RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 EPG5Q9HCE0 2579 aa3.75□□□□□ -1.81
CLK3-212ENST00000563418 LINC00304Q8N9R0 145 aa3.75□□□□□ -1.81
CLK3-212ENST00000563418 SMR3AQ99954 134 aa3.75□□□□□ -1.81
CLK3-212ENST00000563418 KRTAP11-1Q8IUC1 163 aa3.73□□□□□ -1.81
CLK3-212ENST00000563418 FLG2Q5D862 2391 aaPredicted RBP3.72□□□□□ -1.81
CLK3-212ENST00000563418 EP400Q96L91 3159 aa3.71□□□□□ -1.82
CLK3-212ENST00000563418 WWC2-AS2Q96NR7 200 aa3.71□□□□□ -1.82
CLK3-212ENST00000563418 UNC79Q9P2D8 2635 aa3.7□□□□□ -1.82
CLK3-212ENST00000563418 DNAH12Q6ZR08 3092 aa3.69□□□□□ -1.82
CLK3-212ENST00000563418 HELZ2Q9BYK8 2649 aaKnown RBP3.68□□□□□ -1.82
CLK3-212ENST00000563418 K7EIL1 84 aa3.67□□□□□ -1.82
CLK3-212ENST00000563418 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.67□□□□□ -1.82
CLK3-212ENST00000563418 S4R3F8 94 aa3.66□□□□□ -1.82
CLK3-212ENST00000563418 CHD6Q8TD26 2715 aa3.66□□□□□ -1.82
CLK3-212ENST00000563418 KRTAP10-9P60411 292 aa3.66□□□□□ -1.82
CLK3-212ENST00000563418 NBEAL1Q6ZS30 2694 aa3.66□□□□□ -1.82
CLK3-212ENST00000563418 A0A087WTM6 91 aa3.66□□□□□ -1.82
CLK3-212ENST00000563418 ITPR1Q14643 2758 aa3.66□□□□□ -1.82
CLK3-212ENST00000563418 FLNAP21333 2647 aaKnown RBP3.64□□□□□ -1.83
CLK3-212ENST00000563418 C9orf92A6NGG3 77 aa3.63□□□□□ -1.83
CLK3-212ENST00000563418 AKAP13Q12802 2813 aa3.63□□□□□ -1.83
CLK3-212ENST00000563418 MAP1AP78559 2803 aaPredicted RBP3.63□□□□□ -1.83
CLK3-212ENST00000563418 PLAC4Q8WY50 150 aa3.62□□□□□ -1.83
CLK3-212ENST00000563418 MAST4O15021 2626 aa3.62□□□□□ -1.83
CLK3-212ENST00000563418 USP24Q9UPU5 2620 aa3.61□□□□□ -1.83
CLK3-212ENST00000563418 M0QZ58 72 aa3.59□□□□□ -1.83
CLK3-212ENST00000563418 DMBT1Q9UGM3 2413 aaPredicted RBP3.59□□□□□ -1.83
CLK3-212ENST00000563418 STAB1Q9NY15 2570 aa3.59□□□□□ -1.84
CLK3-212ENST00000563418 TRANK1O15050 2925 aa3.58□□□□□ -1.84
CLK3-212ENST00000563418 Q6ZSA8 131 aa3.58□□□□□ -1.84
CLK3-212ENST00000563418 KRTAP10-11P60412 298 aa3.58□□□□□ -1.84
CLK3-212ENST00000563418 BAHCC1Q9P281 2608 aa3.57□□□□□ -1.84
CLK3-212ENST00000563418 H0YAA0 97 aa3.57□□□□□ -1.84
CLK3-212ENST00000563418 KRTAP24-1Q3LI83 254 aa3.57□□□□□ -1.84
CLK3-212ENST00000563418 PP632Q6XCG6 107 aa3.57□□□□□ -1.84
CLK3-212ENST00000563418 ATRQ13535 2644 aa3.56□□□□□ -1.84
CLK3-212ENST00000563418 R4GN34 69 aa3.56□□□□□ -1.84
CLK3-212ENST00000563418 RPS29P62273 56 aaKnown RBP3.56□□□□□ -1.84
CLK3-212ENST00000563418 NOTCH1P46531 2555 aa3.56□□□□□ -1.84
CLK3-212ENST00000563418 P0C880 135 aa3.55□□□□□ -1.84
CLK3-212ENST00000563418 KRTAP10-3P60369 221 aa3.54□□□□□ -1.84
CLK3-212ENST00000563418 KRTAP13-1Q8IUC0 172 aa3.53□□□□□ -1.84
CLK3-212ENST00000563418 UTRNP46939 3433 aa3.53□□□□□ -1.84
CLK3-212ENST00000563418 CFAP54Q96N23 3096 aa3.53□□□□□ -1.85
CLK3-212ENST00000563418 CFAP46Q8IYW2 2715 aa3.52□□□□□ -1.85
CLK3-212ENST00000563418 NBEAL2Q6ZNJ1 2754 aa3.52□□□□□ -1.85
CLK3-212ENST00000563418 ITPR3Q14573 2671 aa3.52□□□□□ -1.85
CLK3-212ENST00000563418 NBEAQ8NFP9 2946 aa3.52□□□□□ -1.85
CLK3-212ENST00000563418 APCP25054 2843 aa3.52□□□□□ -1.85
CLK3-212ENST00000563418 MGAM2Q2M2H8 2515 aa3.51□□□□□ -1.85
CLK3-212ENST00000563418 DSPP15924 2871 aaKnown RBP3.5□□□□□ -1.85
CLK3-212ENST00000563418 KRTAP7-1Q8IUC3 87 aa3.5□□□□□ -1.85
CLK3-212ENST00000563418 ZFHX3Q15911 3703 aa3.5□□□□□ -1.85
CLK3-212ENST00000563418 COL6A5A8TX70 2615 aa3.5□□□□□ -1.85
CLK3-212ENST00000563418 FLNBO75369 2602 aaKnown RBP3.5□□□□□ -1.85
CLK3-212ENST00000563418 PCNTO95613 3336 aa3.5□□□□□ -1.85
CLK3-212ENST00000563418 UTP20O75691 2785 aaKnown RBP3.48□□□□□ -1.85
CLK3-212ENST00000563418 CEP350Q5VT06 3117 aa3.48□□□□□ -1.85
CLK3-212ENST00000563418 CHD7Q9P2D1 2997 aa3.48□□□□□ -1.85
CLK3-212ENST00000563418 KMT2BQ9UMN6 2715 aaPredicted RBP3.47□□□□□ -1.85
CLK3-212ENST00000563418 LRBAP50851 2863 aa3.47□□□□□ -1.85
CLK3-212ENST00000563418 CHD9Q3L8U1 2897 aa3.47□□□□□ -1.85
CLK3-212ENST00000563418 C5orf42Q9H799 3197 aa3.46□□□□□ -1.86
CLK3-212ENST00000563418 GOLGB1Q14789 3259 aaKnown RBP3.46□□□□□ -1.86
CLK3-212ENST00000563418 KRTAP1-3Q8IUG1 177 aa3.45□□□□□ -1.86
CLK3-212ENST00000563418 FRYQ5TBA9 3013 aa3.45□□□□□ -1.86
CLK3-212ENST00000563418 HECTD1Q9ULT8 2610 aa3.45□□□□□ -1.86
CLK3-212ENST00000563418 SETXQ7Z333 2677 aaKnown RBP3.45□□□□□ -1.86
CLK3-212ENST00000563418 TEX15Q9BXT5 2789 aa3.44□□□□□ -1.86
CLK3-212ENST00000563418 KRTAP13-3Q3SY46 172 aa3.44□□□□□ -1.86
CLK3-212ENST00000563418 KRTAP1-5Q9BYS1 174 aa3.44□□□□□ -1.86
CLK3-212ENST00000563418 KRTAP1-1Q07627 177 aa3.43□□□□□ -1.86
CLK3-212ENST00000563418 C10orf95Q9H7T3 257 aa3.43□□□□□ -1.86
CLK3-212ENST00000563418 LAMA2P24043 3122 aaKnown RBP3.43□□□□□ -1.86
CLK3-212ENST00000563418 UBR5O95071 2799 aaPredicted RBP3.43□□□□□ -1.86
CLK3-212ENST00000563418 STAB2Q8WWQ8 2551 aa3.42□□□□□ -1.86
CLK3-212ENST00000563418 MGAQ8IWI9 3026 aa3.42□□□□□ -1.86
CLK3-212ENST00000563418 TEP1Q99973 2627 aaKnown RBP3.41□□□□□ -1.86
CLK3-212ENST00000563418 KALRNO60229 2985 aa3.4□□□□□ -1.86
CLK3-212ENST00000563418 KRTAP21-3Q3LHN1 58 aa3.4□□□□□ -1.87
CLK3-212ENST00000563418 ZNF292O60281 2723 aa3.39□□□□□ -1.87
CLK3-212ENST00000563418 TACC2O95359 2948 aa3.39□□□□□ -1.87
CLK3-212ENST00000563418 USP34Q70CQ2 3546 aa3.39□□□□□ -1.87
CLK3-212ENST00000563418 KRTAP15-1Q3LI76 137 aa3.38□□□□□ -1.87
CLK3-212ENST00000563418 TNP1P09430 55 aa3.36□□□□□ -1.87
CLK3-212ENST00000563418 Q6ZRN7 208 aaPredicted RBP3.36□□□□□ -1.87
CLK3-212ENST00000563418 TRIOO75962 3097 aa3.35□□□□□ -1.87
CLK3-212ENST00000563418 NSD1Q96L73 2696 aaPredicted RBP3.35□□□□□ -1.87
CLK3-212ENST00000563418 M0R2T5 61 aa3.35□□□□□ -1.87
CLK3-212ENST00000563418 ZZEF1O43149 2961 aa3.34□□□□□ -1.87
CLK3-212ENST00000563418 TNRC18O15417 2968 aaPredicted RBP3.33□□□□□ -1.88
CLK3-212ENST00000563418 SMR3BP02814 79 aaPredicted RBP3.33□□□□□ -1.88
CLK3-212ENST00000563418 KRTAP13-2Q52LG2 175 aa3.33□□□□□ -1.88
CLK3-212ENST00000563418 TPRXLQ17RH7 258 aa3.32□□□□□ -1.88
CLK3-212ENST00000563418 TGP01266 2768 aa3.32□□□□□ -1.88
CLK3-212ENST00000563418 VPS13AQ96RL7 3174 aa3.32□□□□□ -1.88
CLK3-212ENST00000563418 INE1O15225 51 aa3.31□□□□□ -1.88
CLK3-212ENST00000563418 NIPBLQ6KC79 2804 aaeCLIP3.3□□□□□ -1.88
CLK3-212ENST00000563418 BRCA2P51587 3418 aa3.29□□□□□ -1.88
CLK3-212ENST00000563418 ITPR2Q14571 2701 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms