RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 C4orf48Q5BLP8 95 aa11.18□□□□□ -0.62
CLN3-225ENST00000566824 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.18□□□□□ -0.62
CLN3-225ENST00000566824 PRR4Q16378 134 aa11.17□□□□□ -0.62
CLN3-225ENST00000566824 PSMB2P49721 201 aa11.15□□□□□ -0.62
CLN3-225ENST00000566824 UBR4Q5T4S7 5183 aa11.14□□□□□ -0.63
CLN3-225ENST00000566824 M0R143 59 aa11.13□□□□□ -0.63
CLN3-225ENST00000566824 SPINK1P00995 79 aa11.13□□□□□ -0.63
CLN3-225ENST00000566824 HRCT1Q6UXD1 115 aa11.13□□□□□ -0.63
CLN3-225ENST00000566824 NAA38Q9BRA0 125 aaKnown RBP11.1□□□□□ -0.63
CLN3-225ENST00000566824 A0A1B0GX51 115 aa11.09□□□□□ -0.63
CLN3-225ENST00000566824 BATFQ16520 125 aa11.07□□□□□ -0.64
CLN3-225ENST00000566824 COX6CP09669 75 aa11.06□□□□□ -0.64
CLN3-225ENST00000566824 RPS29P62273 56 aaKnown RBP11.06□□□□□ -0.64
CLN3-225ENST00000566824 PPDPFLQ8WWR9 84 aa11.06□□□□□ -0.64
CLN3-225ENST00000566824 SNHG12Q9BXW3 62 aa11.06□□□□□ -0.64
CLN3-225ENST00000566824 IGLV8-61A0A075B6I0 122 aa11.05□□□□□ -0.64
CLN3-225ENST00000566824 F8WEM9 126 aa11.05□□□□□ -0.64
CLN3-225ENST00000566824 SNCGO76070 127 aa11.05□□□□□ -0.64
CLN3-225ENST00000566824 OCIAD2Q56VL3 154 aa11.05□□□□□ -0.64
CLN3-225ENST00000566824 H3BUT2 72 aa11.04□□□□□ -0.64
CLN3-225ENST00000566824 SCGB1C2P0DMR2 95 aa11.03□□□□□ -0.64
CLN3-225ENST00000566824 IGFL1Q6UW32 110 aa11.02□□□□□ -0.65
CLN3-225ENST00000566824 IGLV7-46A0A075B6I9 117 aa11.01□□□□□ -0.65
CLN3-225ENST00000566824 FABP2P12104 132 aa11.01□□□□□ -0.65
CLN3-225ENST00000566824 NDUFV3P56181 108 aaKnown RBP11.01□□□□□ -0.65
CLN3-225ENST00000566824 CD164Q04900 197 aa11.01□□□□□ -0.65
CLN3-225ENST00000566824 LST1O00453 97 aa11□□□□□ -0.65
CLN3-225ENST00000566824 DNAL4O96015 105 aa10.98□□□□□ -0.65
CLN3-225ENST00000566824 Q6JHZ5 121 aa10.97□□□□□ -0.65
CLN3-225ENST00000566824 ORMDL1Q9P0S3 153 aa10.97□□□□□ -0.65
CLN3-225ENST00000566824 TRACP01848 142 aa10.96□□□□□ -0.65
CLN3-225ENST00000566824 TCL1BO95988 128 aa10.95□□□□□ -0.66
CLN3-225ENST00000566824 FP248Q71RG6 208 aaPredicted RBP10.95□□□□□ -0.66
CLN3-225ENST00000566824 LIMD2Q9BT23 127 aa10.94□□□□□ -0.66
CLN3-225ENST00000566824 A0A1B0GV72 72 aa10.93□□□□□ -0.66
CLN3-225ENST00000566824 H3BMG7 143 aa10.93□□□□□ -0.66
CLN3-225ENST00000566824 TAX1BP3O14907 124 aa10.93□□□□□ -0.66
CLN3-225ENST00000566824 RNF213Q63HN8 5207 aa10.92□□□□□ -0.66
CLN3-225ENST00000566824 Q5XG85 94 aa10.91□□□□□ -0.66
CLN3-225ENST00000566824 TPRXLQ17RH7 258 aa10.9□□□□□ -0.66
CLN3-225ENST00000566824 TRBV7-7A0A0K0K1E9 115 aa10.89□□□□□ -0.67
CLN3-225ENST00000566824 GHRHP01286 108 aa10.89□□□□□ -0.67
CLN3-225ENST00000566824 KRTAP13-3Q3SY46 172 aa10.89□□□□□ -0.67
CLN3-225ENST00000566824 C9orf118A6NHY6 69 aa10.88□□□□□ -0.67
CLN3-225ENST00000566824 TMEM256-PLSCR3K7ERE1 68 aa10.88□□□□□ -0.67
CLN3-225ENST00000566824 C1orf195Q5TG92 126 aa10.88□□□□□ -0.67
CLN3-225ENST00000566824 ATXN8Q156A1 80 aa10.87□□□□□ -0.67
CLN3-225ENST00000566824 BAALC-AS2P0C853 105 aa10.86□□□□□ -0.67
CLN3-225ENST00000566824 H3BQ85 93 aa10.85□□□□□ -0.67
CLN3-225ENST00000566824 UBE2V1Q13404 147 aa10.85□□□□□ -0.67
CLN3-225ENST00000566824 A0A1W2PNM2 257 aa10.84□□□□□ -0.67
CLN3-225ENST00000566824 PCP4L1A6NKN8 68 aa10.84□□□□□ -0.67
CLN3-225ENST00000566824 A0A1W2PPM0 123 aa10.83□□□□□ -0.68
CLN3-225ENST00000566824 Q6Q795 121 aa10.83□□□□□ -0.68
CLN3-225ENST00000566824 CDIP1Q9H305 208 aa10.83□□□□□ -0.68
CLN3-225ENST00000566824 ANKRD29Q8N6D5 301 aa10.82□□□□□ -0.68
CLN3-225ENST00000566824 TEN1Q86WV5 123 aa10.81□□□□□ -0.68
CLN3-225ENST00000566824 ASB16-AS1Q495Z4 193 aa10.79□□□□□ -0.68
CLN3-225ENST00000566824 LYRM7Q5U5X0 104 aa10.79□□□□□ -0.68
CLN3-225ENST00000566824 MUC17Q685J3 4493 aa10.78□□□□□ -0.68
CLN3-225ENST00000566824 TRBV20-1A0A075B6N2 111 aa10.78□□□□□ -0.68
CLN3-225ENST00000566824 A0A087WSZ3 146 aa10.77□□□□□ -0.69
CLN3-225ENST00000566824 C9JAW5 83 aa10.77□□□□□ -0.69
CLN3-225ENST00000566824 TRBV7-4A0A0J9YYF1 115 aa10.76□□□□□ -0.69
CLN3-225ENST00000566824 COL5A1-AS1Q5SY13 56 aa10.76□□□□□ -0.69
CLN3-225ENST00000566824 C9orf92A6NGG3 77 aa10.75□□□□□ -0.69
CLN3-225ENST00000566824 RBM3P98179 157 aaKnown RBP10.74□□□□□ -0.69
CLN3-225ENST00000566824 MTURNQ8N3F0 131 aa10.74□□□□□ -0.69
CLN3-225ENST00000566824 CCKP06307 115 aa10.72□□□□□ -0.69
CLN3-225ENST00000566824 XP32Q5T750 250 aa10.72□□□□□ -0.69
CLN3-225ENST00000566824 Q96NJ1 140 aa10.7□□□□□ -0.7
CLN3-225ENST00000566824 SPCS1Q9Y6A9 102 aa10.69□□□□□ -0.7
CLN3-225ENST00000566824 DSCR8Q96T75 97 aa10.68□□□□□ -0.7
CLN3-225ENST00000566824 VPS25Q9BRG1 176 aa10.68□□□□□ -0.7
CLN3-225ENST00000566824 SS18L2Q9UHA2 77 aa10.68□□□□□ -0.7
CLN3-225ENST00000566824 MUC2Q02817 5179 aa10.66□□□□□ -0.7
CLN3-225ENST00000566824 OBSCN-AS1Q96MR7 158 aa10.65□□□□□ -0.7
CLN3-225ENST00000566824 JMJD7-PLA2G4BH0Y9G9 81 aa10.63□□□□□ -0.71
CLN3-225ENST00000566824 Q6ZQT0 140 aa10.63□□□□□ -0.71
CLN3-225ENST00000566824 C14orf132Q9NPU4 83 aa10.63□□□□□ -0.71
CLN3-225ENST00000566824 H3BT86 120 aa10.62□□□□□ -0.71
CLN3-225ENST00000566824 LOC110117498A0A087WWA1 95 aa10.61□□□□□ -0.71
CLN3-225ENST00000566824 SMCPP49901 116 aaPredicted RBP10.61□□□□□ -0.71
CLN3-225ENST00000566824 DEFB116Q30KQ4 102 aa10.59□□□□□ -0.71
CLN3-225ENST00000566824 K7EP34 96 aa10.58□□□□□ -0.71
CLN3-225ENST00000566824 LINC00472Q9H8W2 130 aa10.58□□□□□ -0.71
CLN3-225ENST00000566824 KRTAP4-1Q9BYQ7 146 aa10.57□□□□□ -0.72
CLN3-225ENST00000566824 PRO0461Q9UI25 63 aa10.57□□□□□ -0.72
CLN3-225ENST00000566824 IGKV4-1P06312 121 aa10.54□□□□□ -0.72
CLN3-225ENST00000566824 SIGMAR1Q99720 223 aa10.54□□□□□ -0.72
CLN3-225ENST00000566824 SEC61BP60468 96 aaKnown RBP10.53□□□□□ -0.72
CLN3-225ENST00000566824 PDE6GP18545 87 aa10.52□□□□□ -0.73
CLN3-225ENST00000566824 PCOTHQ58A44 107 aa10.5□□□□□ -0.73
CLN3-225ENST00000566824 DSCR10P59022 87 aa10.49□□□□□ -0.73
CLN3-225ENST00000566824 RPL37P61927 97 aaKnown RBP10.48□□□□□ -0.73
CLN3-225ENST00000566824 NOTCH2NLQ7Z3S9 236 aa10.47□□□□□ -0.73
CLN3-225ENST00000566824 GTF2H5Q6ZYL4 71 aa10.44□□□□□ -0.74
CLN3-225ENST00000566824 A0A1B0GW54 56 aa10.43□□□□□ -0.74
CLN3-225ENST00000566824 C21orf62-AS1Q17RA5 79 aa10.43□□□□□ -0.74
CLN3-225ENST00000566824 IGHV6-1A0A0B4J1U7 121 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 139.6 ms