RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 WFDC13Q8IUB5 93 aa10.19□□□□□ -0.78
SHMT2-231ENST00000557433 PRR15Q8IV56 129 aa10.19□□□□□ -0.78
SHMT2-231ENST00000557433 A0A1W2PNN7 141 aa10.17□□□□□ -0.78
SHMT2-231ENST00000557433 F8P00451 2351 aa10.17□□□□□ -0.78
SHMT2-231ENST00000557433 A8MWP4 228 aa10.17□□□□□ -0.78
SHMT2-231ENST00000557433 KRTAP24-1Q3LI83 254 aa10.17□□□□□ -0.78
SHMT2-231ENST00000557433 CASC2Q6XLA1 102 aa10.17□□□□□ -0.78
SHMT2-231ENST00000557433 TRRAPQ9Y4A5 3859 aa10.16□□□□□ -0.78
SHMT2-231ENST00000557433 C1orf195Q5TG92 126 aa10.15□□□□□ -0.78
SHMT2-231ENST00000557433 B9D2Q9BPU9 175 aa10.15□□□□□ -0.78
SHMT2-231ENST00000557433 IGKV2-24A0A0C4DH68 120 aa10.15□□□□□ -0.79
SHMT2-231ENST00000557433 A0A0G2JQZ4 141 aa10.15□□□□□ -0.79
SHMT2-231ENST00000557433 DEFB116Q30KQ4 102 aa10.15□□□□□ -0.79
SHMT2-231ENST00000557433 LINC00208Q96KT6 92 aa10.15□□□□□ -0.79
SHMT2-231ENST00000557433 LINC00472Q9H8W2 130 aa10.14□□□□□ -0.79
SHMT2-231ENST00000557433 H0Y9P7 68 aa10.13□□□□□ -0.79
SHMT2-231ENST00000557433 TENM3Q9P273 2699 aa10.11□□□□□ -0.79
SHMT2-231ENST00000557433 DNAH1Q9P2D7 4330 aa10.11□□□□□ -0.79
SHMT2-231ENST00000557433 LRCOL1A6NCL2 159 aa10.11□□□□□ -0.79
SHMT2-231ENST00000557433 RPL37AP61513 92 aaKnown RBP10.1□□□□□ -0.79
SHMT2-231ENST00000557433 PKD1L1Q8TDX9 2849 aa10.08□□□□□ -0.8
SHMT2-231ENST00000557433 PRR4Q16378 134 aa10.07□□□□□ -0.8
SHMT2-231ENST00000557433 PHF5AQ7RTV0 110 aaKnown RBP10.07□□□□□ -0.8
SHMT2-231ENST00000557433 KRTAP1-5Q9BYS1 174 aa10.06□□□□□ -0.8
SHMT2-231ENST00000557433 C9orf163Q8N9P6 203 aa10.05□□□□□ -0.8
SHMT2-231ENST00000557433 LIMD2Q9BT23 127 aa10.05□□□□□ -0.8
SHMT2-231ENST00000557433 K7EIL1 84 aa10.03□□□□□ -0.8
SHMT2-231ENST00000557433 PSPHP1O15172 72 aa10.03□□□□□ -0.8
SHMT2-231ENST00000557433 MMP24-AS1A0A0U1RRL7 71 aa10.02□□□□□ -0.81
SHMT2-231ENST00000557433 UBE2DNLQ8IWF7 75 aa10.02□□□□□ -0.81
SHMT2-231ENST00000557433 DNAH3Q8TD57 4116 aa10.02□□□□□ -0.81
SHMT2-231ENST00000557433 TP53AIP1Q9HCN2 124 aa10.02□□□□□ -0.81
SHMT2-231ENST00000557433 KRTAP11-1Q8IUC1 163 aa10.01□□□□□ -0.81
SHMT2-231ENST00000557433 KRTAP13-1Q8IUC0 172 aa10□□□□□ -0.81
SHMT2-231ENST00000557433 CHTF8P0CG12 524 aa9.99□□□□□ -0.81
SHMT2-231ENST00000557433 MOBPQ13875 183 aa9.99□□□□□ -0.81
SHMT2-231ENST00000557433 IGLV7-46A0A075B6I9 117 aa9.98□□□□□ -0.81
SHMT2-231ENST00000557433 A8MUN3 132 aa9.98□□□□□ -0.81
SHMT2-231ENST00000557433 ASB16-AS1Q495Z4 193 aa9.98□□□□□ -0.81
SHMT2-231ENST00000557433 Q8N9P0 234 aaPredicted RBP9.97□□□□□ -0.81
SHMT2-231ENST00000557433 APLNQ9ULZ1 77 aa9.97□□□□□ -0.81
SHMT2-231ENST00000557433 PRB2P02812 416 aaPredicted RBP9.96□□□□□ -0.81
SHMT2-231ENST00000557433 Q5VV11 94 aa9.96□□□□□ -0.81
SHMT2-231ENST00000557433 ANK2Q01484 3957 aa9.94□□□□□ -0.82
SHMT2-231ENST00000557433 CMYA5Q8N3K9 4069 aa9.94□□□□□ -0.82
SHMT2-231ENST00000557433 LINC00483Q53H64 154 aa9.92□□□□□ -0.82
SHMT2-231ENST00000557433 PMAIP1Q13794 54 aa9.92□□□□□ -0.82
SHMT2-231ENST00000557433 Q6ZR54 194 aa9.92□□□□□ -0.82
SHMT2-231ENST00000557433 Q96NJ1 140 aa9.92□□□□□ -0.82
SHMT2-231ENST00000557433 ZNF706Q9Y5V0 76 aaPredicted RBP9.92□□□□□ -0.82
SHMT2-231ENST00000557433 COA5Q86WW8 74 aa9.9□□□□□ -0.82
SHMT2-231ENST00000557433 LOC101927531A0A1B0GV80 90 aa9.9□□□□□ -0.83
SHMT2-231ENST00000557433 C8orf17Q9NRJ1 99 aa9.9□□□□□ -0.83
SHMT2-231ENST00000557433 Q75L30 129 aa9.88□□□□□ -0.83
SHMT2-231ENST00000557433 NBDYA0A0U1RRE5 68 aa9.87□□□□□ -0.83
SHMT2-231ENST00000557433 CHKB-CPT1BH3BT56 60 aa9.87□□□□□ -0.83
SHMT2-231ENST00000557433 PRR15LQ9BU68 103 aa9.87□□□□□ -0.83
SHMT2-231ENST00000557433 HUWE1Q7Z6Z7 4374 aaKnown RBP9.86□□□□□ -0.83
SHMT2-231ENST00000557433 A0A1B0GVX0 72 aa9.86□□□□□ -0.83
SHMT2-231ENST00000557433 KRTAP21-3Q3LHN1 58 aa9.86□□□□□ -0.83
SHMT2-231ENST00000557433 SPACA4Q8TDM5 124 aa9.86□□□□□ -0.83
SHMT2-231ENST00000557433 CDK2AP2O75956 126 aa9.84□□□□□ -0.83
SHMT2-231ENST00000557433 IGLV9-49A0A0B4J1Y8 123 aa9.84□□□□□ -0.83
SHMT2-231ENST00000557433 Q6ZRN7 208 aaPredicted RBP9.84□□□□□ -0.83
SHMT2-231ENST00000557433 CD164Q04900 197 aa9.82□□□□□ -0.84
SHMT2-231ENST00000557433 STAB1Q9NY15 2570 aa9.81□□□□□ -0.84
SHMT2-231ENST00000557433 PANO1I0J062 215 aa9.81□□□□□ -0.84
SHMT2-231ENST00000557433 MRPL34Q9BQ48 92 aaKnown RBP9.81□□□□□ -0.84
SHMT2-231ENST00000557433 LINC01558Q9Y6Z2 57 aa9.8□□□□□ -0.84
SHMT2-231ENST00000557433 NUPR2A6NF83 97 aa9.79□□□□□ -0.84
SHMT2-231ENST00000557433 SEC61GP60059 68 aa9.79□□□□□ -0.84
SHMT2-231ENST00000557433 PCOTHQ58A44 107 aa9.79□□□□□ -0.84
SHMT2-231ENST00000557433 WWC2-AS2Q96NR7 200 aa9.79□□□□□ -0.84
SHMT2-231ENST00000557433 ATP11AUNQ6ZP68 121 aa9.78□□□□□ -0.84
SHMT2-231ENST00000557433 IGHV6-1A0A0B4J1U7 121 aa9.77□□□□□ -0.85
SHMT2-231ENST00000557433 NOTCH1P46531 2555 aa9.76□□□□□ -0.85
SHMT2-231ENST00000557433 PLAC8Q9NZF1 115 aa9.76□□□□□ -0.85
SHMT2-231ENST00000557433 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.76□□□□□ -0.85
SHMT2-231ENST00000557433 NDUFS5O43920 106 aa9.76□□□□□ -0.85
SHMT2-231ENST00000557433 A6NED7 52 aa9.74□□□□□ -0.85
SHMT2-231ENST00000557433 MDFIQ99750 246 aa9.74□□□□□ -0.85
SHMT2-231ENST00000557433 FBN1P35555 2871 aaKnown RBP9.74□□□□□ -0.85
SHMT2-231ENST00000557433 IGLV5-52A0A0A0MRZ9 124 aa9.74□□□□□ -0.85
SHMT2-231ENST00000557433 ZNF861PO60384 105 aa9.72□□□□□ -0.85
SHMT2-231ENST00000557433 CDC42SE1Q9NRR8 79 aa9.72□□□□□ -0.85
SHMT2-231ENST00000557433 A0A087WTM6 91 aa9.7□□□□□ -0.86
SHMT2-231ENST00000557433 NBEAL1Q6ZS30 2694 aa9.7□□□□□ -0.86
SHMT2-231ENST00000557433 LCA10Q71F78 164 aa9.7□□□□□ -0.86
SHMT2-231ENST00000557433 PSORS1C2Q9UIG4 136 aa9.7□□□□□ -0.86
SHMT2-231ENST00000557433 DNAH10Q8IVF4 4471 aa9.7□□□□□ -0.86
SHMT2-231ENST00000557433 HRES1P13985 223 aa9.69□□□□□ -0.86
SHMT2-231ENST00000557433 A8MU10 97 aa9.68□□□□□ -0.86
SHMT2-231ENST00000557433 DYNC2H1Q8NCM8 4307 aaKnown RBP9.67□□□□□ -0.86
SHMT2-231ENST00000557433 COL6A5A8TX70 2615 aa9.67□□□□□ -0.86
SHMT2-231ENST00000557433 SPAG11AQ6PDA7 123 aa9.66□□□□□ -0.86
SHMT2-231ENST00000557433 KTN1-AS1Q86SY8 53 aa9.66□□□□□ -0.86
SHMT2-231ENST00000557433 C8orf87E5RJ46 101 aa9.65□□□□□ -0.86
SHMT2-231ENST00000557433 DNAH9Q9NYC9 4486 aa9.65□□□□□ -0.86
SHMT2-231ENST00000557433 RTL8CO15255 209 aa9.64□□□□□ -0.87
SHMT2-231ENST00000557433 SPTSSBQ8NFR3 76 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms