RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 WWC2-AS2Q96NR7 200 aa6.61□□□□□ -1.35
PDLIM3-209ENST00000514142 H3BS24 57 aa6.6□□□□□ -1.35
PDLIM3-209ENST00000514142 LINC01554Q52M75 96 aa6.6□□□□□ -1.35
PDLIM3-209ENST00000514142 LINC00304Q8N9R0 145 aa6.6□□□□□ -1.35
PDLIM3-209ENST00000514142 PSORS1C2Q9UIG4 136 aa6.59□□□□□ -1.35
PDLIM3-209ENST00000514142 OXTP01178 125 aa6.59□□□□□ -1.36
PDLIM3-209ENST00000514142 DNAH14Q0VDD8 3507 aa6.58□□□□□ -1.36
PDLIM3-209ENST00000514142 KRTAP10-3P60369 221 aa6.57□□□□□ -1.36
PDLIM3-209ENST00000514142 A0A087WTM6 91 aa6.56□□□□□ -1.36
PDLIM3-209ENST00000514142 IGLV7-43P04211 117 aa6.56□□□□□ -1.36
PDLIM3-209ENST00000514142 TEX15Q9BXT5 2789 aa6.56□□□□□ -1.36
PDLIM3-209ENST00000514142 Q5VV11 94 aa6.56□□□□□ -1.36
PDLIM3-209ENST00000514142 CNBPP62633 177 aaKnown RBP6.55□□□□□ -1.36
PDLIM3-209ENST00000514142 LINC01558Q9Y6Z2 57 aa6.55□□□□□ -1.36
PDLIM3-209ENST00000514142 IGLV5-37A0A075B6J1 123 aa6.55□□□□□ -1.36
PDLIM3-209ENST00000514142 HRES1P13985 223 aa6.55□□□□□ -1.36
PDLIM3-209ENST00000514142 K7EIL1 84 aa6.54□□□□□ -1.36
PDLIM3-209ENST00000514142 NBEAL1Q6ZS30 2694 aa6.54□□□□□ -1.36
PDLIM3-209ENST00000514142 CHD6Q8TD26 2715 aa6.54□□□□□ -1.36
PDLIM3-209ENST00000514142 Q8NDZ9 215 aa6.54□□□□□ -1.36
PDLIM3-209ENST00000514142 COL6A5A8TX70 2615 aa6.54□□□□□ -1.36
PDLIM3-209ENST00000514142 NOTCH1P46531 2555 aa6.51□□□□□ -1.37
PDLIM3-209ENST00000514142 A0A1B0GU33 70 aa6.51□□□□□ -1.37
PDLIM3-209ENST00000514142 COL6A3P12111 3177 aa6.51□□□□□ -1.37
PDLIM3-209ENST00000514142 SPINK7P58062 85 aa6.51□□□□□ -1.37
PDLIM3-209ENST00000514142 BAHCC1Q9P281 2608 aa6.5□□□□□ -1.37
PDLIM3-209ENST00000514142 LUZP6Q538Z0 58 aa6.5□□□□□ -1.37
PDLIM3-209ENST00000514142 FRYQ5TBA9 3013 aa6.5□□□□□ -1.37
PDLIM3-209ENST00000514142 SMR3BP02814 79 aaPredicted RBP6.5□□□□□ -1.37
PDLIM3-209ENST00000514142 MMP24-AS1A0A0U1RRL7 71 aa6.49□□□□□ -1.37
PDLIM3-209ENST00000514142 FLG2Q5D862 2391 aaPredicted RBP6.49□□□□□ -1.37
PDLIM3-209ENST00000514142 CSAG1Q6PB30 78 aa6.49□□□□□ -1.37
PDLIM3-209ENST00000514142 COX6B2Q6YFQ2 88 aa6.48□□□□□ -1.37
PDLIM3-209ENST00000514142 SPEGQ15772 3267 aa6.47□□□□□ -1.37
PDLIM3-209ENST00000514142 J3QL48 77 aa6.47□□□□□ -1.37
PDLIM3-209ENST00000514142 EYSQ5T1H1 3165 aa6.46□□□□□ -1.37
PDLIM3-209ENST00000514142 FREM2Q5SZK8 3169 aa6.46□□□□□ -1.38
PDLIM3-209ENST00000514142 BOD1L1Q8NFC6 3051 aa6.46□□□□□ -1.38
PDLIM3-209ENST00000514142 UNC79Q9P2D8 2635 aa6.46□□□□□ -1.38
PDLIM3-209ENST00000514142 FRYLO94915 3013 aa6.44□□□□□ -1.38
PDLIM3-209ENST00000514142 NBEAQ8NFP9 2946 aa6.44□□□□□ -1.38
PDLIM3-209ENST00000514142 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.4□□□□□ -1.38
PDLIM3-209ENST00000514142 SPRR1AP35321 89 aa6.4□□□□□ -1.39
PDLIM3-209ENST00000514142 LINC00472Q9H8W2 130 aa6.39□□□□□ -1.39
PDLIM3-209ENST00000514142 ATMQ13315 3056 aa6.37□□□□□ -1.39
PDLIM3-209ENST00000514142 ADGRG4Q8IZF6 3080 aa6.37□□□□□ -1.39
PDLIM3-209ENST00000514142 KRTAP1-3Q8IUG1 177 aa6.37□□□□□ -1.39
PDLIM3-209ENST00000514142 Q5W150 140 aa6.37□□□□□ -1.39
PDLIM3-209ENST00000514142 IGSF10Q6WRI0 2623 aa6.36□□□□□ -1.39
PDLIM3-209ENST00000514142 UBR5O95071 2799 aaPredicted RBP6.35□□□□□ -1.39
PDLIM3-209ENST00000514142 KRTAP1-1Q07627 177 aa6.35□□□□□ -1.39
PDLIM3-209ENST00000514142 DMXL2Q8TDJ6 3036 aa6.35□□□□□ -1.39
PDLIM3-209ENST00000514142 REV3LO60673 3130 aa6.34□□□□□ -1.39
PDLIM3-209ENST00000514142 DMAC1Q96GE9 116 aa6.34□□□□□ -1.39
PDLIM3-209ENST00000514142 DMBT1Q9UGM3 2413 aaPredicted RBP6.34□□□□□ -1.4
PDLIM3-209ENST00000514142 CAMK2N1Q7Z7J9 78 aa6.33□□□□□ -1.4
PDLIM3-209ENST00000514142 FLNCQ14315 2725 aa6.33□□□□□ -1.4
PDLIM3-209ENST00000514142 ZCCHC13Q8WW36 166 aaKnown RBP6.32□□□□□ -1.4
PDLIM3-209ENST00000514142 STAB2Q8WWQ8 2551 aa6.32□□□□□ -1.4
PDLIM3-209ENST00000514142 COL12A1Q99715 3063 aa6.32□□□□□ -1.4
PDLIM3-209ENST00000514142 TNP2Q05952 138 aa6.31□□□□□ -1.4
PDLIM3-209ENST00000514142 NSD1Q96L73 2696 aaPredicted RBP6.31□□□□□ -1.4
PDLIM3-209ENST00000514142 GCN1Q92616 2671 aaKnown RBP6.3□□□□□ -1.4
PDLIM3-209ENST00000514142 SPRR1BP22528 89 aa6.3□□□□□ -1.4
PDLIM3-209ENST00000514142 KALRNO60229 2985 aa6.3□□□□□ -1.4
PDLIM3-209ENST00000514142 ZZEF1O43149 2961 aa6.29□□□□□ -1.4
PDLIM3-209ENST00000514142 TACC2O95359 2948 aa6.28□□□□□ -1.4
PDLIM3-209ENST00000514142 CFAP47Q6ZTR5 3102 aa6.28□□□□□ -1.4
PDLIM3-209ENST00000514142 A0A0A0MQY5 61 aa6.28□□□□□ -1.4
PDLIM3-209ENST00000514142 KRTAP26-1Q6PEX3 210 aa6.27□□□□□ -1.41
PDLIM3-209ENST00000514142 USP34Q70CQ2 3546 aa6.27□□□□□ -1.41
PDLIM3-209ENST00000514142 SPTBN5Q9NRC6 3674 aaKnown RBP6.27□□□□□ -1.41
PDLIM3-209ENST00000514142 LINC00483Q53H64 154 aa6.26□□□□□ -1.41
PDLIM3-209ENST00000514142 Q6ZSA8 131 aa6.26□□□□□ -1.41
PDLIM3-209ENST00000514142 TNRC18O15417 2968 aaPredicted RBP6.25□□□□□ -1.41
PDLIM3-209ENST00000514142 DMXL1Q9Y485 3027 aa6.23□□□□□ -1.41
PDLIM3-209ENST00000514142 ROMO1P60602 79 aa6.23□□□□□ -1.41
PDLIM3-209ENST00000514142 PLAC8Q9NZF1 115 aa6.23□□□□□ -1.41
PDLIM3-209ENST00000514142 MYO15AQ9UKN7 3530 aa6.23□□□□□ -1.41
PDLIM3-209ENST00000514142 RPL37P61927 97 aaKnown RBP6.22□□□□□ -1.41
PDLIM3-209ENST00000514142 LRBAP50851 2863 aa6.22□□□□□ -1.41
PDLIM3-209ENST00000514142 KRTAP29-1A8MX34 341 aaPredicted RBP6.22□□□□□ -1.41
PDLIM3-209ENST00000514142 S4R3F8 94 aa6.22□□□□□ -1.41
PDLIM3-209ENST00000514142 LOC400499M0QZD8 3231 aa6.2□□□□□ -1.42
PDLIM3-209ENST00000514142 Q6ZR54 194 aa6.2□□□□□ -1.42
PDLIM3-209ENST00000514142 NBEAL2Q6ZNJ1 2754 aa6.2□□□□□ -1.42
PDLIM3-209ENST00000514142 ITPR1Q14643 2758 aa6.19□□□□□ -1.42
PDLIM3-209ENST00000514142 H1FX-AS1Q4G0G2 97 aa6.18□□□□□ -1.42
PDLIM3-209ENST00000514142 KRTAP1-5Q9BYS1 174 aa6.18□□□□□ -1.42
PDLIM3-209ENST00000514142 A6NN06 94 aa6.17□□□□□ -1.42
PDLIM3-209ENST00000514142 SPATA8Q6RVD6 105 aa6.17□□□□□ -1.42
PDLIM3-209ENST00000514142 ASB16-AS1Q495Z4 193 aa6.17□□□□□ -1.42
PDLIM3-209ENST00000514142 KRTAP4-16G5E9R7 235 aaPredicted RBP6.16□□□□□ -1.42
PDLIM3-209ENST00000514142 R4GN34 69 aa6.15□□□□□ -1.42
PDLIM3-209ENST00000514142 A8MU10 97 aa6.15□□□□□ -1.42
PDLIM3-209ENST00000514142 ADM2Q7Z4H4 148 aa6.13□□□□□ -1.43
PDLIM3-209ENST00000514142 A0A087X002 238 aa6.11□□□□□ -1.43
PDLIM3-209ENST00000514142 NOTCH2NLQ7Z3S9 236 aa6.11□□□□□ -1.43
PDLIM3-209ENST00000514142 ITPR2Q14571 2701 aa6.11□□□□□ -1.43
PDLIM3-209ENST00000514142 KRTAP16-1A8MUX0 517 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms