RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-222	ENST00000560131	MOBP	Q13875	183 aa		3.22	□□□□□ -1.89
TPM1-222	ENST00000560131	DEFB113	Q30KQ7	82 aa		3.22	□□□□□ -1.89
TPM1-222	ENST00000560131	LINC01556	Q5JQF7	62 aa		3.22	□□□□□ -1.89
TPM1-222	ENST00000560131	IGFL1	Q6UW32	110 aa		3.22	□□□□□ -1.89
TPM1-222	ENST00000560131	RIF1	Q5UIP0	2472 aa	Known RBP	3.22	□□□□□ -1.89
TPM1-222	ENST00000560131	DEFB131B	A0A096LNP1	70 aa		3.21	□□□□□ -1.9
TPM1-222	ENST00000560131	PRB1	P04280	392 aa		3.21	□□□□□ -1.9
TPM1-222	ENST00000560131		Q6ZR54	194 aa		3.21	□□□□□ -1.9
TPM1-222	ENST00000560131	WFDC13	Q8IUB5	93 aa		3.21	□□□□□ -1.9
TPM1-222	ENST00000560131	SPTSSB	Q8NFR3	76 aa		3.21	□□□□□ -1.9
TPM1-222	ENST00000560131	LINC00472	Q9H8W2	130 aa		3.21	□□□□□ -1.9
TPM1-222	ENST00000560131	DOPEY1	Q5JWR5	2465 aa		3.2	□□□□□ -1.9
TPM1-222	ENST00000560131		H0Y9J4	135 aa		3.2	□□□□□ -1.9
TPM1-222	ENST00000560131	BOD1L1	Q8NFC6	3051 aa		3.2	□□□□□ -1.9
TPM1-222	ENST00000560131	TLN2	Q9Y4G6	2542 aa		3.2	□□□□□ -1.9
TPM1-222	ENST00000560131		A0A087WSZ3	146 aa		3.19	□□□□□ -1.9
TPM1-222	ENST00000560131	MMP24-AS1	A0A0U1RRL7	71 aa		3.19	□□□□□ -1.9
TPM1-222	ENST00000560131	C8orf87	E5RJ46	101 aa		3.19	□□□□□ -1.9
TPM1-222	ENST00000560131	DEFB135	Q30KP9	77 aa		3.19	□□□□□ -1.9
TPM1-222	ENST00000560131	TTC28	Q96AY4	2481 aa		3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	ASPM	Q8IZT6	3477 aa		3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	DNAH10OS	P0CZ25	163 aa		3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	CAMK2N1	Q7Z7J9	78 aa		3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	WFDC10B	Q8IUB3	73 aa		3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	MAP1A	P78559	2803 aa	Predicted RBP	3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	MYO9A	B2RTY4	2548 aa		3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	SPG11	Q96JI7	2443 aa		3.18	□□□□□ -1.9
TPM1-222	ENST00000560131	RPL37A	P61513	92 aa	Known RBP	3.17	□□□□□ -1.9
TPM1-222	ENST00000560131	NCOR2	Q9Y618	2525 aa		3.17	□□□□□ -1.9
TPM1-222	ENST00000560131	SETX	Q7Z333	2677 aa	Known RBP	3.16	□□□□□ -1.9
TPM1-222	ENST00000560131	OBSCN	Q5VST9	7968 aa		3.16	□□□□□ -1.9
TPM1-222	ENST00000560131	ATM	Q13315	3056 aa		3.15	□□□□□ -1.9
TPM1-222	ENST00000560131	JMJD1C	Q15652	2540 aa		3.15	□□□□□ -1.91
TPM1-222	ENST00000560131	IGKV2-24	A0A0C4DH68	120 aa		3.15	□□□□□ -1.91
TPM1-222	ENST00000560131	HRES1	P13985	223 aa		3.15	□□□□□ -1.91
TPM1-222	ENST00000560131	MUC6	Q6W4X9	2439 aa		3.15	□□□□□ -1.91
TPM1-222	ENST00000560131	ANKRD17	O75179	2603 aa	Known RBP	3.15	□□□□□ -1.91
TPM1-222	ENST00000560131	CELSR1	Q9NYQ6	3014 aa		3.14	□□□□□ -1.91
TPM1-222	ENST00000560131	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	3.14	□□□□□ -1.91
TPM1-222	ENST00000560131	DEFB4A	O15263	64 aa		3.14	□□□□□ -1.91
TPM1-222	ENST00000560131	HTN3	P15516	51 aa		3.14	□□□□□ -1.91
TPM1-222	ENST00000560131	SPINK7	P58062	85 aa		3.14	□□□□□ -1.91
TPM1-222	ENST00000560131	LINC01554	Q52M75	96 aa		3.14	□□□□□ -1.91
TPM1-222	ENST00000560131	IGF2R	P11717	2491 aa		3.14	□□□□□ -1.91
TPM1-222	ENST00000560131	USP9Y	O00507	2555 aa	Predicted RBP	3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	PTPN13	Q12923	2485 aa		3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	SVEP1	Q4LDE5	3571 aa		3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	LINC00313	P59037	77 aa		3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	DEFB116	Q30KQ4	102 aa		3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	SPAG11A	Q6PDA7	123 aa		3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	SPATA8	Q6RVD6	105 aa		3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	USP9X	Q93008	2570 aa	Predicted RBP	3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	CHD6	Q8TD26	2715 aa		3.13	□□□□□ -1.91
TPM1-222	ENST00000560131	FN1	P02751	2386 aa	Known RBP	3.12	□□□□□ -1.91
TPM1-222	ENST00000560131	KRTAP9-6	A8MVA2	160 aa		3.12	□□□□□ -1.91
TPM1-222	ENST00000560131	RTL8C	O15255	209 aa		3.12	□□□□□ -1.91
TPM1-222	ENST00000560131	KRTAP10-3	P60369	221 aa		3.12	□□□□□ -1.91
TPM1-222	ENST00000560131		Q96NJ1	140 aa		3.12	□□□□□ -1.91
TPM1-222	ENST00000560131	C8orf17	Q9NRJ1	99 aa		3.12	□□□□□ -1.91
TPM1-222	ENST00000560131	AKAP9	Q99996	3911 aa		3.12	□□□□□ -1.91
TPM1-222	ENST00000560131	DMXL1	Q9Y485	3027 aa		3.11	□□□□□ -1.91
TPM1-222	ENST00000560131	PRB2	P02812	416 aa	Predicted RBP	3.11	□□□□□ -1.91
TPM1-222	ENST00000560131	KRTAP10-5	P60370	271 aa		3.11	□□□□□ -1.91
TPM1-222	ENST00000560131	ITPR1	Q14643	2758 aa		3.1	□□□□□ -1.91
TPM1-222	ENST00000560131	ACYP2	P14621	99 aa		3.1	□□□□□ -1.91
TPM1-222	ENST00000560131	KRTAP13-3	Q3SY46	172 aa		3.1	□□□□□ -1.91
TPM1-222	ENST00000560131	MRPL34	Q9BQ48	92 aa	Known RBP	3.1	□□□□□ -1.91
TPM1-222	ENST00000560131	LAMA5	O15230	3695 aa		3.09	□□□□□ -1.91
TPM1-222	ENST00000560131	RELN	P78509	3460 aa		3.09	□□□□□ -1.91
TPM1-222	ENST00000560131	ZFYVE26	Q68DK2	2539 aa		3.09	□□□□□ -1.91
TPM1-222	ENST00000560131		A0A1B0GVX0	72 aa		3.09	□□□□□ -1.91
TPM1-222	ENST00000560131	PCOTH	Q58A44	107 aa		3.09	□□□□□ -1.91
TPM1-222	ENST00000560131	DMAC1	Q96GE9	116 aa		3.09	□□□□□ -1.91
TPM1-222	ENST00000560131	MXRA5	Q9NR99	2828 aa		3.09	□□□□□ -1.92
TPM1-222	ENST00000560131	MUC3A	Q02505	3323 aa		3.09	□□□□□ -1.92
TPM1-222	ENST00000560131	ASH1L	Q9NR48	2969 aa	Known RBP	3.09	□□□□□ -1.92
TPM1-222	ENST00000560131	HIVEP2	P31629	2446 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131		A0A0G2JQZ4	141 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131		A0A1W2PNN7	141 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131	PRLH	P81277	87 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131	LINC00483	Q53H64	154 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131	KRTAP13-1	Q8IUC0	172 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131	RETNLB	Q9BQ08	111 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131	LRRK2	Q5S007	2527 aa		3.08	□□□□□ -1.92
TPM1-222	ENST00000560131	NAV2	Q8IVL1	2488 aa		3.07	□□□□□ -1.92
TPM1-222	ENST00000560131	EPG5	Q9HCE0	2579 aa		3.06	□□□□□ -1.92
TPM1-222	ENST00000560131	VPS13C	Q709C8	3753 aa		3.06	□□□□□ -1.92
TPM1-222	ENST00000560131		A0A096LNI7	61 aa		3.06	□□□□□ -1.92
TPM1-222	ENST00000560131	UQCR11	O14957	56 aa		3.06	□□□□□ -1.92
TPM1-222	ENST00000560131	APC	P25054	2843 aa		3.06	□□□□□ -1.92
TPM1-222	ENST00000560131	ANK3	Q12955	4377 aa	Known RBP	3.06	□□□□□ -1.92
TPM1-222	ENST00000560131	CELSR2	Q9HCU4	2923 aa		3.06	□□□□□ -1.92
TPM1-222	ENST00000560131	NBPF19	A0A087WUL8	3843 aa		3.06	□□□□□ -1.92
TPM1-222	ENST00000560131	ALMS1	Q8TCU4	4167 aa		3.05	□□□□□ -1.92
TPM1-222	ENST00000560131	IGHV6-1	A0A0B4J1U7	121 aa		3.05	□□□□□ -1.92
TPM1-222	ENST00000560131		A0A1B0GU69	56 aa		3.04	□□□□□ -1.92
TPM1-222	ENST00000560131	MIR22HG	Q0VDD5	57 aa		3.04	□□□□□ -1.92
TPM1-222	ENST00000560131	KRTAP4-3	Q9BYR4	195 aa		3.04	□□□□□ -1.92
TPM1-222	ENST00000560131	ZNF706	Q9Y5V0	76 aa	Predicted RBP	3.04	□□□□□ -1.92
TPM1-222	ENST00000560131	UTP20	O75691	2785 aa	Known RBP	3.04	□□□□□ -1.92

Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms