RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HIGD1BQ9P298 99 aa8.17□□□□□ -1.1
USP28-204ENST00000537642 C2orf91Q6ZV80 131 aa8.16□□□□□ -1.1
USP28-204ENST00000537642 CFC1BP0CG36 223 aa8.15□□□□□ -1.1
USP28-204ENST00000537642 CFC1P0CG37 223 aa8.15□□□□□ -1.1
USP28-204ENST00000537642 PYY3Q5JQD4 70 aa8.15□□□□□ -1.1
USP28-204ENST00000537642 XP32Q5T750 250 aa8.15□□□□□ -1.1
USP28-204ENST00000537642 Q5XG85 94 aa8.15□□□□□ -1.1
USP28-204ENST00000537642 BVES-AS1Q5T3Y7 98 aa8.14□□□□□ -1.11
USP28-204ENST00000537642 SEC61BP60468 96 aaKnown RBP8.13□□□□□ -1.11
USP28-204ENST00000537642 F8WEM9 126 aa8.12□□□□□ -1.11
USP28-204ENST00000537642 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.12□□□□□ -1.11
USP28-204ENST00000537642 KRTAP4-1Q9BYQ7 146 aa8.12□□□□□ -1.11
USP28-204ENST00000537642 A0A0B4J2C4 111 aa8.11□□□□□ -1.11
USP28-204ENST00000537642 TSTD3H0UI37 97 aa8.11□□□□□ -1.11
USP28-204ENST00000537642 C1orf195Q5TG92 126 aa8.11□□□□□ -1.11
USP28-204ENST00000537642 RAB37Q96AX2 223 aa8.11□□□□□ -1.11
USP28-204ENST00000537642 LCE2AQ5TA79 106 aaPredicted RBP8.1□□□□□ -1.11
USP28-204ENST00000537642 IGLV8-61A0A075B6I0 122 aa8.09□□□□□ -1.11
USP28-204ENST00000537642 C9orf92A6NGG3 77 aa8.09□□□□□ -1.11
USP28-204ENST00000537642 CEND1Q8N111 149 aa8.09□□□□□ -1.11
USP28-204ENST00000537642 OCIAD2Q56VL3 154 aa8.07□□□□□ -1.12
USP28-204ENST00000537642 Q6JHZ5 121 aa8.07□□□□□ -1.12
USP28-204ENST00000537642 IGFL1Q6UW32 110 aa8.07□□□□□ -1.12
USP28-204ENST00000537642 PPDPFLQ8WWR9 84 aa8.07□□□□□ -1.12
USP28-204ENST00000537642 FXYD2P54710 66 aa8.06□□□□□ -1.12
USP28-204ENST00000537642 CLEC2BQ92478 149 aa8.06□□□□□ -1.12
USP28-204ENST00000537642 FAM218AQ96MZ4 157 aa8.06□□□□□ -1.12
USP28-204ENST00000537642 H0YGX0 51 aa8.05□□□□□ -1.12
USP28-204ENST00000537642 TCL1BO95988 128 aa8.05□□□□□ -1.12
USP28-204ENST00000537642 TMEM238LA0A1B0GVL6 79 aa8.04□□□□□ -1.12
USP28-204ENST00000537642 A6NJY4 79 aa8.04□□□□□ -1.12
USP28-204ENST00000537642 SNHG12Q9BXW3 62 aa8.04□□□□□ -1.12
USP28-204ENST00000537642 PRO1854Q9UHT4 67 aa8.04□□□□□ -1.12
USP28-204ENST00000537642 TRBV7-7A0A0K0K1E9 115 aa8.03□□□□□ -1.12
USP28-204ENST00000537642 H3BUT2 72 aa8.02□□□□□ -1.13
USP28-204ENST00000537642 SNCGO76070 127 aa8□□□□□ -1.13
USP28-204ENST00000537642 PCOTHQ58A44 107 aa8□□□□□ -1.13
USP28-204ENST00000537642 HSD52Q0P140 79 aa7.99□□□□□ -1.13
USP28-204ENST00000537642 A0A1B0GX51 115 aa7.98□□□□□ -1.13
USP28-204ENST00000537642 TRIAP1O43715 76 aa7.98□□□□□ -1.13
USP28-204ENST00000537642 NDUFV3P56181 108 aaKnown RBP7.97□□□□□ -1.13
USP28-204ENST00000537642 K7ERJ3 54 aa7.95□□□□□ -1.14
USP28-204ENST00000537642 UQCR10Q9UDW1 63 aa7.94□□□□□ -1.14
USP28-204ENST00000537642 M0R143 59 aa7.93□□□□□ -1.14
USP28-204ENST00000537642 RPL37P61927 97 aaKnown RBP7.93□□□□□ -1.14
USP28-204ENST00000537642 Q6Q795 121 aa7.93□□□□□ -1.14
USP28-204ENST00000537642 A0A1B0GV90 55 aa7.92□□□□□ -1.14
USP28-204ENST00000537642 FABP2P12104 132 aa7.92□□□□□ -1.14
USP28-204ENST00000537642 H3BMG7 143 aa7.91□□□□□ -1.14
USP28-204ENST00000537642 LST1O00453 97 aa7.91□□□□□ -1.14
USP28-204ENST00000537642 GHRHP01286 108 aa7.91□□□□□ -1.14
USP28-204ENST00000537642 PSMB2P49721 201 aa7.91□□□□□ -1.14
USP28-204ENST00000537642 TEN1Q86WV5 123 aa7.91□□□□□ -1.14
USP28-204ENST00000537642 KRTAP19-2Q3LHN2 52 aa7.9□□□□□ -1.14
USP28-204ENST00000537642 KRTAP3-3Q9BYR6 98 aa7.9□□□□□ -1.14
USP28-204ENST00000537642 KRTAP3-2Q9BYR7 98 aa7.9□□□□□ -1.14
USP28-204ENST00000537642 LCE2CQ5TA81 110 aa7.89□□□□□ -1.15
USP28-204ENST00000537642 SS18L2Q9UHA2 77 aa7.88□□□□□ -1.15
USP28-204ENST00000537642 DNAL4O96015 105 aa7.87□□□□□ -1.15
USP28-204ENST00000537642 COX6CP09669 75 aa7.87□□□□□ -1.15
USP28-204ENST00000537642 ORMDL1Q9P0S3 153 aa7.87□□□□□ -1.15
USP28-204ENST00000537642 A0A087WSZ3 146 aa7.86□□□□□ -1.15
USP28-204ENST00000537642 A0A1W2PNM2 257 aa7.86□□□□□ -1.15
USP28-204ENST00000537642 OBSCN-AS1Q96MR7 158 aa7.86□□□□□ -1.15
USP28-204ENST00000537642 KRTAP9-2Q9BYQ4 174 aa7.85□□□□□ -1.15
USP28-204ENST00000537642 H3BQ85 93 aa7.84□□□□□ -1.15
USP28-204ENST00000537642 Q96NJ1 140 aa7.84□□□□□ -1.15
USP28-204ENST00000537642 A0A1B0GV72 72 aa7.82□□□□□ -1.16
USP28-204ENST00000537642 TMEM256-PLSCR3K7ERE1 68 aa7.82□□□□□ -1.16
USP28-204ENST00000537642 Q75L30 129 aa7.82□□□□□ -1.16
USP28-204ENST00000537642 COL5A1-AS1Q5SY13 56 aa7.81□□□□□ -1.16
USP28-204ENST00000537642 ANKRD29Q8N6D5 301 aa7.81□□□□□ -1.16
USP28-204ENST00000537642 TRACP01848 142 aa7.8□□□□□ -1.16
USP28-204ENST00000537642 SCGB1C2P0DMR2 95 aa7.79□□□□□ -1.16
USP28-204ENST00000537642 TRBV7-4A0A0J9YYF1 115 aa7.78□□□□□ -1.16
USP28-204ENST00000537642 MT1HP80294 61 aa7.78□□□□□ -1.16
USP28-204ENST00000537642 UBE2V1Q13404 147 aa7.78□□□□□ -1.16
USP28-204ENST00000537642 ATP11AUNQ6ZP68 121 aa7.76□□□□□ -1.17
USP28-204ENST00000537642 FLGP20930 4061 aaPredicted RBP7.75□□□□□ -1.17
USP28-204ENST00000537642 C20orf166-AS1Q96NR2 134 aa7.75□□□□□ -1.17
USP28-204ENST00000537642 SIGMAR1Q99720 223 aa7.75□□□□□ -1.17
USP28-204ENST00000537642 CCKP06307 115 aa7.74□□□□□ -1.17
USP28-204ENST00000537642 A8MUU9 505 aa7.73□□□□□ -1.17
USP28-204ENST00000537642 DSCR10P59022 87 aa7.73□□□□□ -1.17
USP28-204ENST00000537642 IGKV4-1P06312 121 aa7.72□□□□□ -1.17
USP28-204ENST00000537642 BAALC-AS2P0C853 105 aa7.71□□□□□ -1.18
USP28-204ENST00000537642 NAA38Q9BRA0 125 aaKnown RBP7.71□□□□□ -1.18
USP28-204ENST00000537642 LINC00472Q9H8W2 130 aa7.71□□□□□ -1.18
USP28-204ENST00000537642 RBM3P98179 157 aaKnown RBP7.7□□□□□ -1.18
USP28-204ENST00000537642 DEFB116Q30KQ4 102 aa7.69□□□□□ -1.18
USP28-204ENST00000537642 COX6B2Q6YFQ2 88 aa7.69□□□□□ -1.18
USP28-204ENST00000537642 DSCR8Q96T75 97 aa7.68□□□□□ -1.18
USP28-204ENST00000537642 VPS25Q9BRG1 176 aa7.68□□□□□ -1.18
USP28-204ENST00000537642 LINC00313P59037 77 aa7.67□□□□□ -1.18
USP28-204ENST00000537642 KRTAP16-1A8MUX0 517 aa7.66□□□□□ -1.18
USP28-204ENST00000537642 ATXN8Q156A1 80 aa7.66□□□□□ -1.18
USP28-204ENST00000537642 NOTCH2NLQ7Z3S9 236 aa7.66□□□□□ -1.18
USP28-204ENST00000537642 C9JAW5 83 aa7.63□□□□□ -1.19
USP28-204ENST00000537642 KRTAP10-6P60371 365 aaPredicted RBP7.63□□□□□ -1.19
USP28-204ENST00000537642 IGHV6-1A0A0B4J1U7 121 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms