RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 CFAP54Q96N23 3096 aa10.15□□□□□ -0.78
PCDHA1-203ENST00000504120 WDFY4Q6ZS81 3184 aa10.14□□□□□ -0.79
PCDHA1-203ENST00000504120 Q75L30 129 aa10.14□□□□□ -0.79
PCDHA1-203ENST00000504120 IGSF10Q6WRI0 2623 aa10.13□□□□□ -0.79
PCDHA1-203ENST00000504120 A0A1B0GU33 70 aa10.13□□□□□ -0.79
PCDHA1-203ENST00000504120 ZCCHC13Q8WW36 166 aaKnown RBP10.12□□□□□ -0.79
PCDHA1-203ENST00000504120 DSPP15924 2871 aaKnown RBP10.12□□□□□ -0.79
PCDHA1-203ENST00000504120 A0A0C4DFX4 3053 aa10.11□□□□□ -0.79
PCDHA1-203ENST00000504120 UNC80Q8N2C7 3258 aa10.11□□□□□ -0.79
PCDHA1-203ENST00000504120 LINC00472Q9H8W2 130 aa10.11□□□□□ -0.79
PCDHA1-203ENST00000504120 LINC01558Q9Y6Z2 57 aa10.09□□□□□ -0.79
PCDHA1-203ENST00000504120 TRIOO75962 3097 aa10.09□□□□□ -0.79
PCDHA1-203ENST00000504120 Q8N9P0 234 aaPredicted RBP10.08□□□□□ -0.8
PCDHA1-203ENST00000504120 KRTAP26-1Q6PEX3 210 aa10.07□□□□□ -0.8
PCDHA1-203ENST00000504120 UNC79Q9P2D8 2635 aa10.07□□□□□ -0.8
PCDHA1-203ENST00000504120 KRTAP1-5Q9BYS1 174 aa10.04□□□□□ -0.8
PCDHA1-203ENST00000504120 Q5W150 140 aa10.02□□□□□ -0.8
PCDHA1-203ENST00000504120 CDH23Q9H251 3354 aa10.01□□□□□ -0.81
PCDHA1-203ENST00000504120 CYSTM1Q9H1C7 97 aa10□□□□□ -0.81
PCDHA1-203ENST00000504120 Q5XG85 94 aa10□□□□□ -0.81
PCDHA1-203ENST00000504120 FP248Q71RG6 208 aaPredicted RBP9.97□□□□□ -0.81
PCDHA1-203ENST00000504120 CAMK2N1Q7Z7J9 78 aa9.97□□□□□ -0.81
PCDHA1-203ENST00000504120 CSAG1Q6PB30 78 aa9.97□□□□□ -0.81
PCDHA1-203ENST00000504120 DMAC1Q96GE9 116 aa9.96□□□□□ -0.82
PCDHA1-203ENST00000504120 VPS13AQ96RL7 3174 aa9.95□□□□□ -0.82
PCDHA1-203ENST00000504120 S4R3F8 94 aa9.94□□□□□ -0.82
PCDHA1-203ENST00000504120 CHD6Q8TD26 2715 aa9.94□□□□□ -0.82
PCDHA1-203ENST00000504120 LUZP6Q538Z0 58 aa9.93□□□□□ -0.82
PCDHA1-203ENST00000504120 TEP1Q99973 2627 aaKnown RBP9.93□□□□□ -0.82
PCDHA1-203ENST00000504120 SETXQ7Z333 2677 aaKnown RBP9.93□□□□□ -0.82
PCDHA1-203ENST00000504120 XIRP2A4UGR9 3374 aa9.93□□□□□ -0.82
PCDHA1-203ENST00000504120 TEX15Q9BXT5 2789 aa9.92□□□□□ -0.82
PCDHA1-203ENST00000504120 SPINK7P58062 85 aa9.92□□□□□ -0.82
PCDHA1-203ENST00000504120 LINC00483Q53H64 154 aa9.91□□□□□ -0.82
PCDHA1-203ENST00000504120 Q5VV11 94 aa9.9□□□□□ -0.82
PCDHA1-203ENST00000504120 STAB1Q9NY15 2570 aa9.89□□□□□ -0.83
PCDHA1-203ENST00000504120 COL6A5A8TX70 2615 aa9.88□□□□□ -0.83
PCDHA1-203ENST00000504120 KRTAP4-16G5E9R7 235 aaPredicted RBP9.86□□□□□ -0.83
PCDHA1-203ENST00000504120 KRTAP10-1P60331 282 aa9.85□□□□□ -0.83
PCDHA1-203ENST00000504120 SZT2Q5T011 3432 aa9.85□□□□□ -0.83
PCDHA1-203ENST00000504120 M0R2T5 61 aa9.85□□□□□ -0.83
PCDHA1-203ENST00000504120 MAP1AP78559 2803 aaPredicted RBP9.82□□□□□ -0.84
PCDHA1-203ENST00000504120 GCN1Q92616 2671 aaKnown RBP9.82□□□□□ -0.84
PCDHA1-203ENST00000504120 KRTAP10-2P60368 255 aa9.81□□□□□ -0.84
PCDHA1-203ENST00000504120 FRYQ5TBA9 3013 aa9.81□□□□□ -0.84
PCDHA1-203ENST00000504120 LCE6AA0A183 80 aa9.79□□□□□ -0.84
PCDHA1-203ENST00000504120 SEC61BP60468 96 aaKnown RBP9.79□□□□□ -0.84
PCDHA1-203ENST00000504120 Q5VSD8 79 aa9.79□□□□□ -0.84
PCDHA1-203ENST00000504120 LAMA1P25391 3075 aa9.79□□□□□ -0.84
PCDHA1-203ENST00000504120 FLNCQ14315 2725 aa9.78□□□□□ -0.84
PCDHA1-203ENST00000504120 Q6ZR54 194 aa9.78□□□□□ -0.84
PCDHA1-203ENST00000504120 R4GN34 69 aa9.75□□□□□ -0.85
PCDHA1-203ENST00000504120 PRAC1Q96KF2 57 aa9.75□□□□□ -0.85
PCDHA1-203ENST00000504120 NOTCH1P46531 2555 aa9.75□□□□□ -0.85
PCDHA1-203ENST00000504120 KRTAP29-1A8MX34 341 aaPredicted RBP9.75□□□□□ -0.85
PCDHA1-203ENST00000504120 PANO1I0J062 215 aa9.75□□□□□ -0.85
PCDHA1-203ENST00000504120 NBEAL1Q6ZS30 2694 aa9.75□□□□□ -0.85
PCDHA1-203ENST00000504120 BAHCC1Q9P281 2608 aa9.72□□□□□ -0.85
PCDHA1-203ENST00000504120 OXTP01178 125 aa9.72□□□□□ -0.85
PCDHA1-203ENST00000504120 TNRC18O15417 2968 aaPredicted RBP9.71□□□□□ -0.85
PCDHA1-203ENST00000504120 UBR5O95071 2799 aaPredicted RBP9.69□□□□□ -0.86
PCDHA1-203ENST00000504120 RPL37P61927 97 aaKnown RBP9.69□□□□□ -0.86
PCDHA1-203ENST00000504120 H1FX-AS1Q4G0G2 97 aa9.65□□□□□ -0.86
PCDHA1-203ENST00000504120 ATMQ13315 3056 aa9.65□□□□□ -0.87
PCDHA1-203ENST00000504120 ITPR1Q14643 2758 aa9.65□□□□□ -0.87
PCDHA1-203ENST00000504120 VCANP13611 3396 aa9.64□□□□□ -0.87
PCDHA1-203ENST00000504120 ITPR2Q14571 2701 aa9.63□□□□□ -0.87
PCDHA1-203ENST00000504120 FRYLO94915 3013 aa9.63□□□□□ -0.87
PCDHA1-203ENST00000504120 A0A087X002 238 aa9.62□□□□□ -0.87
PCDHA1-203ENST00000504120 NBEAL2Q6ZNJ1 2754 aa9.62□□□□□ -0.87
PCDHA1-203ENST00000504120 ROMO1P60602 79 aa9.61□□□□□ -0.87
PCDHA1-203ENST00000504120 ASB16-AS1Q495Z4 193 aa9.59□□□□□ -0.87
PCDHA1-203ENST00000504120 DMXL2Q8TDJ6 3036 aa9.58□□□□□ -0.88
PCDHA1-203ENST00000504120 CELSR3Q9NYQ7 3312 aa9.58□□□□□ -0.88
PCDHA1-203ENST00000504120 M0QZ58 72 aa9.56□□□□□ -0.88
PCDHA1-203ENST00000504120 COL12A1Q99715 3063 aa9.55□□□□□ -0.88
PCDHA1-203ENST00000504120 ADGRG4Q8IZF6 3080 aa9.55□□□□□ -0.88
PCDHA1-203ENST00000504120 UTP20O75691 2785 aaKnown RBP9.54□□□□□ -0.88
PCDHA1-203ENST00000504120 NSD1Q96L73 2696 aaPredicted RBP9.54□□□□□ -0.88
PCDHA1-203ENST00000504120 Q6ZRN7 208 aaPredicted RBP9.54□□□□□ -0.88
PCDHA1-203ENST00000504120 DNAH14Q0VDD8 3507 aa9.53□□□□□ -0.88
PCDHA1-203ENST00000504120 KMT2BQ9UMN6 2715 aaPredicted RBP9.53□□□□□ -0.88
PCDHA1-203ENST00000504120 NOTCH2NLQ7Z3S9 236 aa9.53□□□□□ -0.88
PCDHA1-203ENST00000504120 KRTAP11-1Q8IUC1 163 aa9.53□□□□□ -0.88
PCDHA1-203ENST00000504120 RPS29P62273 56 aaKnown RBP9.53□□□□□ -0.88
PCDHA1-203ENST00000504120 BOD1L1Q8NFC6 3051 aa9.52□□□□□ -0.89
PCDHA1-203ENST00000504120 COL6A3P12111 3177 aa9.51□□□□□ -0.89
PCDHA1-203ENST00000504120 FLG2Q5D862 2391 aaPredicted RBP9.49□□□□□ -0.89
PCDHA1-203ENST00000504120 KALRNO60229 2985 aa9.49□□□□□ -0.89
PCDHA1-203ENST00000504120 LRBAP50851 2863 aa9.49□□□□□ -0.89
PCDHA1-203ENST00000504120 KRTAP7-1Q8IUC3 87 aa9.49□□□□□ -0.89
PCDHA1-203ENST00000504120 ADM2Q7Z4H4 148 aa9.48□□□□□ -0.89
PCDHA1-203ENST00000504120 NBEAQ8NFP9 2946 aa9.48□□□□□ -0.89
PCDHA1-203ENST00000504120 SPATA8Q6RVD6 105 aa9.46□□□□□ -0.89
PCDHA1-203ENST00000504120 HIVEP1P15822 2718 aa9.46□□□□□ -0.9
PCDHA1-203ENST00000504120 APCP25054 2843 aa9.45□□□□□ -0.9
PCDHA1-203ENST00000504120 DMBT1Q9UGM3 2413 aaPredicted RBP9.44□□□□□ -0.9
PCDHA1-203ENST00000504120 A0A0A0MQY5 61 aa9.44□□□□□ -0.9
PCDHA1-203ENST00000504120 TACC2O95359 2948 aa9.43□□□□□ -0.9
PCDHA1-203ENST00000504120 SPTBN5Q9NRC6 3674 aaKnown RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms