RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 KRTAP13-2Q52LG2 175 aa10.31□□□□□ -0.76
CLSTN3-210ENST00000540931 Q8NBF4 154 aa10.31□□□□□ -0.76
CLSTN3-210ENST00000540931 TRACP01848 142 aa10.3□□□□□ -0.76
CLSTN3-210ENST00000540931 IGLV9-49A0A0B4J1Y8 123 aa10.29□□□□□ -0.76
CLSTN3-210ENST00000540931 C9orf153Q5TBE3 101 aa10.29□□□□□ -0.76
CLSTN3-210ENST00000540931 LINC00304Q8N9R0 145 aa10.29□□□□□ -0.76
CLSTN3-210ENST00000540931 SNHG12Q9BXW3 62 aa10.29□□□□□ -0.76
CLSTN3-210ENST00000540931 LINC01547P58512 204 aaPredicted RBP10.28□□□□□ -0.76
CLSTN3-210ENST00000540931 Q8N377 158 aa10.28□□□□□ -0.76
CLSTN3-210ENST00000540931 TRBV20-1A0A075B6N2 111 aa10.27□□□□□ -0.77
CLSTN3-210ENST00000540931 MOBPQ13875 183 aa10.27□□□□□ -0.77
CLSTN3-210ENST00000540931 C3orf22Q8N5N4 141 aa10.27□□□□□ -0.77
CLSTN3-210ENST00000540931 FAM218AQ96MZ4 157 aa10.27□□□□□ -0.77
CLSTN3-210ENST00000540931 ORMDL1Q9P0S3 153 aa10.27□□□□□ -0.77
CLSTN3-210ENST00000540931 TMEM256-PLSCR3K7ERE1 68 aa10.26□□□□□ -0.77
CLSTN3-210ENST00000540931 ATXN8Q156A1 80 aa10.26□□□□□ -0.77
CLSTN3-210ENST00000540931 CLEC2BQ92478 149 aa10.26□□□□□ -0.77
CLSTN3-210ENST00000540931 LST1O00453 97 aa10.25□□□□□ -0.77
CLSTN3-210ENST00000540931 SPINK1P00995 79 aa10.25□□□□□ -0.77
CLSTN3-210ENST00000540931 COL5A1-AS1Q5SY13 56 aa10.25□□□□□ -0.77
CLSTN3-210ENST00000540931 C9orf118A6NHY6 69 aa10.24□□□□□ -0.77
CLSTN3-210ENST00000540931 RPS29P62273 56 aaKnown RBP10.24□□□□□ -0.77
CLSTN3-210ENST00000540931 Q6JHZ5 121 aa10.24□□□□□ -0.77
CLSTN3-210ENST00000540931 SMIM29Q86T20 159 aa10.23□□□□□ -0.77
CLSTN3-210ENST00000540931 CD164Q04900 197 aa10.22□□□□□ -0.77
CLSTN3-210ENST00000540931 H3BUT2 72 aa10.21□□□□□ -0.77
CLSTN3-210ENST00000540931 IGLV8-61A0A075B6I0 122 aa10.2□□□□□ -0.78
CLSTN3-210ENST00000540931 PCP4L1A6NKN8 68 aa10.2□□□□□ -0.78
CLSTN3-210ENST00000540931 FABP2P12104 132 aa10.2□□□□□ -0.78
CLSTN3-210ENST00000540931 TAX1BP3O14907 124 aa10.19□□□□□ -0.78
CLSTN3-210ENST00000540931 NDUFV3P56181 108 aaKnown RBP10.18□□□□□ -0.78
CLSTN3-210ENST00000540931 LRP2P98164 4655 aa10.17□□□□□ -0.78
CLSTN3-210ENST00000540931 UBE2V1Q13404 147 aa10.17□□□□□ -0.78
CLSTN3-210ENST00000540931 A0A1W2PPM0 123 aa10.16□□□□□ -0.78
CLSTN3-210ENST00000540931 LIMD2Q9BT23 127 aa10.16□□□□□ -0.78
CLSTN3-210ENST00000540931 RNF213Q63HN8 5207 aa10.16□□□□□ -0.78
CLSTN3-210ENST00000540931 TNXBP22105 4242 aa10.15□□□□□ -0.78
CLSTN3-210ENST00000540931 TCL1BO95988 128 aa10.15□□□□□ -0.78
CLSTN3-210ENST00000540931 NAA38Q9BRA0 125 aaKnown RBP10.14□□□□□ -0.79
CLSTN3-210ENST00000540931 H3BMG7 143 aa10.13□□□□□ -0.79
CLSTN3-210ENST00000540931 BAALC-AS2P0C853 105 aa10.12□□□□□ -0.79
CLSTN3-210ENST00000540931 C21orf62-AS1Q17RA5 79 aa10.09□□□□□ -0.79
CLSTN3-210ENST00000540931 Q5XG85 94 aa10.09□□□□□ -0.79
CLSTN3-210ENST00000540931 JMJD7-PLA2G4BH0Y9G9 81 aa10.08□□□□□ -0.8
CLSTN3-210ENST00000540931 ANKRD29Q8N6D5 301 aa10.08□□□□□ -0.8
CLSTN3-210ENST00000540931 Q6Q795 121 aa10.07□□□□□ -0.8
CLSTN3-210ENST00000540931 IGFL1Q6UW32 110 aa10.07□□□□□ -0.8
CLSTN3-210ENST00000540931 RBM3P98179 157 aaKnown RBP10.06□□□□□ -0.8
CLSTN3-210ENST00000540931 FP248Q71RG6 208 aaPredicted RBP10.06□□□□□ -0.8
CLSTN3-210ENST00000540931 TEN1Q86WV5 123 aa10.06□□□□□ -0.8
CLSTN3-210ENST00000540931 SPCS1Q9Y6A9 102 aa10.06□□□□□ -0.8
CLSTN3-210ENST00000540931 H3BT86 120 aa10.05□□□□□ -0.8
CLSTN3-210ENST00000540931 C9JAW5 83 aa10.04□□□□□ -0.8
CLSTN3-210ENST00000540931 DSCR8Q96T75 97 aa10.04□□□□□ -0.8
CLSTN3-210ENST00000540931 PDE6GP18545 87 aa10.03□□□□□ -0.8
CLSTN3-210ENST00000540931 GTF2H5Q6ZYL4 71 aa10.03□□□□□ -0.8
CLSTN3-210ENST00000540931 SS18L2Q9UHA2 77 aa10.03□□□□□ -0.8
CLSTN3-210ENST00000540931 TRBV7-7A0A0K0K1E9 115 aa10.01□□□□□ -0.81
CLSTN3-210ENST00000540931 HRCT1Q6UXD1 115 aa10.01□□□□□ -0.81
CLSTN3-210ENST00000540931 PRR4Q16378 134 aa10□□□□□ -0.81
CLSTN3-210ENST00000540931 TRBV7-4A0A0J9YYF1 115 aa9.99□□□□□ -0.81
CLSTN3-210ENST00000540931 A0A1B0GW54 56 aa9.98□□□□□ -0.81
CLSTN3-210ENST00000540931 ASB16-AS1Q495Z4 193 aa9.98□□□□□ -0.81
CLSTN3-210ENST00000540931 K7EP34 96 aa9.97□□□□□ -0.81
CLSTN3-210ENST00000540931 CCKP06307 115 aa9.94□□□□□ -0.82
CLSTN3-210ENST00000540931 IGLV7-46A0A075B6I9 117 aa9.93□□□□□ -0.82
CLSTN3-210ENST00000540931 LOC110117498A0A087WWA1 95 aa9.92□□□□□ -0.82
CLSTN3-210ENST00000540931 A0A0G2JQZ4 141 aa9.92□□□□□ -0.82
CLSTN3-210ENST00000540931 OBSCN-AS1Q96MR7 158 aa9.91□□□□□ -0.82
CLSTN3-210ENST00000540931 RETNLBQ9BQ08 111 aa9.91□□□□□ -0.82
CLSTN3-210ENST00000540931 F8W1H4 67 aa9.9□□□□□ -0.82
CLSTN3-210ENST00000540931 A0A1B0GV72 72 aa9.89□□□□□ -0.83
CLSTN3-210ENST00000540931 A0A1W2PNM2 257 aa9.89□□□□□ -0.83
CLSTN3-210ENST00000540931 TPRXLQ17RH7 258 aa9.89□□□□□ -0.83
CLSTN3-210ENST00000540931 A0A087WSZ3 146 aa9.88□□□□□ -0.83
CLSTN3-210ENST00000540931 C1orf195Q5TG92 126 aa9.86□□□□□ -0.83
CLSTN3-210ENST00000540931 Q6ZQT0 140 aa9.86□□□□□ -0.83
CLSTN3-210ENST00000540931 VPS25Q9BRG1 176 aa9.86□□□□□ -0.83
CLSTN3-210ENST00000540931 C14orf132Q9NPU4 83 aa9.84□□□□□ -0.83
CLSTN3-210ENST00000540931 MTURNQ8N3F0 131 aa9.82□□□□□ -0.84
CLSTN3-210ENST00000540931 PRO0461Q9UI25 63 aa9.82□□□□□ -0.84
CLSTN3-210ENST00000540931 CDIP1Q9H305 208 aa9.8□□□□□ -0.84
CLSTN3-210ENST00000540931 SMCPP49901 116 aaPredicted RBP9.78□□□□□ -0.84
CLSTN3-210ENST00000540931 LPAP08519 4548 aa9.77□□□□□ -0.85
CLSTN3-210ENST00000540931 J3KT08 172 aa9.76□□□□□ -0.85
CLSTN3-210ENST00000540931 KRTAP13-3Q3SY46 172 aa9.76□□□□□ -0.85
CLSTN3-210ENST00000540931 LINC00472Q9H8W2 130 aa9.72□□□□□ -0.85
CLSTN3-210ENST00000540931 NREPQ16612 68 aa9.71□□□□□ -0.86
CLSTN3-210ENST00000540931 Q96NJ1 140 aa9.7□□□□□ -0.86
CLSTN3-210ENST00000540931 IGKV4-1P06312 121 aa9.69□□□□□ -0.86
CLSTN3-210ENST00000540931 ETDBQ3ZM63 59 aa9.68□□□□□ -0.86
CLSTN3-210ENST00000540931 SIGMAR1Q99720 223 aa9.68□□□□□ -0.86
CLSTN3-210ENST00000540931 NDUFB1O75438 58 aa9.67□□□□□ -0.86
CLSTN3-210ENST00000540931 A0A1B0GV90 55 aa9.65□□□□□ -0.86
CLSTN3-210ENST00000540931 KRTAP9-2Q9BYQ4 174 aa9.64□□□□□ -0.87
CLSTN3-210ENST00000540931 MUC2Q02817 5179 aa9.63□□□□□ -0.87
CLSTN3-210ENST00000540931 XP32Q5T750 250 aa9.63□□□□□ -0.87
CLSTN3-210ENST00000540931 UBL5Q9BZL1 73 aa9.63□□□□□ -0.87
CLSTN3-210ENST00000540931 SEC61BP60468 96 aaKnown RBP9.62□□□□□ -0.87
CLSTN3-210ENST00000540931 C9orf92A6NGG3 77 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 407.6 ms