RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 C4AP0C0L4 1744 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 C4BP0C0L5 1744 aa-0.76□□□□□ -2.53
VPS50-216ENST00000484954 RGPD2P0DJD1 1756 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 ALKQ9UM73 1620 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 ARHGAP5Q13017 1502 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 DEFB130BP0DP73 79 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 DEFB130AP0DP74 79 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 LINC00158P58513 81 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 KRTDAPP60985 99 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 PSMG4Q5JS54 123 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 UBE2D4Q9Y2X8 147 aa-0.77□□□□□ -2.53
VPS50-216ENST00000484954 CDC42BPAQ5VT25 1732 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 WIZO95785 1651 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 SHPRHQ149N8 1683 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 PLXNC1O60486 1568 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 TRBV25-1A0A075B6N4 114 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 C3orf79P0CE67 100 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 COX7BP24311 80 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 TMEM203Q969S6 136 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 TRGV9Q99603 122 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 PRO3102Q9H379 93 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 PSENENQ9NZ42 101 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 PREX1Q8TCU6 1659 aa-0.78□□□□□ -2.53
VPS50-216ENST00000484954 CDC42BPGQ6DT37 1551 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 UBR3Q6ZT12 1888 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 LYNX1G3V0Z9 82 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 MT1FP04733 61 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 TNP1P09430 55 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 DEFB106AQ8N104 65 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 RGPD8O14715 1765 aaPredicted RBP-0.79□□□□□ -2.54
VPS50-216ENST00000484954 RGPD5Q99666 1765 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 NALCNQ8IZF0 1738 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 TOP2BQ02880 1626 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 SMARCA2P51531 1590 aa-0.79□□□□□ -2.54
VPS50-216ENST00000484954 NRXN1Q9ULB1 1477 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 KIF20BQ96Q89 1820 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 QSER1Q2KHR3 1735 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 MON2Q7Z3U7 1717 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 TIAM2Q8IVF5 1701 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 CUL7Q14999 1698 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 MMP24-AS1A0A0U1RRL7 71 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 GNGT2O14610 69 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 MRPS10P82664 201 aaKnown RBP-0.8□□□□□ -2.54
VPS50-216ENST00000484954 GTF2H5Q6ZYL4 71 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 VAMP8Q9BV40 100 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 AP4S1Q9Y587 144 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 USP32Q8NFA0 1604 aa-0.8□□□□□ -2.54
VPS50-216ENST00000484954 C5P01031 1676 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 ZNF831Q5JPB2 1677 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.81□□□□□ -2.54
VPS50-216ENST00000484954 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.81□□□□□ -2.54
VPS50-216ENST00000484954 IGLV5-48A0A075B6I7 105 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 F8WEM9 126 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 MT-ATP8P03928 68 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 IAPPP10997 89 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 PMCHL1Q16048 86 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 SERP2Q8N6R1 65 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 WFDC9Q8NEX5 89 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 FAM135AQ9P2D6 1515 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 LRRC9Q6ZRR7 1453 aa-0.81□□□□□ -2.54
VPS50-216ENST00000484954 C20orf202A1L168 122 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 D6R8Y8 96 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 NDUFC1O43677 76 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 MPC2O95563 127 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 IFI6P09912 130 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 ALKAL2Q6UX46 152 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 MUSTN1Q8IVN3 82 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 RGPD1P0DJD0 1748 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 SPHKAPQ2M3C7 1700 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 DEPDC5O75140 1603 aa-0.82□□□□□ -2.54
VPS50-216ENST00000484954 MYH4Q9Y623 1939 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 ATP7BP35670 1465 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 ABCC10Q5T3U5 1492 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 MLH3Q9UHC1 1453 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 LCE6AA0A183 80 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 TMEM218A2RU14 115 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 DEFB4AO15263 64 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 LEPROTL1O95214 131 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 RPL38P63173 70 aaKnown RBP-0.83□□□□□ -2.54
VPS50-216ENST00000484954 HMGN3Q15651 99 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 GAFA1Q96PS6 74 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 RGPD3A6NKT7 1758 aaPredicted RBP-0.83□□□□□ -2.54
VPS50-216ENST00000484954 RGPD4Q7Z3J3 1758 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 NRKQ7Z2Y5 1582 aa-0.83□□□□□ -2.54
VPS50-216ENST00000484954 CHD1O14646 1710 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 PRDM15P57071 1507 aaPredicted RBP-0.84□□□□□ -2.54
VPS50-216ENST00000484954 ASXL1Q8IXJ9 1541 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 LRRC7Q96NW7 1537 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 FYCO1Q9BQS8 1478 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 RAPGEF2Q9Y4G8 1499 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 TRAV21A0A0B4J279 112 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 IQCF6A8MYZ5 107 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 UQCRHP07919 91 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 WT1-ASQ06250 92 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.84□□□□□ -2.54
VPS50-216ENST00000484954 TOGARAM1Q9Y4F4 1720 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 CRYBG1Q9Y4K1 1723 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 MAGI3Q5TCQ9 1506 aa-0.84□□□□□ -2.54
VPS50-216ENST00000484954 TEX14Q8IWB6 1497 aa-0.85□□□□□ -2.55
VPS50-216ENST00000484954 NESP48681 1621 aa-0.85□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms