RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.75□□□□□ -1.49
CUX1-216ENST00000558469 HERC2O95714 4834 aa5.74□□□□□ -1.49
CUX1-216ENST00000558469 DNAL4O96015 105 aa5.74□□□□□ -1.49
CUX1-216ENST00000558469 KRTAP1-4P0C5Y4 121 aa5.74□□□□□ -1.49
CUX1-216ENST00000558469 ATXN8Q156A1 80 aa5.74□□□□□ -1.49
CUX1-216ENST00000558469 TRBV20-1A0A075B6N2 111 aa5.73□□□□□ -1.49
CUX1-216ENST00000558469 TEX49A0A1B0GTD5 131 aa5.73□□□□□ -1.49
CUX1-216ENST00000558469 TRACP01848 142 aa5.73□□□□□ -1.49
CUX1-216ENST00000558469 LINC01547P58512 204 aaPredicted RBP5.73□□□□□ -1.49
CUX1-216ENST00000558469 KRTAP19-4Q3LI73 84 aa5.73□□□□□ -1.49
CUX1-216ENST00000558469 LINC00483Q53H64 154 aa5.73□□□□□ -1.49
CUX1-216ENST00000558469 FLG2Q5D862 2391 aaPredicted RBP5.73□□□□□ -1.49
CUX1-216ENST00000558469 IGLV5-48A0A075B6I7 105 aa5.72□□□□□ -1.49
CUX1-216ENST00000558469 OCIAD2Q56VL3 154 aa5.72□□□□□ -1.49
CUX1-216ENST00000558469 Q8N377 158 aa5.72□□□□□ -1.49
CUX1-216ENST00000558469 A0A087X002 238 aa5.71□□□□□ -1.5
CUX1-216ENST00000558469 CRYGAP11844 174 aa5.71□□□□□ -1.5
CUX1-216ENST00000558469 SPRR1BP22528 89 aa5.71□□□□□ -1.5
CUX1-216ENST00000558469 FAM229BQ4G0N7 80 aa5.71□□□□□ -1.5
CUX1-216ENST00000558469 ORMDL1Q9P0S3 153 aa5.71□□□□□ -1.5
CUX1-216ENST00000558469 SPCS1Q9Y6A9 102 aa5.71□□□□□ -1.5
CUX1-216ENST00000558469 LCE1DQ5T752 114 aa5.7□□□□□ -1.5
CUX1-216ENST00000558469 C3orf22Q8N5N4 141 aa5.7□□□□□ -1.5
CUX1-216ENST00000558469 PRR26Q8N8Z3 221 aa5.7□□□□□ -1.5
CUX1-216ENST00000558469 LINC01600Q96MT4 127 aa5.7□□□□□ -1.5
CUX1-216ENST00000558469 IGLV9-49A0A0B4J1Y8 123 aa5.69□□□□□ -1.5
CUX1-216ENST00000558469 H3BMG7 143 aa5.69□□□□□ -1.5
CUX1-216ENST00000558469 PPDPFLQ8WWR9 84 aa5.69□□□□□ -1.5
CUX1-216ENST00000558469 LAMTOR3Q9UHA4 124 aa5.69□□□□□ -1.5
CUX1-216ENST00000558469 OXTP01178 125 aa5.68□□□□□ -1.5
CUX1-216ENST00000558469 BAALC-AS2P0C853 105 aa5.68□□□□□ -1.5
CUX1-216ENST00000558469 KRTAP13-2Q52LG2 175 aa5.68□□□□□ -1.5
CUX1-216ENST00000558469 SMIM29Q86T20 159 aa5.68□□□□□ -1.5
CUX1-216ENST00000558469 C9JAW5 83 aa5.67□□□□□ -1.5
CUX1-216ENST00000558469 H3BQ85 93 aa5.67□□□□□ -1.5
CUX1-216ENST00000558469 K7EP34 96 aa5.67□□□□□ -1.5
CUX1-216ENST00000558469 TMEM256-PLSCR3K7ERE1 68 aa5.67□□□□□ -1.5
CUX1-216ENST00000558469 LCE4AQ5TA78 99 aa5.67□□□□□ -1.5
CUX1-216ENST00000558469 C9orf153Q5TBE3 101 aa5.67□□□□□ -1.5
CUX1-216ENST00000558469 ABCA13Q86UQ4 5058 aa5.66□□□□□ -1.5
CUX1-216ENST00000558469 F8WEM9 126 aa5.66□□□□□ -1.5
CUX1-216ENST00000558469 NDUFV3P56181 108 aaKnown RBP5.66□□□□□ -1.5
CUX1-216ENST00000558469 MOBPQ13875 183 aa5.66□□□□□ -1.5
CUX1-216ENST00000558469 TYMSOSQ8TAI1 123 aa5.66□□□□□ -1.5
CUX1-216ENST00000558469 KRTAP29-1A8MX34 341 aaPredicted RBP5.65□□□□□ -1.5
CUX1-216ENST00000558469 KRTAP10-8P60410 259 aa5.65□□□□□ -1.5
CUX1-216ENST00000558469 GTF2H5Q6ZYL4 71 aa5.65□□□□□ -1.5
CUX1-216ENST00000558469 MTURNQ8N3F0 131 aa5.65□□□□□ -1.5
CUX1-216ENST00000558469 LRP1Q07954 4544 aaKnown RBP5.64□□□□□ -1.51
CUX1-216ENST00000558469 Q8NBF4 154 aa5.64□□□□□ -1.51
CUX1-216ENST00000558469 MYCBP2O75592 4640 aa5.64□□□□□ -1.51
CUX1-216ENST00000558469 A0A1B0GV72 72 aa5.63□□□□□ -1.51
CUX1-216ENST00000558469 A0A1B0GV90 55 aa5.63□□□□□ -1.51
CUX1-216ENST00000558469 MT1HL1P0DM35 61 aa5.63□□□□□ -1.51
CUX1-216ENST00000558469 UBE2V1Q13404 147 aa5.63□□□□□ -1.51
CUX1-216ENST00000558469 SSBP3-AS1Q7Z2R9 100 aa5.63□□□□□ -1.51
CUX1-216ENST00000558469 ANKRD29Q8N6D5 301 aa5.63□□□□□ -1.51
CUX1-216ENST00000558469 FAT3Q8TDW7 4589 aa5.62□□□□□ -1.51
CUX1-216ENST00000558469 H3BT86 120 aa5.62□□□□□ -1.51
CUX1-216ENST00000558469 IGLV8-61A0A075B6I0 122 aa5.61□□□□□ -1.51
CUX1-216ENST00000558469 A0A0G2JQZ4 141 aa5.61□□□□□ -1.51
CUX1-216ENST00000558469 KRTAP4-7Q9BYR0 210 aa5.61□□□□□ -1.51
CUX1-216ENST00000558469 PCLOQ9Y6V0 5065 aa5.6□□□□□ -1.51
CUX1-216ENST00000558469 PRO0461Q9UI25 63 aa5.6□□□□□ -1.51
CUX1-216ENST00000558469 TNXBP22105 4242 aa5.59□□□□□ -1.51
CUX1-216ENST00000558469 RBM3P98179 157 aaKnown RBP5.59□□□□□ -1.51
CUX1-216ENST00000558469 Q6JHZ5 121 aa5.59□□□□□ -1.51
CUX1-216ENST00000558469 IGFL1Q6UW32 110 aa5.59□□□□□ -1.51
CUX1-216ENST00000558469 LINC00304Q8N9R0 145 aa5.59□□□□□ -1.51
CUX1-216ENST00000558469 F8W1H4 67 aa5.58□□□□□ -1.52
CUX1-216ENST00000558469 JMJD7-PLA2G4BH0Y9G9 81 aa5.58□□□□□ -1.52
CUX1-216ENST00000558469 HRCT1Q6UXD1 115 aa5.58□□□□□ -1.52
CUX1-216ENST00000558469 KRTAP9-7A8MTY7 169 aa5.57□□□□□ -1.52
CUX1-216ENST00000558469 SPAG11AQ6PDA7 123 aa5.56□□□□□ -1.52
CUX1-216ENST00000558469 OBSCN-AS1Q96MR7 158 aa5.56□□□□□ -1.52
CUX1-216ENST00000558469 DSCR8Q96T75 97 aa5.56□□□□□ -1.52
CUX1-216ENST00000558469 C14orf132Q9NPU4 83 aa5.55□□□□□ -1.52
CUX1-216ENST00000558469 DMBT1Q9UGM3 2413 aaPredicted RBP5.55□□□□□ -1.52
CUX1-216ENST00000558469 TRBV7-4A0A0J9YYF1 115 aa5.54□□□□□ -1.52
CUX1-216ENST00000558469 SPINK1P00995 79 aa5.54□□□□□ -1.52
CUX1-216ENST00000558469 CD164Q04900 197 aa5.54□□□□□ -1.52
CUX1-216ENST00000558469 CCKP06307 115 aa5.53□□□□□ -1.52
CUX1-216ENST00000558469 TEN1Q86WV5 123 aa5.53□□□□□ -1.52
CUX1-216ENST00000558469 VPS25Q9BRG1 176 aa5.53□□□□□ -1.52
CUX1-216ENST00000558469 LOC110117498A0A087WWA1 95 aa5.52□□□□□ -1.53
CUX1-216ENST00000558469 A0A1W2PNM2 257 aa5.52□□□□□ -1.53
CUX1-216ENST00000558469 ETDBQ3ZM63 59 aa5.52□□□□□ -1.53
CUX1-216ENST00000558469 Q6Q795 121 aa5.52□□□□□ -1.53
CUX1-216ENST00000558469 Q6ZQT0 140 aa5.52□□□□□ -1.53
CUX1-216ENST00000558469 KRTAP4-9Q9BYQ8 210 aa5.52□□□□□ -1.53
CUX1-216ENST00000558469 TRBV7-7A0A0K0K1E9 115 aa5.51□□□□□ -1.53
CUX1-216ENST00000558469 PDE6GP18545 87 aa5.51□□□□□ -1.53
CUX1-216ENST00000558469 RPS29P62273 56 aaKnown RBP5.5□□□□□ -1.53
CUX1-216ENST00000558469 LIMD2Q9BT23 127 aa5.5□□□□□ -1.53
CUX1-216ENST00000558469 A0A087WSZ3 146 aa5.48□□□□□ -1.53
CUX1-216ENST00000558469 RETNLBQ9BQ08 111 aa5.47□□□□□ -1.53
CUX1-216ENST00000558469 C21orf62-AS1Q17RA5 79 aa5.46□□□□□ -1.54
CUX1-216ENST00000558469 Q5XG85 94 aa5.46□□□□□ -1.54
CUX1-216ENST00000558469 SS18L2Q9UHA2 77 aa5.46□□□□□ -1.54
CUX1-216ENST00000558469 A0A1B0GW54 56 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms