RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 BAHCC1Q9P281 2608 aa7.57□□□□□ -1.2
LIMCH1-213ENST00000511496 DEFB123Q8N688 67 aa7.57□□□□□ -1.2
LIMCH1-213ENST00000511496 C15orf56Q8N910 161 aa7.56□□□□□ -1.2
LIMCH1-213ENST00000511496 DEFB135Q30KP9 77 aa7.55□□□□□ -1.2
LIMCH1-213ENST00000511496 A0A096LNI7 61 aa7.54□□□□□ -1.2
LIMCH1-213ENST00000511496 A8MWP4 228 aa7.54□□□□□ -1.2
LIMCH1-213ENST00000511496 KRTAP4-16G5E9R7 235 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-213ENST00000511496 Q6ZR54 194 aa7.54□□□□□ -1.2
LIMCH1-213ENST00000511496 RTL8CO15255 209 aa7.53□□□□□ -1.2
LIMCH1-213ENST00000511496 FAM208BQ5VWN6 2430 aa7.52□□□□□ -1.21
LIMCH1-213ENST00000511496 ABCA12Q86UK0 2595 aa7.52□□□□□ -1.21
LIMCH1-213ENST00000511496 C1orf134Q5TEV5 83 aa7.5□□□□□ -1.21
LIMCH1-213ENST00000511496 SRRM2Q9UQ35 2752 aaKnown RBP7.5□□□□□ -1.21
LIMCH1-213ENST00000511496 DOPEY1Q5JWR5 2465 aa7.5□□□□□ -1.21
LIMCH1-213ENST00000511496 IGKV2-24A0A0C4DH68 120 aa7.5□□□□□ -1.21
LIMCH1-213ENST00000511496 FLNCQ14315 2725 aa7.49□□□□□ -1.21
LIMCH1-213ENST00000511496 PRLHP81277 87 aa7.49□□□□□ -1.21
LIMCH1-213ENST00000511496 MMP24-AS1A0A0U1RRL7 71 aa7.49□□□□□ -1.21
LIMCH1-213ENST00000511496 SPRR1AP35321 89 aa7.48□□□□□ -1.21
LIMCH1-213ENST00000511496 KRTAP26-1Q6PEX3 210 aa7.47□□□□□ -1.21
LIMCH1-213ENST00000511496 A0A1B0GU69 56 aa7.46□□□□□ -1.22
LIMCH1-213ENST00000511496 LINC00472Q9H8W2 130 aa7.45□□□□□ -1.22
LIMCH1-213ENST00000511496 REG3GQ6UW15 175 aa7.45□□□□□ -1.22
LIMCH1-213ENST00000511496 MYO18BQ8IUG5 2567 aa7.44□□□□□ -1.22
LIMCH1-213ENST00000511496 MIR22HGQ0VDD5 57 aa7.44□□□□□ -1.22
LIMCH1-213ENST00000511496 ASB16-AS1Q495Z4 193 aa7.44□□□□□ -1.22
LIMCH1-213ENST00000511496 KRTAP7-1Q8IUC3 87 aa7.42□□□□□ -1.22
LIMCH1-213ENST00000511496 TP53AIP1Q9HCN2 124 aa7.42□□□□□ -1.22
LIMCH1-213ENST00000511496 PKD1L1Q8TDX9 2849 aa7.41□□□□□ -1.22
LIMCH1-213ENST00000511496 SPART-AS1P0CW21 52 aa7.41□□□□□ -1.22
LIMCH1-213ENST00000511496 SPATA8Q6RVD6 105 aa7.41□□□□□ -1.22
LIMCH1-213ENST00000511496 CACNA1AO00555 2505 aa7.4□□□□□ -1.23
LIMCH1-213ENST00000511496 DEFB131BA0A096LNP1 70 aa7.4□□□□□ -1.23
LIMCH1-213ENST00000511496 K7EIL1 84 aa7.39□□□□□ -1.23
LIMCH1-213ENST00000511496 IGHV6-1A0A0B4J1U7 121 aa7.38□□□□□ -1.23
LIMCH1-213ENST00000511496 CSMD3Q7Z407 3707 aa7.38□□□□□ -1.23
LIMCH1-213ENST00000511496 TENM2Q9NT68 2774 aa7.38□□□□□ -1.23
LIMCH1-213ENST00000511496 UQCR11O14957 56 aa7.37□□□□□ -1.23
LIMCH1-213ENST00000511496 ACANP16112 2415 aa7.37□□□□□ -1.23
LIMCH1-213ENST00000511496 IGLV8-61A0A075B6I0 122 aa7.37□□□□□ -1.23
LIMCH1-213ENST00000511496 ACYP2P14621 99 aa7.36□□□□□ -1.23
LIMCH1-213ENST00000511496 PLA2G2DQ9UNK4 145 aa7.36□□□□□ -1.23
LIMCH1-213ENST00000511496 HELZ2Q9BYK8 2649 aaKnown RBP7.35□□□□□ -1.23
LIMCH1-213ENST00000511496 VWFP04275 2813 aa7.35□□□□□ -1.23
LIMCH1-213ENST00000511496 C8orf17Q9NRJ1 99 aa7.34□□□□□ -1.23
LIMCH1-213ENST00000511496 PDZD2O15018 2839 aa7.34□□□□□ -1.23
LIMCH1-213ENST00000511496 FBN1P35555 2871 aaKnown RBP7.33□□□□□ -1.24
LIMCH1-213ENST00000511496 ROMO1P60602 79 aa7.33□□□□□ -1.24
LIMCH1-213ENST00000511496 HIVEP1P15822 2718 aa7.32□□□□□ -1.24
LIMCH1-213ENST00000511496 ITPR3Q14573 2671 aa7.32□□□□□ -1.24
LIMCH1-213ENST00000511496 FLG2Q5D862 2391 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-213ENST00000511496 CASC10Q5T4H9 136 aa7.31□□□□□ -1.24
LIMCH1-213ENST00000511496 TLX1NBP0CAT3 122 aa7.31□□□□□ -1.24
LIMCH1-213ENST00000511496 A0A087X002 238 aa7.3□□□□□ -1.24
LIMCH1-213ENST00000511496 ZNF861PO60384 105 aa7.29□□□□□ -1.24
LIMCH1-213ENST00000511496 MRPL34Q9BQ48 92 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-213ENST00000511496 CDK2AP2O75956 126 aa7.28□□□□□ -1.24
LIMCH1-213ENST00000511496 ZNF469Q96JG9 3925 aaPredicted RBP7.28□□□□□ -1.24
LIMCH1-213ENST00000511496 TRRAPQ9Y4A5 3859 aa7.27□□□□□ -1.25
LIMCH1-213ENST00000511496 FLNAP21333 2647 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-213ENST00000511496 TEP1Q99973 2627 aaKnown RBP7.27□□□□□ -1.25
LIMCH1-213ENST00000511496 NOTCH2NLQ7Z3S9 236 aa7.26□□□□□ -1.25
LIMCH1-213ENST00000511496 Q5W150 140 aa7.26□□□□□ -1.25
LIMCH1-213ENST00000511496 IGLV9-49A0A0B4J1Y8 123 aa7.25□□□□□ -1.25
LIMCH1-213ENST00000511496 COL7A1Q02388 2944 aa7.23□□□□□ -1.25
LIMCH1-213ENST00000511496 A0A1B0GVX0 72 aa7.23□□□□□ -1.25
LIMCH1-213ENST00000511496 NOTCH2Q04721 2471 aa7.23□□□□□ -1.25
LIMCH1-213ENST00000511496 HECTD1Q9ULT8 2610 aa7.22□□□□□ -1.25
LIMCH1-213ENST00000511496 Q96NJ1 140 aa7.22□□□□□ -1.25
LIMCH1-213ENST00000511496 LINC01556Q5JQF7 62 aa7.22□□□□□ -1.25
LIMCH1-213ENST00000511496 KRTAP25-1Q3LHN0 102 aa7.21□□□□□ -1.26
LIMCH1-213ENST00000511496 CRIPTQ9P021 101 aa7.21□□□□□ -1.26
LIMCH1-213ENST00000511496 KRTAP10-9P60411 292 aa7.2□□□□□ -1.26
LIMCH1-213ENST00000511496 DMAC1Q96GE9 116 aa7.2□□□□□ -1.26
LIMCH1-213ENST00000511496 SPINK6Q6UWN8 80 aa7.18□□□□□ -1.26
LIMCH1-213ENST00000511496 ALMS1Q8TCU4 4167 aa7.18□□□□□ -1.26
LIMCH1-213ENST00000511496 KRTAP11-1Q8IUC1 163 aa7.18□□□□□ -1.26
LIMCH1-213ENST00000511496 P0C880 135 aa7.16□□□□□ -1.26
LIMCH1-213ENST00000511496 DNAH10OSP0CZ25 163 aa7.15□□□□□ -1.26
LIMCH1-213ENST00000511496 SPRR1BP22528 89 aa7.14□□□□□ -1.27
LIMCH1-213ENST00000511496 NBEAL1Q6ZS30 2694 aa7.14□□□□□ -1.27
LIMCH1-213ENST00000511496 CHTF8P0CG12 524 aa7.13□□□□□ -1.27
LIMCH1-213ENST00000511496 OXLD1Q5BKU9 147 aa7.13□□□□□ -1.27
LIMCH1-213ENST00000511496 KRTAP10-3P60369 221 aa7.13□□□□□ -1.27
LIMCH1-213ENST00000511496 ANK3Q12955 4377 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-213ENST00000511496 A8MUU9 505 aa7.13□□□□□ -1.27
LIMCH1-213ENST00000511496 IGLV5-52A0A0A0MRZ9 124 aa7.12□□□□□ -1.27
LIMCH1-213ENST00000511496 INAFM1C9JVW0 142 aa7.12□□□□□ -1.27
LIMCH1-213ENST00000511496 SPINK1P00995 79 aa7.12□□□□□ -1.27
LIMCH1-213ENST00000511496 H3BNG1 76 aa7.1□□□□□ -1.27
LIMCH1-213ENST00000511496 DEFB113Q30KQ7 82 aa7.1□□□□□ -1.27
LIMCH1-213ENST00000511496 TENM3Q9P273 2699 aa7.1□□□□□ -1.27
LIMCH1-213ENST00000511496 A0A0A0MQY5 61 aa7.1□□□□□ -1.27
LIMCH1-213ENST00000511496 IGLV7-43P04211 117 aa7.09□□□□□ -1.27
LIMCH1-213ENST00000511496 FASNP49327 2511 aaKnown RBP7.08□□□□□ -1.28
LIMCH1-213ENST00000511496 ATRQ13535 2644 aa7.08□□□□□ -1.28
LIMCH1-213ENST00000511496 LINC00304Q8N9R0 145 aa7.07□□□□□ -1.28
LIMCH1-213ENST00000511496 KRTAP13-3Q3SY46 172 aa7.07□□□□□ -1.28
LIMCH1-213ENST00000511496 TENM1Q9UKZ4 2725 aa7.05□□□□□ -1.28
LIMCH1-213ENST00000511496 SSBP3-AS1Q7Z2R9 100 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms