RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 PCNTO95613 3336 aa8.44□□□□□ -1.06
COL6A3-209ENST00000472056 CFAP54Q96N23 3096 aa8.42□□□□□ -1.06
COL6A3-209ENST00000472056 ITPR1Q14643 2758 aa8.42□□□□□ -1.06
COL6A3-209ENST00000472056 KRTAP16-1A8MUX0 517 aa8.42□□□□□ -1.06
COL6A3-209ENST00000472056 SETXQ7Z333 2677 aaKnown RBP8.41□□□□□ -1.06
COL6A3-209ENST00000472056 UTP20O75691 2785 aaKnown RBP8.41□□□□□ -1.06
COL6A3-209ENST00000472056 NSD1Q96L73 2696 aaPredicted RBP8.4□□□□□ -1.06
COL6A3-209ENST00000472056 SPRR1AP35321 89 aa8.36□□□□□ -1.07
COL6A3-209ENST00000472056 A0A1W2PNN7 141 aa8.36□□□□□ -1.07
COL6A3-209ENST00000472056 ROMO1P60602 79 aa8.36□□□□□ -1.07
COL6A3-209ENST00000472056 MMP24-AS1A0A0U1RRL7 71 aa8.35□□□□□ -1.07
COL6A3-209ENST00000472056 A0A096LNT2 108 aa8.34□□□□□ -1.07
COL6A3-209ENST00000472056 Q6ZSA8 131 aa8.34□□□□□ -1.07
COL6A3-209ENST00000472056 A0A0C4DFX4 3053 aa8.34□□□□□ -1.07
COL6A3-209ENST00000472056 SPRR1BP22528 89 aa8.33□□□□□ -1.08
COL6A3-209ENST00000472056 KRTAP24-1Q3LI83 254 aa8.33□□□□□ -1.08
COL6A3-209ENST00000472056 ZCCHC13Q8WW36 166 aaKnown RBP8.33□□□□□ -1.08
COL6A3-209ENST00000472056 UTRNP46939 3433 aa8.33□□□□□ -1.08
COL6A3-209ENST00000472056 S4R3F8 94 aa8.32□□□□□ -1.08
COL6A3-209ENST00000472056 LINC00472Q9H8W2 130 aa8.32□□□□□ -1.08
COL6A3-209ENST00000472056 A0A087X002 238 aa8.32□□□□□ -1.08
COL6A3-209ENST00000472056 NBEAL2Q6ZNJ1 2754 aa8.3□□□□□ -1.08
COL6A3-209ENST00000472056 C5orf42Q9H799 3197 aa8.3□□□□□ -1.08
COL6A3-209ENST00000472056 RPL37P61927 97 aaKnown RBP8.29□□□□□ -1.08
COL6A3-209ENST00000472056 K7EIL1 84 aa8.29□□□□□ -1.08
COL6A3-209ENST00000472056 LAMA2P24043 3122 aaKnown RBP8.28□□□□□ -1.08
COL6A3-209ENST00000472056 Q6ZR54 194 aa8.28□□□□□ -1.08
COL6A3-209ENST00000472056 TRANK1O15050 2925 aa8.28□□□□□ -1.08
COL6A3-209ENST00000472056 PRAC1Q96KF2 57 aa8.28□□□□□ -1.08
COL6A3-209ENST00000472056 KRTAP10-11P60412 298 aa8.27□□□□□ -1.09
COL6A3-209ENST00000472056 R4GN34 69 aa8.26□□□□□ -1.09
COL6A3-209ENST00000472056 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.25□□□□□ -1.09
COL6A3-209ENST00000472056 A0A0G2JQZ4 141 aa8.24□□□□□ -1.09
COL6A3-209ENST00000472056 Q5W150 140 aa8.24□□□□□ -1.09
COL6A3-209ENST00000472056 H1FX-AS1Q4G0G2 97 aa8.21□□□□□ -1.09
COL6A3-209ENST00000472056 ANAPC11Q9NYG5 84 aa8.21□□□□□ -1.09
COL6A3-209ENST00000472056 M0R2T5 61 aa8.21□□□□□ -1.1
COL6A3-209ENST00000472056 UBR5O95071 2799 aaPredicted RBP8.2□□□□□ -1.1
COL6A3-209ENST00000472056 PLAC8Q9NZF1 115 aa8.2□□□□□ -1.1
COL6A3-209ENST00000472056 CYSTM1Q9H1C7 97 aa8.2□□□□□ -1.1
COL6A3-209ENST00000472056 IGSF10Q6WRI0 2623 aa8.18□□□□□ -1.1
COL6A3-209ENST00000472056 SPATA8Q6RVD6 105 aa8.16□□□□□ -1.1
COL6A3-209ENST00000472056 DSPP15924 2871 aaKnown RBP8.15□□□□□ -1.11
COL6A3-209ENST00000472056 FRYLO94915 3013 aa8.12□□□□□ -1.11
COL6A3-209ENST00000472056 MGAQ8IWI9 3026 aa8.11□□□□□ -1.11
COL6A3-209ENST00000472056 FRYQ5TBA9 3013 aa8.09□□□□□ -1.11
COL6A3-209ENST00000472056 OXTP01178 125 aa8.09□□□□□ -1.11
COL6A3-209ENST00000472056 SMR3BP02814 79 aaPredicted RBP8.08□□□□□ -1.12
COL6A3-209ENST00000472056 LRBAP50851 2863 aa8.07□□□□□ -1.12
COL6A3-209ENST00000472056 CASC10Q5T4H9 136 aa8.07□□□□□ -1.12
COL6A3-209ENST00000472056 VPS13AQ96RL7 3174 aa8.05□□□□□ -1.12
COL6A3-209ENST00000472056 SEC61BP60468 96 aaKnown RBP8.05□□□□□ -1.12
COL6A3-209ENST00000472056 PLAC4Q8WY50 150 aa8.05□□□□□ -1.12
COL6A3-209ENST00000472056 LCE6AA0A183 80 aa8.03□□□□□ -1.12
COL6A3-209ENST00000472056 KRTAP26-1Q6PEX3 210 aa8.03□□□□□ -1.12
COL6A3-209ENST00000472056 A6NN06 94 aa8.02□□□□□ -1.13
COL6A3-209ENST00000472056 TRIOO75962 3097 aa8.01□□□□□ -1.13
COL6A3-209ENST00000472056 KRTAP29-1A8MX34 341 aaPredicted RBP8.01□□□□□ -1.13
COL6A3-209ENST00000472056 KRTAP10-3P60369 221 aa8.01□□□□□ -1.13
COL6A3-209ENST00000472056 CHD7Q9P2D1 2997 aa7.99□□□□□ -1.13
COL6A3-209ENST00000472056 KRTAP25-1Q3LHN0 102 aa7.99□□□□□ -1.13
COL6A3-209ENST00000472056 RPS29P62273 56 aaKnown RBP7.99□□□□□ -1.13
COL6A3-209ENST00000472056 XIRP2A4UGR9 3374 aa7.99□□□□□ -1.13
COL6A3-209ENST00000472056 M0QZ58 72 aa7.98□□□□□ -1.13
COL6A3-209ENST00000472056 PANO1I0J062 215 aa7.97□□□□□ -1.13
COL6A3-209ENST00000472056 KRTAP4-16G5E9R7 235 aaPredicted RBP7.95□□□□□ -1.14
COL6A3-209ENST00000472056 KALRNO60229 2985 aa7.95□□□□□ -1.14
COL6A3-209ENST00000472056 REV3LO60673 3130 aa7.95□□□□□ -1.14
COL6A3-209ENST00000472056 CHD9Q3L8U1 2897 aa7.94□□□□□ -1.14
COL6A3-209ENST00000472056 Q8NDZ9 215 aa7.94□□□□□ -1.14
COL6A3-209ENST00000472056 KRTAP1-3Q8IUG1 177 aa7.91□□□□□ -1.14
COL6A3-209ENST00000472056 NIPBLQ6KC79 2804 aaeCLIP7.91□□□□□ -1.14
COL6A3-209ENST00000472056 C20orf166-AS1Q96NR2 134 aa7.89□□□□□ -1.15
COL6A3-209ENST00000472056 FLNCQ14315 2725 aa7.88□□□□□ -1.15
COL6A3-209ENST00000472056 KRTAP1-1Q07627 177 aa7.86□□□□□ -1.15
COL6A3-209ENST00000472056 NDUFAF8A1L188 74 aa7.86□□□□□ -1.15
COL6A3-209ENST00000472056 ADM2Q7Z4H4 148 aa7.85□□□□□ -1.15
COL6A3-209ENST00000472056 ASH1LQ9NR48 2969 aaKnown RBP7.84□□□□□ -1.15
COL6A3-209ENST00000472056 TACC2O95359 2948 aa7.83□□□□□ -1.16
COL6A3-209ENST00000472056 FREM2Q5SZK8 3169 aa7.8□□□□□ -1.16
COL6A3-209ENST00000472056 NF1P21359 2839 aa7.78□□□□□ -1.16
COL6A3-209ENST00000472056 PP632Q6XCG6 107 aa7.78□□□□□ -1.16
COL6A3-209ENST00000472056 WDFY4Q6ZS81 3184 aa7.76□□□□□ -1.17
COL6A3-209ENST00000472056 PRUNE2Q8WUY3 3088 aa7.76□□□□□ -1.17
COL6A3-209ENST00000472056 NBEAQ8NFP9 2946 aa7.75□□□□□ -1.17
COL6A3-209ENST00000472056 MKI67P46013 3256 aaKnown RBP7.75□□□□□ -1.17
COL6A3-209ENST00000472056 HIVEP1P15822 2718 aa7.75□□□□□ -1.17
COL6A3-209ENST00000472056 TENM1Q9UKZ4 2725 aa7.74□□□□□ -1.17
COL6A3-209ENST00000472056 CELSR3Q9NYQ7 3312 aa7.73□□□□□ -1.17
COL6A3-209ENST00000472056 TENM3Q9P273 2699 aa7.73□□□□□ -1.17
COL6A3-209ENST00000472056 CELSR2Q9HCU4 2923 aa7.72□□□□□ -1.17
COL6A3-209ENST00000472056 RANBP2P49792 3224 aaKnown RBP7.68□□□□□ -1.18
COL6A3-209ENST00000472056 COL12A1Q99715 3063 aa7.67□□□□□ -1.18
COL6A3-209ENST00000472056 UNC80Q8N2C7 3258 aa7.67□□□□□ -1.18
COL6A3-209ENST00000472056 ZZEF1O43149 2961 aa7.64□□□□□ -1.19
COL6A3-209ENST00000472056 A8MUU9 505 aa7.62□□□□□ -1.19
COL6A3-209ENST00000472056 TGP01266 2768 aa7.62□□□□□ -1.19
COL6A3-209ENST00000472056 TNP1P09430 55 aa7.62□□□□□ -1.19
COL6A3-209ENST00000472056 NOTCH2NLQ7Z3S9 236 aa7.62□□□□□ -1.19
COL6A3-209ENST00000472056 PDZD2O15018 2839 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms