RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 C4orf48Q5BLP8 95 aa11.81□□□□□ -0.52
HMGA2-211ENST00000545998 CLEC2BQ92478 149 aa11.8□□□□□ -0.52
HMGA2-211ENST00000545998 COX6CP09669 75 aa11.79□□□□□ -0.52
HMGA2-211ENST00000545998 PPDPFLQ8WWR9 84 aa11.78□□□□□ -0.52
HMGA2-211ENST00000545998 OCIAD2Q56VL3 154 aa11.77□□□□□ -0.53
HMGA2-211ENST00000545998 SPINK1P00995 79 aa11.76□□□□□ -0.53
HMGA2-211ENST00000545998 LRP2P98164 4655 aa11.75□□□□□ -0.53
HMGA2-211ENST00000545998 BATFQ16520 125 aa11.75□□□□□ -0.53
HMGA2-211ENST00000545998 SCGB1C2P0DMR2 95 aa11.72□□□□□ -0.53
HMGA2-211ENST00000545998 F8WEM9 126 aa11.71□□□□□ -0.53
HMGA2-211ENST00000545998 RPS29P62273 56 aaKnown RBP11.71□□□□□ -0.53
HMGA2-211ENST00000545998 LPAP08519 4548 aa11.71□□□□□ -0.53
HMGA2-211ENST00000545998 SNHG12Q9BXW3 62 aa11.71□□□□□ -0.54
HMGA2-211ENST00000545998 IGLV8-61A0A075B6I0 122 aa11.69□□□□□ -0.54
HMGA2-211ENST00000545998 DNAL4O96015 105 aa11.69□□□□□ -0.54
HMGA2-211ENST00000545998 NAA38Q9BRA0 125 aaKnown RBP11.69□□□□□ -0.54
HMGA2-211ENST00000545998 LST1O00453 97 aa11.68□□□□□ -0.54
HMGA2-211ENST00000545998 GHRHP01286 108 aa11.68□□□□□ -0.54
HMGA2-211ENST00000545998 PRR4Q16378 134 aa11.68□□□□□ -0.54
HMGA2-211ENST00000545998 RETNLBQ9BQ08 111 aa11.68□□□□□ -0.54
HMGA2-211ENST00000545998 A0A0G2JQZ4 141 aa11.67□□□□□ -0.54
HMGA2-211ENST00000545998 TRACP01848 142 aa11.67□□□□□ -0.54
HMGA2-211ENST00000545998 CD164Q04900 197 aa11.67□□□□□ -0.54
HMGA2-211ENST00000545998 HRCT1Q6UXD1 115 aa11.67□□□□□ -0.54
HMGA2-211ENST00000545998 ORMDL1Q9P0S3 153 aa11.66□□□□□ -0.54
HMGA2-211ENST00000545998 FABP2P12104 132 aa11.63□□□□□ -0.55
HMGA2-211ENST00000545998 NDUFV3P56181 108 aaKnown RBP11.63□□□□□ -0.55
HMGA2-211ENST00000545998 Q6JHZ5 121 aa11.63□□□□□ -0.55
HMGA2-211ENST00000545998 H3BQ85 93 aa11.62□□□□□ -0.55
HMGA2-211ENST00000545998 IGFL1Q6UW32 110 aa11.62□□□□□ -0.55
HMGA2-211ENST00000545998 H3BUT2 72 aa11.61□□□□□ -0.55
HMGA2-211ENST00000545998 TAX1BP3O14907 124 aa11.6□□□□□ -0.55
HMGA2-211ENST00000545998 TCL1BO95988 128 aa11.6□□□□□ -0.55
HMGA2-211ENST00000545998 TMEM256-PLSCR3K7ERE1 68 aa11.59□□□□□ -0.55
HMGA2-211ENST00000545998 LIMD2Q9BT23 127 aa11.59□□□□□ -0.55
HMGA2-211ENST00000545998 C9orf118A6NHY6 69 aa11.58□□□□□ -0.55
HMGA2-211ENST00000545998 ATXN8Q156A1 80 aa11.58□□□□□ -0.55
HMGA2-211ENST00000545998 UBR4Q5T4S7 5183 aa11.58□□□□□ -0.56
HMGA2-211ENST00000545998 H3BMG7 143 aa11.57□□□□□ -0.56
HMGA2-211ENST00000545998 LYRM7Q5U5X0 104 aa11.57□□□□□ -0.56
HMGA2-211ENST00000545998 FP248Q71RG6 208 aaPredicted RBP11.57□□□□□ -0.56
HMGA2-211ENST00000545998 Q5XG85 94 aa11.55□□□□□ -0.56
HMGA2-211ENST00000545998 IGLV7-46A0A075B6I9 117 aa11.54□□□□□ -0.56
HMGA2-211ENST00000545998 UBE2V1Q13404 147 aa11.54□□□□□ -0.56
HMGA2-211ENST00000545998 TRBV20-1A0A075B6N2 111 aa11.53□□□□□ -0.56
HMGA2-211ENST00000545998 A0A1W2PPM0 123 aa11.52□□□□□ -0.57
HMGA2-211ENST00000545998 PCP4L1A6NKN8 68 aa11.52□□□□□ -0.57
HMGA2-211ENST00000545998 BAALC-AS2P0C853 105 aa11.51□□□□□ -0.57
HMGA2-211ENST00000545998 TRBV7-7A0A0K0K1E9 115 aa11.5□□□□□ -0.57
HMGA2-211ENST00000545998 COL5A1-AS1Q5SY13 56 aa11.5□□□□□ -0.57
HMGA2-211ENST00000545998 Q6Q795 121 aa11.49□□□□□ -0.57
HMGA2-211ENST00000545998 A0A1B0GV72 72 aa11.48□□□□□ -0.57
HMGA2-211ENST00000545998 TPRXLQ17RH7 258 aa11.47□□□□□ -0.57
HMGA2-211ENST00000545998 ANKRD29Q8N6D5 301 aa11.47□□□□□ -0.57
HMGA2-211ENST00000545998 TEN1Q86WV5 123 aa11.45□□□□□ -0.58
HMGA2-211ENST00000545998 C1orf195Q5TG92 126 aa11.44□□□□□ -0.58
HMGA2-211ENST00000545998 A0A1W2PNM2 257 aa11.42□□□□□ -0.58
HMGA2-211ENST00000545998 C9JAW5 83 aa11.42□□□□□ -0.58
HMGA2-211ENST00000545998 ASB16-AS1Q495Z4 193 aa11.42□□□□□ -0.58
HMGA2-211ENST00000545998 KRTAP13-3Q3SY46 172 aa11.41□□□□□ -0.58
HMGA2-211ENST00000545998 RBM3P98179 157 aaKnown RBP11.41□□□□□ -0.58
HMGA2-211ENST00000545998 TRBV7-4A0A0J9YYF1 115 aa11.39□□□□□ -0.59
HMGA2-211ENST00000545998 SPCS1Q9Y6A9 102 aa11.37□□□□□ -0.59
HMGA2-211ENST00000545998 DSCR8Q96T75 97 aa11.37□□□□□ -0.59
HMGA2-211ENST00000545998 CDIP1Q9H305 208 aa11.37□□□□□ -0.59
HMGA2-211ENST00000545998 A0A087WSZ3 146 aa11.36□□□□□ -0.59
HMGA2-211ENST00000545998 SS18L2Q9UHA2 77 aa11.36□□□□□ -0.59
HMGA2-211ENST00000545998 CCKP06307 115 aa11.35□□□□□ -0.59
HMGA2-211ENST00000545998 JMJD7-PLA2G4BH0Y9G9 81 aa11.34□□□□□ -0.59
HMGA2-211ENST00000545998 H3BT86 120 aa11.33□□□□□ -0.6
HMGA2-211ENST00000545998 MTURNQ8N3F0 131 aa11.33□□□□□ -0.6
HMGA2-211ENST00000545998 MUC17Q685J3 4493 aa11.31□□□□□ -0.6
HMGA2-211ENST00000545998 RNF213Q63HN8 5207 aa11.3□□□□□ -0.6
HMGA2-211ENST00000545998 OBSCN-AS1Q96MR7 158 aa11.3□□□□□ -0.6
HMGA2-211ENST00000545998 K7EP34 96 aa11.28□□□□□ -0.6
HMGA2-211ENST00000545998 VPS25Q9BRG1 176 aa11.28□□□□□ -0.6
HMGA2-211ENST00000545998 LOC110117498A0A087WWA1 95 aa11.27□□□□□ -0.61
HMGA2-211ENST00000545998 Q6ZQT0 140 aa11.27□□□□□ -0.61
HMGA2-211ENST00000545998 Q96NJ1 140 aa11.26□□□□□ -0.61
HMGA2-211ENST00000545998 C14orf132Q9NPU4 83 aa11.25□□□□□ -0.61
HMGA2-211ENST00000545998 C9orf92A6NGG3 77 aa11.24□□□□□ -0.61
HMGA2-211ENST00000545998 PDE6GP18545 87 aa11.24□□□□□ -0.61
HMGA2-211ENST00000545998 SMCPP49901 116 aaPredicted RBP11.22□□□□□ -0.61
HMGA2-211ENST00000545998 XP32Q5T750 250 aa11.22□□□□□ -0.61
HMGA2-211ENST00000545998 PRO0461Q9UI25 63 aa11.21□□□□□ -0.61
HMGA2-211ENST00000545998 MUC2Q02817 5179 aa11.2□□□□□ -0.62
HMGA2-211ENST00000545998 GTF2H5Q6ZYL4 71 aa11.19□□□□□ -0.62
HMGA2-211ENST00000545998 C21orf62-AS1Q17RA5 79 aa11.18□□□□□ -0.62
HMGA2-211ENST00000545998 A0A1B0GW54 56 aa11.17□□□□□ -0.62
HMGA2-211ENST00000545998 LINC00472Q9H8W2 130 aa11.17□□□□□ -0.62
HMGA2-211ENST00000545998 IGKV4-1P06312 121 aa11.12□□□□□ -0.63
HMGA2-211ENST00000545998 DEFB116Q30KQ4 102 aa11.11□□□□□ -0.63
HMGA2-211ENST00000545998 SIGMAR1Q99720 223 aa11.11□□□□□ -0.63
HMGA2-211ENST00000545998 SEC61BP60468 96 aaKnown RBP11.08□□□□□ -0.64
HMGA2-211ENST00000545998 F8W1H4 67 aa11.07□□□□□ -0.64
HMGA2-211ENST00000545998 J3KT08 172 aa11.03□□□□□ -0.64
HMGA2-211ENST00000545998 RPL37P61927 97 aaKnown RBP11.02□□□□□ -0.65
HMGA2-211ENST00000545998 DSCR10P59022 87 aa11.01□□□□□ -0.65
HMGA2-211ENST00000545998 NREPQ16612 68 aa11□□□□□ -0.65
HMGA2-211ENST00000545998 LINC00313P59037 77 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 115.9 ms