RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 RETNLBQ9BQ08 111 aa7.47□□□□□ -1.21
COL28A1-206ENST00000465339 PAM16Q9Y3D7 125 aa7.47□□□□□ -1.21
COL28A1-206ENST00000465339 C9orf153Q5TBE3 101 aa7.46□□□□□ -1.22
COL28A1-206ENST00000465339 NHP2Q9NX24 153 aaKnown RBP7.46□□□□□ -1.22
COL28A1-206ENST00000465339 LAMTOR3Q9UHA4 124 aa7.46□□□□□ -1.22
COL28A1-206ENST00000465339 TEX49A0A1B0GTD5 131 aa7.45□□□□□ -1.22
COL28A1-206ENST00000465339 RPS29P62273 56 aaKnown RBP7.45□□□□□ -1.22
COL28A1-206ENST00000465339 HIGD1BQ9P298 99 aa7.45□□□□□ -1.22
COL28A1-206ENST00000465339 DEFB105AQ8NG35 78 aa7.44□□□□□ -1.22
COL28A1-206ENST00000465339 LPAP08519 4548 aa7.43□□□□□ -1.22
COL28A1-206ENST00000465339 IGLV7-46A0A075B6I9 117 aa7.43□□□□□ -1.22
COL28A1-206ENST00000465339 SLC25A20O43772 301 aa7.43□□□□□ -1.22
COL28A1-206ENST00000465339 KRTAP3-1Q9BYR8 98 aa7.43□□□□□ -1.22
COL28A1-206ENST00000465339 LCE5AQ5TCM9 118 aa7.42□□□□□ -1.22
COL28A1-206ENST00000465339 FP248Q71RG6 208 aaPredicted RBP7.42□□□□□ -1.22
COL28A1-206ENST00000465339 IGLV5-48A0A075B6I7 105 aa7.41□□□□□ -1.22
COL28A1-206ENST00000465339 TPRXLQ17RH7 258 aa7.41□□□□□ -1.22
COL28A1-206ENST00000465339 LINC00575Q6W349 94 aa7.4□□□□□ -1.22
COL28A1-206ENST00000465339 C12orf57Q99622 126 aa7.4□□□□□ -1.22
COL28A1-206ENST00000465339 LINC01547P58512 204 aaPredicted RBP7.39□□□□□ -1.23
COL28A1-206ENST00000465339 Q1RN00 199 aa7.39□□□□□ -1.23
COL28A1-206ENST00000465339 PYY3Q5JQD4 70 aa7.39□□□□□ -1.23
COL28A1-206ENST00000465339 BVES-AS1Q5T3Y7 98 aa7.39□□□□□ -1.23
COL28A1-206ENST00000465339 C2orf91Q6ZV80 131 aa7.39□□□□□ -1.23
COL28A1-206ENST00000465339 Q8N377 158 aa7.39□□□□□ -1.23
COL28A1-206ENST00000465339 hADV29S1A0JD25 119 aa7.38□□□□□ -1.23
COL28A1-206ENST00000465339 CFC1BP0CG36 223 aa7.38□□□□□ -1.23
COL28A1-206ENST00000465339 CFC1P0CG37 223 aa7.38□□□□□ -1.23
COL28A1-206ENST00000465339 SMIM29Q86T20 159 aa7.38□□□□□ -1.23
COL28A1-206ENST00000465339 RAB37Q96AX2 223 aa7.38□□□□□ -1.23
COL28A1-206ENST00000465339 PRO1933Q9H354 126 aa7.38□□□□□ -1.23
COL28A1-206ENST00000465339 A0A0B4J2C4 111 aa7.36□□□□□ -1.23
COL28A1-206ENST00000465339 CD164Q04900 197 aa7.36□□□□□ -1.23
COL28A1-206ENST00000465339 CEND1Q8N111 149 aa7.36□□□□□ -1.23
COL28A1-206ENST00000465339 LIMD2Q9BT23 127 aa7.35□□□□□ -1.23
COL28A1-206ENST00000465339 H7C2G1 150 aa7.34□□□□□ -1.23
COL28A1-206ENST00000465339 Q6ZQY7 126 aa7.34□□□□□ -1.23
COL28A1-206ENST00000465339 KRTAP4-11Q9BYQ6 195 aa7.34□□□□□ -1.23
COL28A1-206ENST00000465339 SNCGO76070 127 aa7.33□□□□□ -1.24
COL28A1-206ENST00000465339 HRCT1Q6UXD1 115 aa7.33□□□□□ -1.24
COL28A1-206ENST00000465339 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.33□□□□□ -1.24
COL28A1-206ENST00000465339 KRTAP4-2Q9BYR5 136 aa7.33□□□□□ -1.24
COL28A1-206ENST00000465339 H0YGX0 51 aa7.32□□□□□ -1.24
COL28A1-206ENST00000465339 PRO1854Q9UHT4 67 aa7.32□□□□□ -1.24
COL28A1-206ENST00000465339 F8WEM9 126 aa7.31□□□□□ -1.24
COL28A1-206ENST00000465339 KRTAP13-3Q3SY46 172 aa7.31□□□□□ -1.24
COL28A1-206ENST00000465339 PPDPFLQ8WWR9 84 aa7.31□□□□□ -1.24
COL28A1-206ENST00000465339 FXYD2P54710 66 aa7.29□□□□□ -1.24
COL28A1-206ENST00000465339 HSD52Q0P140 79 aa7.29□□□□□ -1.24
COL28A1-206ENST00000465339 Q5XG85 94 aa7.29□□□□□ -1.24
COL28A1-206ENST00000465339 UQCR10Q9UDW1 63 aa7.29□□□□□ -1.24
COL28A1-206ENST00000465339 RNF213Q63HN8 5207 aa7.28□□□□□ -1.24
COL28A1-206ENST00000465339 OCIAD2Q56VL3 154 aa7.28□□□□□ -1.24
COL28A1-206ENST00000465339 IGLV8-61A0A075B6I0 122 aa7.27□□□□□ -1.25
COL28A1-206ENST00000465339 Q6JHZ5 121 aa7.27□□□□□ -1.25
COL28A1-206ENST00000465339 SNHG12Q9BXW3 62 aa7.27□□□□□ -1.25
COL28A1-206ENST00000465339 A0A0G2JQZ4 141 aa7.25□□□□□ -1.25
COL28A1-206ENST00000465339 A0A1B0GX51 115 aa7.25□□□□□ -1.25
COL28A1-206ENST00000465339 TCL1BO95988 128 aa7.23□□□□□ -1.25
COL28A1-206ENST00000465339 FAM218AQ96MZ4 157 aa7.23□□□□□ -1.25
COL28A1-206ENST00000465339 IGFL1Q6UW32 110 aa7.22□□□□□ -1.25
COL28A1-206ENST00000465339 CLEC2BQ92478 149 aa7.22□□□□□ -1.25
COL28A1-206ENST00000465339 C1orf195Q5TG92 126 aa7.21□□□□□ -1.26
COL28A1-206ENST00000465339 COX6CP09669 75 aa7.2□□□□□ -1.26
COL28A1-206ENST00000465339 PSMB2P49721 201 aa7.2□□□□□ -1.26
COL28A1-206ENST00000465339 A0A0U1RQV1 116 aa7.19□□□□□ -1.26
COL28A1-206ENST00000465339 K7ERJ3 54 aa7.19□□□□□ -1.26
COL28A1-206ENST00000465339 NDUFV3P56181 108 aaKnown RBP7.19□□□□□ -1.26
COL28A1-206ENST00000465339 SEC61BP60468 96 aaKnown RBP7.19□□□□□ -1.26
COL28A1-206ENST00000465339 ASB16-AS1Q495Z4 193 aa7.19□□□□□ -1.26
COL28A1-206ENST00000465339 TRBV7-7A0A0K0K1E9 115 aa7.18□□□□□ -1.26
COL28A1-206ENST00000465339 H3BQ85 93 aa7.17□□□□□ -1.26
COL28A1-206ENST00000465339 LOC105371267A0A1B0GV96 52 aa7.16□□□□□ -1.26
COL28A1-206ENST00000465339 H3BUT2 72 aa7.16□□□□□ -1.26
COL28A1-206ENST00000465339 DNAL4O96015 105 aa7.16□□□□□ -1.26
COL28A1-206ENST00000465339 SMIM6P0DI80 62 aa7.16□□□□□ -1.26
COL28A1-206ENST00000465339 FABP2P12104 132 aa7.16□□□□□ -1.26
COL28A1-206ENST00000465339 MUC17Q685J3 4493 aa7.15□□□□□ -1.27
COL28A1-206ENST00000465339 H3BMG7 143 aa7.14□□□□□ -1.27
COL28A1-206ENST00000465339 Q6Q795 121 aa7.14□□□□□ -1.27
COL28A1-206ENST00000465339 ORMDL1Q9P0S3 153 aa7.14□□□□□ -1.27
COL28A1-206ENST00000465339 MUC2Q02817 5179 aa7.14□□□□□ -1.27
COL28A1-206ENST00000465339 C9orf92A6NGG3 77 aa7.13□□□□□ -1.27
COL28A1-206ENST00000465339 UBE2V1Q13404 147 aa7.13□□□□□ -1.27
COL28A1-206ENST00000465339 TEN1Q86WV5 123 aa7.13□□□□□ -1.27
COL28A1-206ENST00000465339 TMEM256-PLSCR3K7ERE1 68 aa7.12□□□□□ -1.27
COL28A1-206ENST00000465339 M0R143 59 aa7.12□□□□□ -1.27
COL28A1-206ENST00000465339 SCGB1C2P0DMR2 95 aa7.11□□□□□ -1.27
COL28A1-206ENST00000465339 SS18L2Q9UHA2 77 aa7.11□□□□□ -1.27
COL28A1-206ENST00000465339 LST1O00453 97 aa7.1□□□□□ -1.27
COL28A1-206ENST00000465339 TRACP01848 142 aa7.1□□□□□ -1.27
COL28A1-206ENST00000465339 ANKRD29Q8N6D5 301 aa7.07□□□□□ -1.28
COL28A1-206ENST00000465339 TSTD3H0UI37 97 aa7.06□□□□□ -1.28
COL28A1-206ENST00000465339 KRTAP4-1Q9BYQ7 146 aa7.05□□□□□ -1.28
COL28A1-206ENST00000465339 A0A087WSZ3 146 aa7.04□□□□□ -1.28
COL28A1-206ENST00000465339 A0A1W2PNM2 257 aa7.04□□□□□ -1.28
COL28A1-206ENST00000465339 TRBV7-4A0A0J9YYF1 115 aa7.03□□□□□ -1.28
COL28A1-206ENST00000465339 PCOTHQ58A44 107 aa7.03□□□□□ -1.28
COL28A1-206ENST00000465339 RPL37P61927 97 aaKnown RBP7.02□□□□□ -1.29
COL28A1-206ENST00000465339 BAALC-AS2P0C853 105 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms