RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 BPTFQ12830 3046 aa-1.54□□□□□ -2.66
VPS50-217ENST00000485140 ANKRD36BQ8N2N9 1353 aa-1.54□□□□□ -2.66
VPS50-217ENST00000485140 F8WEM9 126 aa-1.54□□□□□ -2.66
VPS50-217ENST00000485140 KRTAP19-5Q3LI72 72 aa-1.54□□□□□ -2.66
VPS50-217ENST00000485140 TLN2Q9Y4G6 2542 aa-1.54□□□□□ -2.66
VPS50-217ENST00000485140 ALKQ9UM73 1620 aa-1.55□□□□□ -2.66
VPS50-217ENST00000485140 DNAH5Q8TE73 4624 aa-1.55□□□□□ -2.66
VPS50-217ENST00000485140 COL5A1-AS1Q5SY13 56 aa-1.55□□□□□ -2.66
VPS50-217ENST00000485140 UBE2D4Q9Y2X8 147 aa-1.55□□□□□ -2.66
VPS50-217ENST00000485140 SPENQ96T58 3664 aaKnown RBP-1.55□□□□□ -2.66
VPS50-217ENST00000485140 ZFHX4Q86UP3 3567 aa-1.55□□□□□ -2.66
VPS50-217ENST00000485140 C3orf79P0CE67 100 aa-1.56□□□□□ -2.66
VPS50-217ENST00000485140 MAP3K1Q13233 1512 aa-1.56□□□□□ -2.66
VPS50-217ENST00000485140 ZFYVE16Q7Z3T8 1539 aa-1.56□□□□□ -2.66
VPS50-217ENST00000485140 DYNC2H1Q8NCM8 4307 aaKnown RBP-1.57□□□□□ -2.66
VPS50-217ENST00000485140 LINC00032P0C843 101 aa-1.57□□□□□ -2.66
VPS50-217ENST00000485140 GAFA1Q96PS6 74 aa-1.57□□□□□ -2.66
VPS50-217ENST00000485140 ATMQ13315 3056 aa-1.57□□□□□ -2.66
VPS50-217ENST00000485140 CLTCQ00610 1675 aaKnown RBP-1.58□□□□□ -2.66
VPS50-217ENST00000485140 TNRC6CQ9HCJ0 1690 aaKnown RBP-1.58□□□□□ -2.66
VPS50-217ENST00000485140 MT-ATP8P03928 68 aa-1.58□□□□□ -2.66
VPS50-217ENST00000485140 PRO3102Q9H379 93 aa-1.58□□□□□ -2.66
VPS50-217ENST00000485140 SPTBN5Q9NRC6 3674 aaKnown RBP-1.58□□□□□ -2.66
VPS50-217ENST00000485140 CSMD2Q7Z408 3487 aa-1.59□□□□□ -2.66
VPS50-217ENST00000485140 CENPEQ02224 2701 aa-1.59□□□□□ -2.66
VPS50-217ENST00000485140 LRRC7Q96NW7 1537 aa-1.59□□□□□ -2.66
VPS50-217ENST00000485140 A0A1B0GUT8 65 aa-1.59□□□□□ -2.66
VPS50-217ENST00000485140 FAUP35544 74 aaKnown RBP-1.59□□□□□ -2.66
VPS50-217ENST00000485140 FYCO1Q9BQS8 1478 aa-1.59□□□□□ -2.66
VPS50-217ENST00000485140 MYH4Q9Y623 1939 aa-1.6□□□□□ -2.66
VPS50-217ENST00000485140 TIAM2Q8IVF5 1701 aa-1.6□□□□□ -2.67
VPS50-217ENST00000485140 IQCF6A8MYZ5 107 aa-1.6□□□□□ -2.67
VPS50-217ENST00000485140 LINC00587B1AMM8 73 aa-1.6□□□□□ -2.67
VPS50-217ENST00000485140 PRUNE2Q8WUY3 3088 aa-1.6□□□□□ -2.67
VPS50-217ENST00000485140 EPRSP07814 1512 aaKnown RBP-1.61□□□□□ -2.67
VPS50-217ENST00000485140 CYB5AP00167 134 aa-1.61□□□□□ -2.67
VPS50-217ENST00000485140 S100A10P60903 97 aa-1.61□□□□□ -2.67
VPS50-217ENST00000485140 PRLHP81277 87 aa-1.61□□□□□ -2.67
VPS50-217ENST00000485140 SARNPP82979 210 aaKnown RBP-1.61□□□□□ -2.67
VPS50-217ENST00000485140 PLGLAQ15195 96 aa-1.61□□□□□ -2.67
VPS50-217ENST00000485140 MT1MQ8N339 61 aa-1.61□□□□□ -2.67
VPS50-217ENST00000485140 DNAH17Q9UFH2 4485 aa-1.62□□□□□ -2.67
VPS50-217ENST00000485140 MT2AP02795 61 aa-1.62□□□□□ -2.67
VPS50-217ENST00000485140 MT1GP13640 62 aa-1.62□□□□□ -2.67
VPS50-217ENST00000485140 LINC00158P58513 81 aa-1.62□□□□□ -2.67
VPS50-217ENST00000485140 TRRAPQ9Y4A5 3859 aa-1.62□□□□□ -2.67
VPS50-217ENST00000485140 PLXNC1O60486 1568 aa-1.63□□□□□ -2.67
VPS50-217ENST00000485140 MT1EP04732 61 aa-1.63□□□□□ -2.67
VPS50-217ENST00000485140 SMIM11AP58511 58 aa-1.63□□□□□ -2.67
VPS50-217ENST00000485140 DPY30Q9C005 99 aa-1.64□□□□□ -2.67
VPS50-217ENST00000485140 FANCAO15360 1455 aa-1.64□□□□□ -2.67
VPS50-217ENST00000485140 TEX14Q8IWB6 1497 aa-1.64□□□□□ -2.67
VPS50-217ENST00000485140 SPTAN1Q13813 2472 aaKnown RBP-1.64□□□□□ -2.67
VPS50-217ENST00000485140 HMGN2P05204 90 aaKnown RBP-1.65□□□□□ -2.67
VPS50-217ENST00000485140 RGPD3A6NKT7 1758 aaPredicted RBP-1.65□□□□□ -2.67
VPS50-217ENST00000485140 RGPD4Q7Z3J3 1758 aa-1.65□□□□□ -2.67
VPS50-217ENST00000485140 DNAH10Q8IVF4 4471 aa-1.65□□□□□ -2.67
VPS50-217ENST00000485140 ATP7BP35670 1465 aa-1.66□□□□□ -2.68
VPS50-217ENST00000485140 KRTAP8-1Q8IUC2 63 aa-1.66□□□□□ -2.68
VPS50-217ENST00000485140 SUPT6HQ7KZ85 1726 aaKnown RBP-1.66□□□□□ -2.68
VPS50-217ENST00000485140 USP32Q8NFA0 1604 aa-1.66□□□□□ -2.68
VPS50-217ENST00000485140 SCN11AQ9UI33 1791 aa-1.67□□□□□ -2.68
VPS50-217ENST00000485140 SMR3BP02814 79 aaPredicted RBP-1.67□□□□□ -2.68
VPS50-217ENST00000485140 WFDC9Q8NEX5 89 aa-1.67□□□□□ -2.68
VPS50-217ENST00000485140 MT1LQ93083 61 aa-1.67□□□□□ -2.68
VPS50-217ENST00000485140 RGPD1P0DJD0 1748 aa-1.67□□□□□ -2.68
VPS50-217ENST00000485140 ATP10BO94823 1461 aa-1.68□□□□□ -2.68
VPS50-217ENST00000485140 PEA15Q15121 130 aa-1.68□□□□□ -2.68
VPS50-217ENST00000485140 CLPSL2Q6UWE3 100 aa-1.68□□□□□ -2.68
VPS50-217ENST00000485140 NESP48681 1621 aa-1.69□□□□□ -2.68
VPS50-217ENST00000485140 S100PP25815 95 aa-1.69□□□□□ -2.68
VPS50-217ENST00000485140 TCEAL7Q9BRU2 100 aa-1.69□□□□□ -2.68
VPS50-217ENST00000485140 DEPDC5O75140 1603 aa-1.69□□□□□ -2.68
VPS50-217ENST00000485140 TRAV21A0A0B4J279 112 aa-1.7□□□□□ -2.68
VPS50-217ENST00000485140 NWD1Q149M9 1564 aa-1.7□□□□□ -2.68
VPS50-217ENST00000485140 WIZO95785 1651 aa-1.71□□□□□ -2.68
VPS50-217ENST00000485140 MAGI3Q5TCQ9 1506 aa-1.71□□□□□ -2.68
VPS50-217ENST00000485140 POLR1AO95602 1720 aaPredicted RBP-1.71□□□□□ -2.68
VPS50-217ENST00000485140 BAZ1AQ9NRL2 1556 aaPredicted RBP-1.72□□□□□ -2.68
VPS50-217ENST00000485140 LTN1O94822 1766 aa-1.72□□□□□ -2.68
VPS50-217ENST00000485140 NDUFB1O75438 58 aa-1.72□□□□□ -2.68
VPS50-217ENST00000485140 C14orf144Q96I85 54 aa-1.73□□□□□ -2.69
VPS50-217ENST00000485140 PLIN4Q96Q06 1357 aa-1.73□□□□□ -2.69
VPS50-217ENST00000485140 FREM2Q5SZK8 3169 aa-1.74□□□□□ -2.69
VPS50-217ENST00000485140 GYPAP02724 150 aa-1.74□□□□□ -2.69
VPS50-217ENST00000485140 IFI6P09912 130 aa-1.74□□□□□ -2.69
VPS50-217ENST00000485140 ACBD7Q8N6N7 88 aa-1.74□□□□□ -2.69
VPS50-217ENST00000485140 CNTLNQ9NXG0 1405 aa-1.74□□□□□ -2.69
VPS50-217ENST00000485140 CRYBG3Q68DQ2 2970 aa-1.75□□□□□ -2.69
VPS50-217ENST00000485140 LYNX1G3V0Z9 82 aa-1.75□□□□□ -2.69
VPS50-217ENST00000485140 MYO3AQ8NEV4 1616 aa-1.76□□□□□ -2.69
VPS50-217ENST00000485140 MGAQ8IWI9 3026 aa-1.76□□□□□ -2.69
VPS50-217ENST00000485140 RBP2P50120 134 aa-1.76□□□□□ -2.69
VPS50-217ENST00000485140 DEFB106AQ8N104 65 aa-1.76□□□□□ -2.69
VPS50-217ENST00000485140 MT1FP04733 61 aa-1.77□□□□□ -2.69
VPS50-217ENST00000485140 DEFB130BP0DP73 79 aa-1.77□□□□□ -2.69
VPS50-217ENST00000485140 DEFB130AP0DP74 79 aa-1.77□□□□□ -2.69
VPS50-217ENST00000485140 ABCC10Q5T3U5 1492 aa-1.77□□□□□ -2.69
VPS50-217ENST00000485140 NEXMIFQ5QGS0 1516 aa-1.77□□□□□ -2.69
VPS50-217ENST00000485140 DMDP11532 3685 aa-1.78□□□□□ -2.69
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms