RNA–Protein interactions for RNA: ENST00000513016.5

VCAN-209, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 8,483 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-209ENST00000513016 HELZ2Q9BYK8 2649 aaKnown RBP2.52□□□□□ -2.01
VCAN-209ENST00000513016 OCR1Q9BZK8 76 aa2.52□□□□□ -2.01
VCAN-209ENST00000513016 H7BZZ5 65 aa2.51□□□□□ -2.01
VCAN-209ENST00000513016 Q8N9P0 234 aaPredicted RBP2.5□□□□□ -2.01
VCAN-209ENST00000513016 ASB16-AS1Q495Z4 193 aa2.5□□□□□ -2.01
VCAN-209ENST00000513016 M0QZ58 72 aa2.5□□□□□ -2.01
VCAN-209ENST00000513016 H1FX-AS1Q4G0G2 97 aa2.49□□□□□ -2.01
VCAN-209ENST00000513016 Q6ZRN7 208 aaPredicted RBP2.49□□□□□ -2.01
VCAN-209ENST00000513016 CENPFP49454 3210 aa2.48□□□□□ -2.01
VCAN-209ENST00000513016 LINC01558Q9Y6Z2 57 aa2.48□□□□□ -2.01
VCAN-209ENST00000513016 Q75L30 129 aa2.47□□□□□ -2.01
VCAN-209ENST00000513016 A0A0C4DFX4 3053 aa2.47□□□□□ -2.01
VCAN-209ENST00000513016 Q8NDZ9 215 aa2.47□□□□□ -2.01
VCAN-209ENST00000513016 A0A087X002 238 aa2.46□□□□□ -2.01
VCAN-209ENST00000513016 PANO1I0J062 215 aa2.46□□□□□ -2.01
VCAN-209ENST00000513016 RPL37P61927 97 aaKnown RBP2.46□□□□□ -2.02
VCAN-209ENST00000513016 Q5XG85 94 aa2.46□□□□□ -2.02
VCAN-209ENST00000513016 ITPR3Q14573 2671 aa2.46□□□□□ -2.02
VCAN-209ENST00000513016 LAMA2P24043 3122 aaKnown RBP2.46□□□□□ -2.02
VCAN-209ENST00000513016 ADM2Q7Z4H4 148 aa2.45□□□□□ -2.02
VCAN-209ENST00000513016 KRTAP4-16G5E9R7 235 aaPredicted RBP2.45□□□□□ -2.02
VCAN-209ENST00000513016 FLNAP21333 2647 aaKnown RBP2.45□□□□□ -2.02
VCAN-209ENST00000513016 USP24Q9UPU5 2620 aa2.44□□□□□ -2.02
VCAN-209ENST00000513016 C20orf166-AS1Q96NR2 134 aa2.44□□□□□ -2.02
VCAN-209ENST00000513016 KRTAP16-1A8MUX0 517 aa2.43□□□□□ -2.02
VCAN-209ENST00000513016 MKI67P46013 3256 aaKnown RBP2.42□□□□□ -2.02
VCAN-209ENST00000513016 PRAC1Q96KF2 57 aa2.42□□□□□ -2.02
VCAN-209ENST00000513016 STAB1Q9NY15 2570 aa2.42□□□□□ -2.02
VCAN-209ENST00000513016 MAST4O15021 2626 aa2.42□□□□□ -2.02
VCAN-209ENST00000513016 ATRQ13535 2644 aa2.41□□□□□ -2.02
VCAN-209ENST00000513016 ROMO1P60602 79 aa2.41□□□□□ -2.02
VCAN-209ENST00000513016 BAHCC1Q9P281 2608 aa2.41□□□□□ -2.02
VCAN-209ENST00000513016 A8MUU9 505 aa2.4□□□□□ -2.02
VCAN-209ENST00000513016 WDR87Q6ZQQ6 2873 aa2.4□□□□□ -2.02
VCAN-209ENST00000513016 KRTAP13-2Q52LG2 175 aa2.4□□□□□ -2.03
VCAN-209ENST00000513016 BRCA2P51587 3418 aa2.39□□□□□ -2.03
VCAN-209ENST00000513016 CFAP46Q8IYW2 2715 aa2.39□□□□□ -2.03
VCAN-209ENST00000513016 KRTAP13-1Q8IUC0 172 aa2.39□□□□□ -2.03
VCAN-209ENST00000513016 LAMA3Q16787 3333 aa2.39□□□□□ -2.03
VCAN-209ENST00000513016 KRTAP29-1A8MX34 341 aaPredicted RBP2.38□□□□□ -2.03
VCAN-209ENST00000513016 KRTAP17-1Q9BYP8 105 aa2.37□□□□□ -2.03
VCAN-209ENST00000513016 NOTCH2NLQ7Z3S9 236 aa2.36□□□□□ -2.03
VCAN-209ENST00000513016 TPRXLQ17RH7 258 aa2.36□□□□□ -2.03
VCAN-209ENST00000513016 KRTAP11-1Q8IUC1 163 aa2.36□□□□□ -2.03
VCAN-209ENST00000513016 TNP1P09430 55 aa2.35□□□□□ -2.03
VCAN-209ENST00000513016 Q5VV11 94 aa2.34□□□□□ -2.03
VCAN-209ENST00000513016 SETXQ7Z333 2677 aaKnown RBP2.34□□□□□ -2.03
VCAN-209ENST00000513016 KRTAP7-1Q8IUC3 87 aa2.33□□□□□ -2.04
VCAN-209ENST00000513016 VCANP13611 3396 aa2.33□□□□□ -2.04
VCAN-209ENST00000513016 PRUNE2Q8WUY3 3088 aa2.33□□□□□ -2.04
VCAN-209ENST00000513016 PRO2289Q9P1D8 64 aa2.32□□□□□ -2.04
VCAN-209ENST00000513016 SPATA8Q6RVD6 105 aa2.32□□□□□ -2.04
VCAN-209ENST00000513016 XP32Q5T750 250 aa2.32□□□□□ -2.04
VCAN-209ENST00000513016 DNAH12Q6ZR08 3092 aa2.32□□□□□ -2.04
VCAN-209ENST00000513016 TEP1Q99973 2627 aaKnown RBP2.32□□□□□ -2.04
VCAN-209ENST00000513016 RANBP2P49792 3224 aaKnown RBP2.32□□□□□ -2.04
VCAN-209ENST00000513016 EYSQ5T1H1 3165 aa2.31□□□□□ -2.04
VCAN-209ENST00000513016 UNC79Q9P2D8 2635 aa2.31□□□□□ -2.04
VCAN-209ENST00000513016 COL6A5A8TX70 2615 aa2.31□□□□□ -2.04
VCAN-209ENST00000513016 BPTFQ12830 3046 aa2.31□□□□□ -2.04
VCAN-209ENST00000513016 FLG2Q5D862 2391 aaPredicted RBP2.3□□□□□ -2.04
VCAN-209ENST00000513016 KRTAP10-10P60014 251 aa2.3□□□□□ -2.04
VCAN-209ENST00000513016 KRTAP1-4P0C5Y4 121 aa2.29□□□□□ -2.04
VCAN-209ENST00000513016 KRTAP10-8P60410 259 aa2.29□□□□□ -2.04
VCAN-209ENST00000513016 MUC3AQ02505 3323 aa2.29□□□□□ -2.04
VCAN-209ENST00000513016 TEX15Q9BXT5 2789 aa2.28□□□□□ -2.04
VCAN-209ENST00000513016 KMT2BQ9UMN6 2715 aaPredicted RBP2.28□□□□□ -2.04
VCAN-209ENST00000513016 SZT2Q5T011 3432 aa2.28□□□□□ -2.04
VCAN-209ENST00000513016 COL6A3P12111 3177 aa2.27□□□□□ -2.05
VCAN-209ENST00000513016 A0A1B0GVY2 172 aa2.27□□□□□ -2.05
VCAN-209ENST00000513016 NDUFAF8A1L188 74 aa2.27□□□□□ -2.05
VCAN-209ENST00000513016 PP632Q6XCG6 107 aa2.26□□□□□ -2.05
VCAN-209ENST00000513016 KRTAP25-1Q3LHN0 102 aa2.26□□□□□ -2.05
VCAN-209ENST00000513016 KRTAP13-3Q3SY46 172 aa2.26□□□□□ -2.05
VCAN-209ENST00000513016 CYSTM1Q9H1C7 97 aa2.26□□□□□ -2.05
VCAN-209ENST00000513016 HTTP42858 3142 aa2.26□□□□□ -2.05
VCAN-209ENST00000513016 DMBT1Q9UGM3 2413 aaPredicted RBP2.26□□□□□ -2.05
VCAN-209ENST00000513016 XIRP2A4UGR9 3374 aa2.25□□□□□ -2.05
VCAN-209ENST00000513016 UNC80Q8N2C7 3258 aa2.25□□□□□ -2.05
VCAN-209ENST00000513016 ZNF292O60281 2723 aa2.24□□□□□ -2.05
VCAN-209ENST00000513016 NSD1Q96L73 2696 aaPredicted RBP2.24□□□□□ -2.05
VCAN-209ENST00000513016 CDH23Q9H251 3354 aa2.24□□□□□ -2.05
VCAN-209ENST00000513016 TRIOO75962 3097 aa2.24□□□□□ -2.05
VCAN-209ENST00000513016 NBEAL1Q6ZS30 2694 aa2.24□□□□□ -2.05
VCAN-209ENST00000513016 A8MU10 97 aa2.23□□□□□ -2.05
VCAN-209ENST00000513016 IGSF10Q6WRI0 2623 aa2.23□□□□□ -2.05
VCAN-209ENST00000513016 MAP1AP78559 2803 aaPredicted RBP2.23□□□□□ -2.05
VCAN-209ENST00000513016 PCLOQ9Y6V0 5065 aa2.22□□□□□ -2.05
VCAN-209ENST00000513016 VPS13AQ96RL7 3174 aa2.22□□□□□ -2.05
VCAN-209ENST00000513016 GCN1Q92616 2671 aaKnown RBP2.21□□□□□ -2.06
VCAN-209ENST00000513016 A6NN06 94 aa2.21□□□□□ -2.06
VCAN-209ENST00000513016 ITPR2Q14571 2701 aa2.2□□□□□ -2.06
VCAN-209ENST00000513016 WDFY4Q6ZS81 3184 aa2.2□□□□□ -2.06
VCAN-209ENST00000513016 NOTCH1P46531 2555 aa2.19□□□□□ -2.06
VCAN-209ENST00000513016 CHD6Q8TD26 2715 aa2.19□□□□□ -2.06
VCAN-209ENST00000513016 C10orf95Q9H7T3 257 aa2.19□□□□□ -2.06
VCAN-209ENST00000513016 REV3LO60673 3130 aa2.18□□□□□ -2.06
VCAN-209ENST00000513016 CHD7Q9P2D1 2997 aa2.18□□□□□ -2.06
VCAN-209ENST00000513016 CHD9Q3L8U1 2897 aa2.18□□□□□ -2.06
VCAN-209ENST00000513016 STAB2Q8WWQ8 2551 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms