RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 H7BZZ5 65 aa9.23□□□□□ -0.93
PCDHA9-202ENST00000532602 CDC42SE1Q9NRR8 79 aa9.2□□□□□ -0.94
PCDHA9-202ENST00000532602 VPS13AQ96RL7 3174 aa9.2□□□□□ -0.94
PCDHA9-202ENST00000532602 COL6A3P12111 3177 aa9.18□□□□□ -0.94
PCDHA9-202ENST00000532602 LAMA1P25391 3075 aa9.18□□□□□ -0.94
PCDHA9-202ENST00000532602 CENPEQ02224 2701 aa9.18□□□□□ -0.94
PCDHA9-202ENST00000532602 A0A0D9SG42 100 aa9.18□□□□□ -0.94
PCDHA9-202ENST00000532602 M0R2T5 61 aa9.18□□□□□ -0.94
PCDHA9-202ENST00000532602 TEP1Q99973 2627 aaKnown RBP9.16□□□□□ -0.94
PCDHA9-202ENST00000532602 KRTAP1-5Q9BYS1 174 aa9.14□□□□□ -0.95
PCDHA9-202ENST00000532602 Q8NDZ9 215 aa9.14□□□□□ -0.95
PCDHA9-202ENST00000532602 ZNF292O60281 2723 aa9.13□□□□□ -0.95
PCDHA9-202ENST00000532602 CAMK2N1Q7Z7J9 78 aa9.1□□□□□ -0.95
PCDHA9-202ENST00000532602 SPRR1AP35321 89 aa9.09□□□□□ -0.95
PCDHA9-202ENST00000532602 OCR1Q9BZK8 76 aa9.09□□□□□ -0.95
PCDHA9-202ENST00000532602 ZCCHC13Q8WW36 166 aaKnown RBP9.08□□□□□ -0.96
PCDHA9-202ENST00000532602 LCE6AA0A183 80 aa9.08□□□□□ -0.96
PCDHA9-202ENST00000532602 CSAG1Q6PB30 78 aa9.07□□□□□ -0.96
PCDHA9-202ENST00000532602 DSPP15924 2871 aaKnown RBP9.06□□□□□ -0.96
PCDHA9-202ENST00000532602 HRES1P13985 223 aa9.06□□□□□ -0.96
PCDHA9-202ENST00000532602 SPRR1BP22528 89 aa9.05□□□□□ -0.96
PCDHA9-202ENST00000532602 COL6A5A8TX70 2615 aa9.05□□□□□ -0.96
PCDHA9-202ENST00000532602 SEC61BP60468 96 aaKnown RBP9.05□□□□□ -0.96
PCDHA9-202ENST00000532602 KRTAP10-2P60368 255 aa9.05□□□□□ -0.96
PCDHA9-202ENST00000532602 TEX15Q9BXT5 2789 aa9.04□□□□□ -0.96
PCDHA9-202ENST00000532602 EYSQ5T1H1 3165 aa9.03□□□□□ -0.96
PCDHA9-202ENST00000532602 A0A1B0GU33 70 aa9.02□□□□□ -0.96
PCDHA9-202ENST00000532602 MMP24-AS1A0A0U1RRL7 71 aa9.01□□□□□ -0.97
PCDHA9-202ENST00000532602 KRTAP10-1P60331 282 aa9.01□□□□□ -0.97
PCDHA9-202ENST00000532602 Q5VSD8 79 aa9.01□□□□□ -0.97
PCDHA9-202ENST00000532602 FLG2Q5D862 2391 aaPredicted RBP9□□□□□ -0.97
PCDHA9-202ENST00000532602 FRYQ5TBA9 3013 aa8.99□□□□□ -0.97
PCDHA9-202ENST00000532602 NBEAL1Q6ZS30 2694 aa8.98□□□□□ -0.97
PCDHA9-202ENST00000532602 Q1T7F1 81 aa8.97□□□□□ -0.97
PCDHA9-202ENST00000532602 KTN1-AS1Q86SY8 53 aa8.97□□□□□ -0.97
PCDHA9-202ENST00000532602 LCA10Q71F78 164 aa8.96□□□□□ -0.97
PCDHA9-202ENST00000532602 S4R3F8 94 aa8.96□□□□□ -0.98
PCDHA9-202ENST00000532602 LUZP6Q538Z0 58 aa8.96□□□□□ -0.98
PCDHA9-202ENST00000532602 KRTAP26-1Q6PEX3 210 aa8.95□□□□□ -0.98
PCDHA9-202ENST00000532602 TNRC18O15417 2968 aaPredicted RBP8.94□□□□□ -0.98
PCDHA9-202ENST00000532602 CHD6Q8TD26 2715 aa8.94□□□□□ -0.98
PCDHA9-202ENST00000532602 LINC00483Q53H64 154 aa8.93□□□□□ -0.98
PCDHA9-202ENST00000532602 SPEGQ15772 3267 aa8.93□□□□□ -0.98
PCDHA9-202ENST00000532602 SPINK7P58062 85 aa8.92□□□□□ -0.98
PCDHA9-202ENST00000532602 UNC79Q9P2D8 2635 aa8.92□□□□□ -0.98
PCDHA9-202ENST00000532602 LINC00472Q9H8W2 130 aa8.92□□□□□ -0.98
PCDHA9-202ENST00000532602 Q8N9P0 234 aaPredicted RBP8.92□□□□□ -0.98
PCDHA9-202ENST00000532602 IGSF10Q6WRI0 2623 aa8.91□□□□□ -0.98
PCDHA9-202ENST00000532602 USP34Q70CQ2 3546 aa8.91□□□□□ -0.98
PCDHA9-202ENST00000532602 PANO1I0J062 215 aa8.9□□□□□ -0.99
PCDHA9-202ENST00000532602 DMAC1Q96GE9 116 aa8.9□□□□□ -0.99
PCDHA9-202ENST00000532602 Q5W150 140 aa8.89□□□□□ -0.99
PCDHA9-202ENST00000532602 FREM2Q5SZK8 3169 aa8.89□□□□□ -0.99
PCDHA9-202ENST00000532602 NOTCH1P46531 2555 aa8.89□□□□□ -0.99
PCDHA9-202ENST00000532602 BOD1L1Q8NFC6 3051 aa8.89□□□□□ -0.99
PCDHA9-202ENST00000532602 BAHCC1Q9P281 2608 aa8.87□□□□□ -0.99
PCDHA9-202ENST00000532602 FP248Q71RG6 208 aaPredicted RBP8.87□□□□□ -0.99
PCDHA9-202ENST00000532602 R4GN34 69 aa8.86□□□□□ -0.99
PCDHA9-202ENST00000532602 LINC01558Q9Y6Z2 57 aa8.83□□□□□ -1
PCDHA9-202ENST00000532602 Q75L30 129 aa8.83□□□□□ -1
PCDHA9-202ENST00000532602 MYO15AQ9UKN7 3530 aa8.83□□□□□ -1
PCDHA9-202ENST00000532602 OXTP01178 125 aa8.82□□□□□ -1
PCDHA9-202ENST00000532602 LRBAP50851 2863 aa8.81□□□□□ -1
PCDHA9-202ENST00000532602 FRYLO94915 3013 aa8.81□□□□□ -1
PCDHA9-202ENST00000532602 Q6ZR54 194 aa8.81□□□□□ -1
PCDHA9-202ENST00000532602 MAP1AP78559 2803 aaPredicted RBP8.8□□□□□ -1
PCDHA9-202ENST00000532602 CFAP47Q6ZTR5 3102 aa8.78□□□□□ -1
PCDHA9-202ENST00000532602 REV3LO60673 3130 aa8.78□□□□□ -1
PCDHA9-202ENST00000532602 DMXL2Q8TDJ6 3036 aa8.77□□□□□ -1
PCDHA9-202ENST00000532602 ATMQ13315 3056 aa8.76□□□□□ -1.01
PCDHA9-202ENST00000532602 KALRNO60229 2985 aa8.75□□□□□ -1.01
PCDHA9-202ENST00000532602 GCN1Q92616 2671 aaKnown RBP8.74□□□□□ -1.01
PCDHA9-202ENST00000532602 STAB2Q8WWQ8 2551 aa8.7□□□□□ -1.02
PCDHA9-202ENST00000532602 DMBT1Q9UGM3 2413 aaPredicted RBP8.7□□□□□ -1.02
PCDHA9-202ENST00000532602 COL12A1Q99715 3063 aa8.69□□□□□ -1.02
PCDHA9-202ENST00000532602 A0A087X002 238 aa8.68□□□□□ -1.02
PCDHA9-202ENST00000532602 ADGRG4Q8IZF6 3080 aa8.67□□□□□ -1.02
PCDHA9-202ENST00000532602 UBR5O95071 2799 aaPredicted RBP8.67□□□□□ -1.02
PCDHA9-202ENST00000532602 NBEAL2Q6ZNJ1 2754 aa8.66□□□□□ -1.02
PCDHA9-202ENST00000532602 KRTAP4-16G5E9R7 235 aaPredicted RBP8.66□□□□□ -1.02
PCDHA9-202ENST00000532602 KRTAP11-1Q8IUC1 163 aa8.66□□□□□ -1.02
PCDHA9-202ENST00000532602 DMXL1Q9Y485 3027 aa8.65□□□□□ -1.02
PCDHA9-202ENST00000532602 NSD1Q96L73 2696 aaPredicted RBP8.65□□□□□ -1.03
PCDHA9-202ENST00000532602 M0QZ58 72 aa8.64□□□□□ -1.03
PCDHA9-202ENST00000532602 RPL37P61927 97 aaKnown RBP8.64□□□□□ -1.03
PCDHA9-202ENST00000532602 ITPR2Q14571 2701 aa8.63□□□□□ -1.03
PCDHA9-202ENST00000532602 CYSTM1Q9H1C7 97 aa8.62□□□□□ -1.03
PCDHA9-202ENST00000532602 PLAC4Q8WY50 150 aa8.6□□□□□ -1.03
PCDHA9-202ENST00000532602 RPS29P62273 56 aaKnown RBP8.6□□□□□ -1.03
PCDHA9-202ENST00000532602 Q6ZRN7 208 aaPredicted RBP8.59□□□□□ -1.03
PCDHA9-202ENST00000532602 UTP20O75691 2785 aaKnown RBP8.58□□□□□ -1.04
PCDHA9-202ENST00000532602 TACC2O95359 2948 aa8.58□□□□□ -1.04
PCDHA9-202ENST00000532602 KRTAP21-3Q3LHN1 58 aa8.57□□□□□ -1.04
PCDHA9-202ENST00000532602 CRYBG3Q68DQ2 2970 aa8.57□□□□□ -1.04
PCDHA9-202ENST00000532602 Q5VV11 94 aa8.55□□□□□ -1.04
PCDHA9-202ENST00000532602 H1FX-AS1Q4G0G2 97 aa8.54□□□□□ -1.04
PCDHA9-202ENST00000532602 ASB16-AS1Q495Z4 193 aa8.54□□□□□ -1.04
PCDHA9-202ENST00000532602 LOC400499M0QZD8 3231 aa8.52□□□□□ -1.05
PCDHA9-202ENST00000532602 ASPMQ8IZT6 3477 aa8.52□□□□□ -1.05
PCDHA9-202ENST00000532602 KRTAP7-1Q8IUC3 87 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms