RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 NMUP48645 174 aa5.74□□□□□ -1.49
SPG11-214ENST00000558989 MIEN1Q9BRT3 115 aa5.74□□□□□ -1.49
SPG11-214ENST00000558989 HIGD2AQ9BW72 106 aa5.74□□□□□ -1.49
SPG11-214ENST00000558989 IGKV2D-26A0A0A0MRZ7 120 aa5.74□□□□□ -1.49
SPG11-214ENST00000558989 TRBV10-3A0A0K0K1G6 114 aa5.74□□□□□ -1.49
SPG11-214ENST00000558989 HIST1H2BLQ99880 126 aa5.74□□□□□ -1.49
SPG11-214ENST00000558989 UBR4Q5T4S7 5183 aa5.73□□□□□ -1.49
SPG11-214ENST00000558989 A0A087X002 238 aa5.73□□□□□ -1.49
SPG11-214ENST00000558989 KRTAP13-1Q8IUC0 172 aa5.73□□□□□ -1.49
SPG11-214ENST00000558989 ZNF815PA8K554 130 aa5.72□□□□□ -1.49
SPG11-214ENST00000558989 KRTAP16-1A8MUX0 517 aa5.72□□□□□ -1.49
SPG11-214ENST00000558989 SOSTDC1Q6X4U4 206 aa5.71□□□□□ -1.49
SPG11-214ENST00000558989 SLC25A34Q6PIV7 304 aa5.71□□□□□ -1.5
SPG11-214ENST00000558989 TRBV7-6A0A0J9YX20 115 aa5.7□□□□□ -1.5
SPG11-214ENST00000558989 ETDCA0A1B0GVM5 59 aa5.7□□□□□ -1.5
SPG11-214ENST00000558989 CRYGAP11844 174 aa5.7□□□□□ -1.5
SPG11-214ENST00000558989 S100A7L2Q5SY68 101 aa5.7□□□□□ -1.5
SPG11-214ENST00000558989 TYMSOSQ8TAI1 123 aa5.7□□□□□ -1.5
SPG11-214ENST00000558989 SMIM29Q86T20 159 aa5.69□□□□□ -1.5
SPG11-214ENST00000558989 LCA10Q71F78 164 aa5.69□□□□□ -1.5
SPG11-214ENST00000558989 CAMK2N1Q7Z7J9 78 aa5.69□□□□□ -1.5
SPG11-214ENST00000558989 KRTAP13-2Q52LG2 175 aa5.68□□□□□ -1.5
SPG11-214ENST00000558989 LCE3BQ5TA77 95 aa5.68□□□□□ -1.5
SPG11-214ENST00000558989 LINC00308Q8TCZ7 52 aa5.68□□□□□ -1.5
SPG11-214ENST00000558989 LITAFQ99732 161 aa5.68□□□□□ -1.5
SPG11-214ENST00000558989 SNHG12Q9BXW3 62 aa5.68□□□□□ -1.5
SPG11-214ENST00000558989 KCNQ1DNQ9H478 68 aa5.68□□□□□ -1.5
SPG11-214ENST00000558989 LRP2P98164 4655 aa5.68□□□□□ -1.5
SPG11-214ENST00000558989 LOC107984156A0A0G2JMH3 177 aa5.67□□□□□ -1.5
SPG11-214ENST00000558989 TAX1BP3O14907 124 aa5.67□□□□□ -1.5
SPG11-214ENST00000558989 ARL17AQ8IVW1 177 aa5.67□□□□□ -1.5
SPG11-214ENST00000558989 SMCR5Q8TEV8 140 aa5.67□□□□□ -1.5
SPG11-214ENST00000558989 ZNF73O43830 326 aaPredicted RBP5.67□□□□□ -1.5
SPG11-214ENST00000558989 PCP2Q8IVA1 136 aa5.67□□□□□ -1.5
SPG11-214ENST00000558989 C3orf22Q8N5N4 141 aa5.67□□□□□ -1.5
SPG11-214ENST00000558989 TRBV10-2A0A0K0K1G8 114 aa5.66□□□□□ -1.5
SPG11-214ENST00000558989 A0A1B0GW54 56 aa5.66□□□□□ -1.5
SPG11-214ENST00000558989 LPAP08519 4548 aa5.65□□□□□ -1.5
SPG11-214ENST00000558989 TRAV23DV6A0A075B6W5 121 aa5.65□□□□□ -1.5
SPG11-214ENST00000558989 SPRR1AP35321 89 aa5.65□□□□□ -1.5
SPG11-214ENST00000558989 SPRR4Q96PI1 79 aa5.65□□□□□ -1.5
SPG11-214ENST00000558989 ERC2-IT1O76042 136 aa5.64□□□□□ -1.51
SPG11-214ENST00000558989 COL5A1-AS1Q5SY13 56 aa5.64□□□□□ -1.51
SPG11-214ENST00000558989 IGLV7-46A0A075B6I9 117 aa5.64□□□□□ -1.51
SPG11-214ENST00000558989 TIMM17BO60830 172 aa5.64□□□□□ -1.51
SPG11-214ENST00000558989 IGLV6-57P01721 117 aa5.64□□□□□ -1.51
SPG11-214ENST00000558989 FAM229BQ4G0N7 80 aa5.64□□□□□ -1.51
SPG11-214ENST00000558989 KRTAP4-12Q9BQ66 201 aa5.64□□□□□ -1.51
SPG11-214ENST00000558989 RETNLBQ9BQ08 111 aa5.63□□□□□ -1.51
SPG11-214ENST00000558989 LINC00304Q8N9R0 145 aa5.62□□□□□ -1.51
SPG11-214ENST00000558989 Q9BRP9 147 aa5.62□□□□□ -1.51
SPG11-214ENST00000558989 Q6ZRX8 168 aa5.62□□□□□ -1.51
SPG11-214ENST00000558989 GTF2H5Q6ZYL4 71 aa5.62□□□□□ -1.51
SPG11-214ENST00000558989 KRTAP9-9Q9BYP9 154 aa5.62□□□□□ -1.51
SPG11-214ENST00000558989 KRTAP9-4Q9BYQ2 154 aa5.62□□□□□ -1.51
SPG11-214ENST00000558989 C8orf17Q9NRJ1 99 aa5.62□□□□□ -1.51
SPG11-214ENST00000558989 MUSTN1Q8IVN3 82 aa5.61□□□□□ -1.51
SPG11-214ENST00000558989 SPANXDQ9BXN6 97 aa5.6□□□□□ -1.51
SPG11-214ENST00000558989 HINT1P49773 126 aaPredicted RBP5.6□□□□□ -1.51
SPG11-214ENST00000558989 HSD52Q0P140 79 aa5.6□□□□□ -1.51
SPG11-214ENST00000558989 PYY3Q5JQD4 70 aa5.6□□□□□ -1.51
SPG11-214ENST00000558989 ST20-AS1Q8NBB2 130 aa5.6□□□□□ -1.51
SPG11-214ENST00000558989 NAA38Q9BRA0 125 aaKnown RBP5.6□□□□□ -1.51
SPG11-214ENST00000558989 BRK1Q8WUW1 75 aa5.59□□□□□ -1.51
SPG11-214ENST00000558989 KRTAP4-8A0A0G2JLE6 195 aa5.58□□□□□ -1.52
SPG11-214ENST00000558989 FABP2P12104 132 aa5.58□□□□□ -1.52
SPG11-214ENST00000558989 MOBPQ13875 183 aa5.58□□□□□ -1.52
SPG11-214ENST00000558989 H3BMG7 143 aa5.57□□□□□ -1.52
SPG11-214ENST00000558989 RNF213Q63HN8 5207 aa5.57□□□□□ -1.52
SPG11-214ENST00000558989 FAM236AA0A1B0GUQ0 79 aa5.56□□□□□ -1.52
SPG11-214ENST00000558989 FAM236BA0A1B0GV22 79 aa5.56□□□□□ -1.52
SPG11-214ENST00000558989 IFITM1P13164 125 aa5.56□□□□□ -1.52
SPG11-214ENST00000558989 COX7BP24311 80 aa5.56□□□□□ -1.52
SPG11-214ENST00000558989 C9orf153Q5TBE3 101 aa5.56□□□□□ -1.52
SPG11-214ENST00000558989 COPS9Q8WXC6 57 aa5.56□□□□□ -1.52
SPG11-214ENST00000558989 TMEM256-PLSCR3K7ERE1 68 aa5.55□□□□□ -1.52
SPG11-214ENST00000558989 LINC00483Q53H64 154 aa5.55□□□□□ -1.52
SPG11-214ENST00000558989 VAMP8Q9BV40 100 aa5.55□□□□□ -1.52
SPG11-214ENST00000558989 BPY2O14599 106 aa5.55□□□□□ -1.52
SPG11-214ENST00000558989 DEFB105AQ8NG35 78 aa5.55□□□□□ -1.52
SPG11-214ENST00000558989 LINC01554Q52M75 96 aa5.54□□□□□ -1.52
SPG11-214ENST00000558989 Q8N377 158 aa5.54□□□□□ -1.52
SPG11-214ENST00000558989 CCDC179H3BU77 68 aa5.53□□□□□ -1.52
SPG11-214ENST00000558989 ELOF1P60002 83 aaKnown RBP5.53□□□□□ -1.52
SPG11-214ENST00000558989 SPATA45Q537H7 98 aa5.53□□□□□ -1.52
SPG11-214ENST00000558989 Q1RN00 199 aa5.52□□□□□ -1.53
SPG11-214ENST00000558989 LUZP6Q538Z0 58 aa5.52□□□□□ -1.53
SPG11-214ENST00000558989 SMIM11BQ8TCY0 68 aa5.52□□□□□ -1.53
SPG11-214ENST00000558989 TRAV13-2A0A0B4J235 113 aa5.51□□□□□ -1.53
SPG11-214ENST00000558989 COX8AP10176 69 aa5.51□□□□□ -1.53
SPG11-214ENST00000558989 SPAG11AQ6PDA7 123 aa5.51□□□□□ -1.53
SPG11-214ENST00000558989 A0A1B0GVX0 72 aa5.51□□□□□ -1.53
SPG11-214ENST00000558989 TMEM258P61165 79 aa5.5□□□□□ -1.53
SPG11-214ENST00000558989 SSBP3-AS1Q7Z2R9 100 aa5.49□□□□□ -1.53
SPG11-214ENST00000558989 H7C2G1 150 aa5.48□□□□□ -1.53
SPG11-214ENST00000558989 SPINK1P00995 79 aa5.48□□□□□ -1.53
SPG11-214ENST00000558989 TEN1Q86WV5 123 aa5.48□□□□□ -1.53
SPG11-214ENST00000558989 A0A0G2JQZ4 141 aa5.46□□□□□ -1.53
SPG11-214ENST00000558989 K7ERS5 55 aa5.46□□□□□ -1.53
SPG11-214ENST00000558989 UQCRQO14949 82 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms