RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 COX17Q14061 63 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 H1FX-AS1Q4G0G2 97 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 DEFB123Q8N688 67 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 LYSTQ99698 3801 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 MRPL34Q9BQ48 92 aaKnown RBP0.19□□□□□ -2.38
VPS29-205ENST00000548539 NMES1Q9C002 83 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 ABRACLQ9P1F3 81 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 APLNQ9ULZ1 77 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 VWFP04275 2813 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 CREBBPQ92793 2442 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 NRXN3Q9Y4C0 1643 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 CSMD3Q7Z407 3707 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 NBASA2RRP1 2371 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 DCHS2Q6V1P9 2916 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 CHD6Q8TD26 2715 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 NWD1Q149M9 1564 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 ERCC6L2Q5T890 1561 aa0.19□□□□□ -2.38
VPS29-205ENST00000548539 LRRC37AA6NMS7 1700 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 CDC42BPAQ5VT25 1732 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 ATRQ13535 2644 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 TNRC18O15417 2968 aaPredicted RBP0.18□□□□□ -2.38
VPS29-205ENST00000548539 SYCP2Q9BX26 1530 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 UBR5O95071 2799 aaPredicted RBP0.18□□□□□ -2.38
VPS29-205ENST00000548539 POLQO75417 2590 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 LRP1Q07954 4544 aaKnown RBP0.18□□□□□ -2.38
VPS29-205ENST00000548539 OTOGQ6ZRI0 2925 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 ANK2Q01484 3957 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 C3P01024 1663 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 FSIP2Q5CZC0 6907 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 PDZD2O15018 2839 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 PIN1P1O15428 100 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 NDUFB1O75438 58 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 DEFB130BP0DP73 79 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 DEFB130AP0DP74 79 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 SPRR1BP22528 89 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 RPS27P42677 84 aaKnown RBP0.18□□□□□ -2.38
VPS29-205ENST00000548539 RPS27LQ71UM5 84 aaKnown RBP0.18□□□□□ -2.38
VPS29-205ENST00000548539 LINC00308Q8TCZ7 52 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 UBL5Q9BZL1 73 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 TP53AIP1Q9HCN2 124 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 SRRM2Q9UQ35 2752 aaKnown RBP0.18□□□□□ -2.38
VPS29-205ENST00000548539 DMBT1Q9UGM3 2413 aaPredicted RBP0.18□□□□□ -2.38
VPS29-205ENST00000548539 TRANK1O15050 2925 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 WNK1Q9H4A3 2382 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 KIAA0586Q9BVV6 1533 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 ACACAQ13085 2346 aa0.18□□□□□ -2.38
VPS29-205ENST00000548539 MAST4O15021 2626 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 ABCA2Q9BZC7 2435 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 FAT2Q9NYQ8 4349 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 DEFB131BA0A096LNP1 70 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 SPTY2D1-AS1A0A0U1RR47 76 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 MAP1BP46821 2468 aaKnown RBP0.17□□□□□ -2.38
VPS29-205ENST00000548539 COL7A1Q02388 2944 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 WFDC13Q8IUB5 93 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 Q8IZM0 81 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 DEFB105AQ8NG35 78 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 CHD8Q9HCK8 2581 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 LMO7Q8WWI1 1683 aa0.17□□□□□ -2.38
VPS29-205ENST00000548539 PKD1L2Q7Z442 2459 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 ADCY10Q96PN6 1610 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 MGAQ8IWI9 3026 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 DNAH11Q96DT5 4516 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 SPTA1P02549 2419 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 ABCC8Q09428 1581 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 NBEAL2Q6ZNJ1 2754 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 PLNP26678 52 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 SNRPGP62308 76 aaKnown RBP0.16□□□□□ -2.38
VPS29-205ENST00000548539 SERF2P84101 59 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 DEFB114Q30KQ6 69 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 DEFB104AQ8WTQ1 72 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 PRO0255Q9UI72 69 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 TRPM2O94759 1503 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 A0A0C4DFX4 3053 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 PIEZO1Q92508 2521 aa0.16□□□□□ -2.38
VPS29-205ENST00000548539 CEP290O15078 2479 aa0.15□□□□□ -2.38
VPS29-205ENST00000548539 PRKDCP78527 4128 aaKnown RBP0.15□□□□□ -2.38
VPS29-205ENST00000548539 APC2O95996 2303 aa0.15□□□□□ -2.38
VPS29-205ENST00000548539 PKD1L1Q8TDX9 2849 aa0.15□□□□□ -2.38
VPS29-205ENST00000548539 COL12A1Q99715 3063 aa0.15□□□□□ -2.38
VPS29-205ENST00000548539 HIVEP3Q5T1R4 2406 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 DMXL1Q9Y485 3027 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 TENM2Q9NT68 2774 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 VPS13DQ5THJ4 4388 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 TNXBP22105 4242 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 COL6A5A8TX70 2615 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 SACSQ9NZJ4 4579 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 LYNX1G3V0Z9 82 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 H0YGX0 51 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 CCL22O00626 93 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 ZZEF1O43149 2961 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 IAPPP10997 89 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 COX6B2Q6YFQ2 88 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 WFDC10BQ8IUB3 73 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 LEAP2Q969E1 77 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 KAAG1Q9UBP8 84 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 S4R3F8 94 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 TENM4Q6N022 2769 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 MYCBP2O75592 4640 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 HECTD1Q9ULT8 2610 aa0.15□□□□□ -2.39
VPS29-205ENST00000548539 FRYQ5TBA9 3013 aa0.14□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms