK3-224ENST00000568605 Q5XG85 94 aa7.31□□□□□ -1.24
CLK3-224ENST00000568605 H3BQ85 93 aa7.3□□□□□ -1.24
CLK3-224ENST00000568605 TCL1BO95988 128 aa7.3□□□□□ -1.24
CLK3-224ENST00000568605 KRTAP13-3Q3SY46 172 aa7.29□□□□□ -1.24
CLK3-224ENST00000568605 IGFL1Q6UW32 110 aa7.28□□□□□ -1.24
CLK3-224ENST00000568605 ORMDL1Q9P0S3 153 aa7.28□□□□□ -1.24
CLK3-224ENST00000568605 A0A0G2JQZ4 141 aa7.27□□□□□ -1.25
CLK3-224ENST00000568605 FABP2P12104 132 aa7.27□□□□□ -1.25
CLK3-224ENST00000568605 NDUFV3P56181 108 aaKnown RBP7.27□□□□□ -1.25
CLK3-224ENST00000568605 H3BUT2 72 aa7.26□□□□□ -1.25
CLK3-224ENST00000568605 SCGB1C2P0DMR2 95 aa7.26□□□□□ -1.25
CLK3-224ENST00000568605 TRBV7-7A0A0K0K1E9 115 aa7.25□□□□□ -1.25
CLK3-224ENST00000568605 LOC105371267A0A1B0GV96 52 aa7.25□□□□□ -1.25
CLK3-224ENST00000568605 H3BMG7 143 aa7.24□□□□□ -1.25
CLK3-224ENST00000568605 TRACP01848 142 aa7.24□□□□□ -1.25
CLK3-224ENST00000568605 TMEM256-PLSCR3K7ERE1 68 aa7.23□□□□□ -1.25
CLK3-224ENST00000568605 SS18L2Q9UHA2 77 aa7.23□□□□□ -1.25
CLK3-224ENST00000568605 LST1O00453 97 aa7.22□□□□□ -1.25
CLK3-224ENST00000568605 ASB16-AS1Q495Z4 193 aa7.22□□□□□ -1.25
CLK3-224ENST00000568605 LYRM7Q5U5X0 104 aa7.22□□□□□ -1.25
CLK3-224ENST00000568605 C1orf195Q5TG92 126 aa7.21□□□□□ -1.26
CLK3-224ENST00000568605 Q6Q795 121 aa7.21□□□□□ -1.26
CLK3-224ENST00000568605 TEN1Q86WV5 123 aa7.21□□□□□ -1.26
CLK3-224ENST00000568605 RNF213Q63HN8 5207 aa7.19□□□□□ -1.26
CLK3-224ENST00000568605 A0A0U1RQV1 116 aa7.19□□□□□ -1.26
CLK3-224ENST00000568605 MUC17Q685J3 4493 aa7.18□□□□□ -1.26
CLK3-224ENST00000568605 SEC61BP60468 96 aaKnown RBP7.18□□□□□ -1.26
CLK3-224ENST00000568605 UBE2V1Q13404 147 aa7.18□□□□□ -1.26
CLK3-224ENST00000568605 BATFQ16520 125 aa7.18□□□□□ -1.26
CLK3-224ENST00000568605 ATXN8Q156A1 80 aa7.17□□□□□ -1.26
CLK3-224ENST00000568605 XP32Q5T750 250 aa7.17□□□□□ -1.26
CLK3-224ENST00000568605 C9orf92A6NGG3 77 aa7.16□□□□□ -1.26
CLK3-224ENST00000568605 ANKRD29Q8N6D5 301 aa7.16□□□□□ -1.26
CLK3-224ENST00000568605 A0A1B0GV72 72 aa7.15□□□□□ -1.26
CLK3-224ENST00000568605 A0A087WSZ3 146 aa7.14□□□□□ -1.27
CLK3-224ENST00000568605 NAA38Q9BRA0 125 aaKnown RBP7.14□□□□□ -1.27
CLK3-224ENST00000568605 TRBV20-1A0A075B6N2 111 aa7.12□□□□□ -1.27
CLK3-224ENST00000568605 TRBV7-4A0A0J9YYF1 115 aa7.12□□□□□ -1.27
CLK3-224ENST00000568605 LCE2BO14633 110 aa7.11□□□□□ -1.27
CLK3-224ENST00000568605 CCKP06307 115 aa7.11□□□□□ -1.27
CLK3-224ENST00000568605 BAALC-AS2P0C853 105 aa7.11□□□□□ -1.27
CLK3-224ENST00000568605 RBM3P98179 157 aaKnown RBP7.11□□□□□ -1.27
CLK3-224ENST00000568605 DSCR8Q96T75 97 aa7.11□□□□□ -1.27
CLK3-224ENST00000568605 A0A1W2PNM2 257 aa7.1□□□□□ -1.27
CLK3-224ENST00000568605 C21orf62-AS1Q17RA5 79 aa7.08□□□□□ -1.28
CLK3-224ENST00000568605 C9orf118A6NHY6 69 aa7.07□□□□□ -1.28
CLK3-224ENST00000568605 JMJD7-PLA2G4BH0Y9G9 81 aa7.07□□□□□ -1.28
CLK3-224ENST00000568605 VPS25Q9BRG1 176 aa7.07□□□□□ -1.28
CLK3-224ENST00000568605 C9JAW5 83 aa7.06□□□□□ -1.28
CLK3-224ENST00000568605 SIGMAR1Q99720 223 aa7.06□□□□□ -1.28
CLK3-224ENST00000568605 MUC2Q02817 5179 aa7.04□□□□□ -1.28
CLK3-224ENST00000568605 TAX1BP3O14907 124 aa7.04□□□□□ -1.28
CLK3-224ENST00000568605 RPL37P61927 97 aaKnown RBP7.04□□□□□ -1.28
CLK3-224ENST00000568605 A0A1W2PPM0 123 aa7.03□□□□□ -1.28
CLK3-224ENST00000568605 PDE6GP18545 87 aa7.03□□□□□ -1.28
CLK3-224ENST00000568605 Q96NJ1 140 aa7.03□□□□□ -1.28
CLK3-224ENST00000568605 OBSCN-AS1Q96MR7 158 aa7.02□□□□□ -1.29
CLK3-224ENST00000568605 H3BT86 120 aa7.01□□□□□ -1.29
CLK3-224ENST00000568605 PCOTHQ58A44 107 aa7.01□□□□□ -1.29
CLK3-224ENST00000568605 A0A1B0GW54 56 aa7□□□□□ -1.29
CLK3-224ENST00000568605 IGKV4-1P06312 121 aa7□□□□□ -1.29
CLK3-224ENST00000568605 LOC110117498A0A087WWA1 95 aa6.99□□□□□ -1.29
CLK3-224ENST00000568605 COL5A1-AS1Q5SY13 56 aa6.99□□□□□ -1.29
CLK3-224ENST00000568605 Q6ZQT0 140 aa6.98□□□□□ -1.29
CLK3-224ENST00000568605 Q75L30 129 aa6.97□□□□□ -1.29
CLK3-224ENST00000568605 LINC00472Q9H8W2 130 aa6.97□□□□□ -1.29
CLK3-224ENST00000568605 C14orf132Q9NPU4 83 aa6.97□□□□□ -1.29
CLK3-224ENST00000568605 SPCS1Q9Y6A9 102 aa6.97□□□□□ -1.29
CLK3-224ENST00000568605 J3KT08 172 aa6.95□□□□□ -1.3
CLK3-224ENST00000568605 ATP11AUNQ6ZP68 121 aa6.95□□□□□ -1.3
CLK3-224ENST00000568605 KRTAP4-1Q9BYQ7 146 aa6.94□□□□□ -1.3
CLK3-224ENST00000568605 DSCR10P59022 87 aa6.93□□□□□ -1.3
CLK3-224ENST00000568605 LINC00313P59037 77 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms