RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 IGLV7-46A0A075B6I9 117 aa13.45□□□□□ -0.26
SDF4-206ENST00000478938 PCOTHQ58A44 107 aa13.45□□□□□ -0.26
SDF4-206ENST00000478938 CCDC168Q8NDH2 2452 aa13.44□□□□□ -0.26
SDF4-206ENST00000478938 CNBPP62633 177 aaKnown RBP13.44□□□□□ -0.26
SDF4-206ENST00000478938 UNC79Q9P2D8 2635 aa13.43□□□□□ -0.26
SDF4-206ENST00000478938 IGLV1-50A0A075B6I6 118 aa13.41□□□□□ -0.26
SDF4-206ENST00000478938 HIVEP2P31629 2446 aa13.4□□□□□ -0.26
SDF4-206ENST00000478938 ADM2Q7Z4H4 148 aa13.4□□□□□ -0.26
SDF4-206ENST00000478938 SPRR1AP35321 89 aa13.4□□□□□ -0.26
SDF4-206ENST00000478938 MTORP42345 2549 aa13.36□□□□□ -0.27
SDF4-206ENST00000478938 FASNP49327 2511 aaKnown RBP13.34□□□□□ -0.27
SDF4-206ENST00000478938 IGLV5-37A0A075B6J1 123 aa13.34□□□□□ -0.27
SDF4-206ENST00000478938 ITPR3Q14573 2671 aa13.32□□□□□ -0.28
SDF4-206ENST00000478938 KRTAP7-1Q8IUC3 87 aa13.32□□□□□ -0.28
SDF4-206ENST00000478938 DEFB113Q30KQ7 82 aa13.31□□□□□ -0.28
SDF4-206ENST00000478938 Q8NAQ8 132 aa13.31□□□□□ -0.28
SDF4-206ENST00000478938 LINC01554Q52M75 96 aa13.29□□□□□ -0.28
SDF4-206ENST00000478938 MDFIQ99750 246 aa13.29□□□□□ -0.28
SDF4-206ENST00000478938 ITPR2Q14571 2701 aa13.29□□□□□ -0.28
SDF4-206ENST00000478938 VWFP04275 2813 aa13.29□□□□□ -0.28
SDF4-206ENST00000478938 ACANP16112 2415 aa13.28□□□□□ -0.28
SDF4-206ENST00000478938 A8MWP4 228 aa13.28□□□□□ -0.28
SDF4-206ENST00000478938 ANK3Q12955 4377 aaKnown RBP13.28□□□□□ -0.28
SDF4-206ENST00000478938 SPART-AS1P0CW21 52 aa13.27□□□□□ -0.29
SDF4-206ENST00000478938 HRES1P13985 223 aa13.27□□□□□ -0.29
SDF4-206ENST00000478938 FLNAP21333 2647 aaKnown RBP13.26□□□□□ -0.29
SDF4-206ENST00000478938 PLA2G2DQ9UNK4 145 aa13.25□□□□□ -0.29
SDF4-206ENST00000478938 HIVEP1P15822 2718 aa13.24□□□□□ -0.29
SDF4-206ENST00000478938 HECTD1Q9ULT8 2610 aa13.23□□□□□ -0.29
SDF4-206ENST00000478938 KRTAP1-3Q8IUG1 177 aa13.23□□□□□ -0.29
SDF4-206ENST00000478938 PKD1L1Q8TDX9 2849 aa13.22□□□□□ -0.29
SDF4-206ENST00000478938 MMP24-AS1A0A0U1RRL7 71 aa13.22□□□□□ -0.29
SDF4-206ENST00000478938 H0Y9J4 135 aa13.22□□□□□ -0.29
SDF4-206ENST00000478938 BAHCC1Q9P281 2608 aa13.21□□□□□ -0.29
SDF4-206ENST00000478938 REG3GQ6UW15 175 aa13.2□□□□□ -0.3
SDF4-206ENST00000478938 LINC00472Q9H8W2 130 aa13.2□□□□□ -0.3
SDF4-206ENST00000478938 PRLHP81277 87 aa13.19□□□□□ -0.3
SDF4-206ENST00000478938 IGLV8-61A0A075B6I0 122 aa13.18□□□□□ -0.3
SDF4-206ENST00000478938 NOTCH2Q04721 2471 aa13.18□□□□□ -0.3
SDF4-206ENST00000478938 TLX1NBP0CAT3 122 aa13.18□□□□□ -0.3
SDF4-206ENST00000478938 SRRM2Q9UQ35 2752 aaKnown RBP13.17□□□□□ -0.3
SDF4-206ENST00000478938 PLA2G1BP04054 148 aaKnown RBP13.17□□□□□ -0.3
SDF4-206ENST00000478938 PDZD2O15018 2839 aa13.14□□□□□ -0.31
SDF4-206ENST00000478938 PRR26Q8N8Z3 221 aa13.14□□□□□ -0.31
SDF4-206ENST00000478938 TENM2Q9NT68 2774 aa13.13□□□□□ -0.31
SDF4-206ENST00000478938 IGKV2-24A0A0C4DH68 120 aa13.12□□□□□ -0.31
SDF4-206ENST00000478938 CASC10Q5T4H9 136 aa13.08□□□□□ -0.32
SDF4-206ENST00000478938 KRTAP10-3P60369 221 aa13.06□□□□□ -0.32
SDF4-206ENST00000478938 CSMD3Q7Z407 3707 aa13.06□□□□□ -0.32
SDF4-206ENST00000478938 A0A096LNI7 61 aa13.05□□□□□ -0.32
SDF4-206ENST00000478938 TRRAPQ9Y4A5 3859 aa13.05□□□□□ -0.32
SDF4-206ENST00000478938 Q6ZR54 194 aa13.04□□□□□ -0.32
SDF4-206ENST00000478938 RTL8CO15255 209 aa13.02□□□□□ -0.32
SDF4-206ENST00000478938 TP53AIP1Q9HCN2 124 aa13.02□□□□□ -0.32
SDF4-206ENST00000478938 LINC01556Q5JQF7 62 aa13.02□□□□□ -0.33
SDF4-206ENST00000478938 KRTAP1-1Q07627 177 aa12.99□□□□□ -0.33
SDF4-206ENST00000478938 FLNBO75369 2602 aaKnown RBP12.98□□□□□ -0.33
SDF4-206ENST00000478938 DEFB131BA0A096LNP1 70 aa12.96□□□□□ -0.33
SDF4-206ENST00000478938 ASB16-AS1Q495Z4 193 aa12.96□□□□□ -0.33
SDF4-206ENST00000478938 SMR3AQ99954 134 aa12.95□□□□□ -0.34
SDF4-206ENST00000478938 CSAG1Q6PB30 78 aa12.93□□□□□ -0.34
SDF4-206ENST00000478938 H3BNG1 76 aa12.92□□□□□ -0.34
SDF4-206ENST00000478938 C8orf17Q9NRJ1 99 aa12.92□□□□□ -0.34
SDF4-206ENST00000478938 RETNLBQ9BQ08 111 aa12.91□□□□□ -0.34
SDF4-206ENST00000478938 K7EIL1 84 aa12.89□□□□□ -0.35
SDF4-206ENST00000478938 Q96NJ1 140 aa12.89□□□□□ -0.35
SDF4-206ENST00000478938 FBN1P35555 2871 aaKnown RBP12.88□□□□□ -0.35
SDF4-206ENST00000478938 IGHV6-1A0A0B4J1U7 121 aa12.87□□□□□ -0.35
SDF4-206ENST00000478938 ALMS1Q8TCU4 4167 aa12.86□□□□□ -0.35
SDF4-206ENST00000478938 TEP1Q99973 2627 aaKnown RBP12.86□□□□□ -0.35
SDF4-206ENST00000478938 SPATA8Q6RVD6 105 aa12.86□□□□□ -0.35
SDF4-206ENST00000478938 KRTAP11-1Q8IUC1 163 aa12.84□□□□□ -0.35
SDF4-206ENST00000478938 SPRR1BP22528 89 aa12.83□□□□□ -0.36
SDF4-206ENST00000478938 A0A1B0GU69 56 aa12.82□□□□□ -0.36
SDF4-206ENST00000478938 TENM1Q9UKZ4 2725 aa12.82□□□□□ -0.36
SDF4-206ENST00000478938 DNAH10OSP0CZ25 163 aa12.81□□□□□ -0.36
SDF4-206ENST00000478938 TENM3Q9P273 2699 aa12.8□□□□□ -0.36
SDF4-206ENST00000478938 MIR22HGQ0VDD5 57 aa12.78□□□□□ -0.36
SDF4-206ENST00000478938 MRPL34Q9BQ48 92 aaKnown RBP12.78□□□□□ -0.36
SDF4-206ENST00000478938 A0A087X002 238 aa12.78□□□□□ -0.36
SDF4-206ENST00000478938 NOTCH2NLQ7Z3S9 236 aa12.78□□□□□ -0.36
SDF4-206ENST00000478938 ACYP2P14621 99 aa12.77□□□□□ -0.36
SDF4-206ENST00000478938 A0A1B0GVX0 72 aa12.76□□□□□ -0.37
SDF4-206ENST00000478938 Q5W150 140 aa12.74□□□□□ -0.37
SDF4-206ENST00000478938 DNAH1Q9P2D7 4330 aa12.73□□□□□ -0.37
SDF4-206ENST00000478938 IGLV9-49A0A0B4J1Y8 123 aa12.71□□□□□ -0.38
SDF4-206ENST00000478938 COL7A1Q02388 2944 aa12.69□□□□□ -0.38
SDF4-206ENST00000478938 UQCR11O14957 56 aa12.68□□□□□ -0.38
SDF4-206ENST00000478938 NSD1Q96L73 2696 aaPredicted RBP12.68□□□□□ -0.38
SDF4-206ENST00000478938 CHTF8P0CG12 524 aa12.66□□□□□ -0.38
SDF4-206ENST00000478938 CDK2AP2O75956 126 aa12.66□□□□□ -0.38
SDF4-206ENST00000478938 INAFM1C9JVW0 142 aa12.65□□□□□ -0.38
SDF4-206ENST00000478938 C1orf134Q5TEV5 83 aa12.64□□□□□ -0.39
SDF4-206ENST00000478938 MAST4O15021 2626 aa12.64□□□□□ -0.39
SDF4-206ENST00000478938 KRTAP13-3Q3SY46 172 aa12.63□□□□□ -0.39
SDF4-206ENST00000478938 DMAC1Q96GE9 116 aa12.63□□□□□ -0.39
SDF4-206ENST00000478938 ATRQ13535 2644 aa12.63□□□□□ -0.39
SDF4-206ENST00000478938 DNAH10Q8IVF4 4471 aa12.6□□□□□ -0.39
SDF4-206ENST00000478938 ZNF861PO60384 105 aa12.6□□□□□ -0.39
SDF4-206ENST00000478938 ZNF706Q9Y5V0 76 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms