RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-208ENST00000464454 ABCA6Q8N139 1617 aa0.13□□□□□ -2.39
CLK1-208ENST00000464454 ALMS1Q8TCU4 4167 aa0.12□□□□□ -2.39
CLK1-208ENST00000464454 SPRR2BP35325 72 aa0.12□□□□□ -2.39
CLK1-208ENST00000464454 NRAPQ86VF7 1730 aa0.12□□□□□ -2.39
CLK1-208ENST00000464454 MACF1Q9UPN3 7388 aaKnown RBP0.12□□□□□ -2.39
CLK1-208ENST00000464454 NCOR1O75376 2440 aa0.12□□□□□ -2.39
CLK1-208ENST00000464454 SPTA1P02549 2419 aa0.12□□□□□ -2.39
CLK1-208ENST00000464454 PKD1L1Q8TDX9 2849 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 C4AP0C0L4 1744 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 C4BP0C0L5 1744 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 DDX60LQ5H9U9 1706 aaKnown RBP0.11□□□□□ -2.39
CLK1-208ENST00000464454 ABCA2Q9BZC7 2435 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 K7EMI3 77 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 SFTA3P0C7M3 94 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 DEFB130BP0DP73 79 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 DEFB130AP0DP74 79 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 GNG13Q9P2W3 67 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 PTPN13Q12923 2485 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 TIAM1Q13009 1591 aa0.11□□□□□ -2.39
CLK1-208ENST00000464454 KNL1Q8NG31 2342 aa0.1□□□□□ -2.39
CLK1-208ENST00000464454 UBR5O95071 2799 aaPredicted RBP0.1□□□□□ -2.39
CLK1-208ENST00000464454 IGIPA6NJ69 53 aa0.1□□□□□ -2.39
CLK1-208ENST00000464454 FXYD6Q9H0Q3 95 aa0.1□□□□□ -2.39
CLK1-208ENST00000464454 C3P01024 1663 aa0.1□□□□□ -2.39
CLK1-208ENST00000464454 CCDC180Q9P1Z9 1646 aa0.09□□□□□ -2.39
CLK1-208ENST00000464454 BPTFQ12830 3046 aa0.09□□□□□ -2.39
CLK1-208ENST00000464454 ABCA10Q8WWZ4 1543 aa0.09□□□□□ -2.39
CLK1-208ENST00000464454 SSPOA2VEC9 5147 aa0.08□□□□□ -2.4
CLK1-208ENST00000464454 ALS2Q96Q42 1657 aa0.08□□□□□ -2.4
CLK1-208ENST00000464454 CLASP1Q7Z460 1538 aa0.08□□□□□ -2.4
CLK1-208ENST00000464454 DEFB135Q30KP9 77 aa0.08□□□□□ -2.4
CLK1-208ENST00000464454 COL7A1Q02388 2944 aa0.08□□□□□ -2.4
CLK1-208ENST00000464454 LY75O60449 1722 aa0.07□□□□□ -2.4
CLK1-208ENST00000464454 HSPG2P98160 4391 aa0.07□□□□□ -2.4
CLK1-208ENST00000464454 LOC730098B7Z3J9 87 aa0.07□□□□□ -2.4
CLK1-208ENST00000464454 IAPPP10997 89 aa0.07□□□□□ -2.4
CLK1-208ENST00000464454 RPS27P42677 84 aaKnown RBP0.07□□□□□ -2.4
CLK1-208ENST00000464454 RPS27LQ71UM5 84 aaKnown RBP0.07□□□□□ -2.4
CLK1-208ENST00000464454 KIAA0586Q9BVV6 1533 aa0.07□□□□□ -2.4
CLK1-208ENST00000464454 HMCN2Q8NDA2 5059 aa0.07□□□□□ -2.4
CLK1-208ENST00000464454 PREX2Q70Z35 1606 aa0.06□□□□□ -2.4
CLK1-208ENST00000464454 SMIM5Q71RC9 77 aa0.06□□□□□ -2.4
CLK1-208ENST00000464454 DSPP15924 2871 aaKnown RBP0.06□□□□□ -2.4
CLK1-208ENST00000464454 LRP1BQ9NZR2 4599 aa0.06□□□□□ -2.4
CLK1-208ENST00000464454 ITSN2Q9NZM3 1697 aa0.05□□□□□ -2.4
CLK1-208ENST00000464454 TRANK1O15050 2925 aa0.05□□□□□ -2.4
CLK1-208ENST00000464454 PRLHP81277 87 aa0.05□□□□□ -2.4
CLK1-208ENST00000464454 LRP2P98164 4655 aa0.05□□□□□ -2.4
CLK1-208ENST00000464454 KIF1AQ12756 1690 aa0.05□□□□□ -2.4
CLK1-208ENST00000464454 PDE4DIPQ5VU43 2346 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 PCNX1Q96RV3 2341 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 SERF2P84101 59 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 WT1-ASQ06250 92 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 NMES1Q9C002 83 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 PRRC2CQ9Y520 2896 aaKnown RBP0.04□□□□□ -2.4
CLK1-208ENST00000464454 WNK1Q9H4A3 2382 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 ACANP16112 2415 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 EEA1Q15075 1411 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 HECTD4Q9Y4D8 3996 aa0.04□□□□□ -2.4
CLK1-208ENST00000464454 PRXQ9BXM0 1461 aa0.03□□□□□ -2.4
CLK1-208ENST00000464454 M0R1W7 72 aa0.03□□□□□ -2.4
CLK1-208ENST00000464454 SPRR2AP35326 72 aa0.03□□□□□ -2.4
CLK1-208ENST00000464454 SPRR2GQ9BYE4 73 aa0.03□□□□□ -2.4
CLK1-208ENST00000464454 S4R3F8 94 aa0.03□□□□□ -2.4
CLK1-208ENST00000464454 SETXQ7Z333 2677 aaKnown RBP0.03□□□□□ -2.4
CLK1-208ENST00000464454 CPS1P31327 1500 aa0.03□□□□□ -2.41
CLK1-208ENST00000464454 PKD1P98161 4303 aa0.02□□□□□ -2.41
CLK1-208ENST00000464454 AKAP13Q12802 2813 aa0.02□□□□□ -2.41
CLK1-208ENST00000464454 APC2O95996 2303 aa0.02□□□□□ -2.41
CLK1-208ENST00000464454 ADCY10Q96PN6 1610 aa0.02□□□□□ -2.41
CLK1-208ENST00000464454 MAP1BP46821 2468 aaKnown RBP0.02□□□□□ -2.41
CLK1-208ENST00000464454 HECTD1Q9ULT8 2610 aa0.01□□□□□ -2.41
CLK1-208ENST00000464454 LYSTQ99698 3801 aa0.01□□□□□ -2.41
CLK1-208ENST00000464454 KRTAP6-2Q3LI66 62 aa0.01□□□□□ -2.41
CLK1-208ENST00000464454 MINOS1Q5TGZ0 78 aa0.01□□□□□ -2.41
CLK1-208ENST00000464454 NCBP2-AS2Q69YL0 99 aa0.01□□□□□ -2.41
CLK1-208ENST00000464454 C6orf48Q9UBA6 75 aa0.01□□□□□ -2.41
CLK1-208ENST00000464454 AGLP35573 1532 aa0.01□□□□□ -2.41
CLK1-208ENST00000464454 MROH2AA6NES4 1674 aa0□□□□□ -2.41
CLK1-208ENST00000464454 C9orf92A6NGG3 77 aa0□□□□□ -2.41
CLK1-208ENST00000464454 MT1AP04731 61 aa0□□□□□ -2.41
CLK1-208ENST00000464454 COL6A3P12111 3177 aa-0□□□□□ -2.41
CLK1-208ENST00000464454 PKHD1P08F94 4074 aa-0.01□□□□□ -2.41
CLK1-208ENST00000464454 TNRC18O15417 2968 aaPredicted RBP-0.01□□□□□ -2.41
CLK1-208ENST00000464454 UGGT1Q9NYU2 1555 aa-0.02□□□□□ -2.41
CLK1-208ENST00000464454 SYCP2Q9BX26 1530 aa-0.02□□□□□ -2.41
CLK1-208ENST00000464454 FANCD2Q9BXW9 1451 aa-0.02□□□□□ -2.41
CLK1-208ENST00000464454 H0YGG7 62 aa-0.02□□□□□ -2.41
CLK1-208ENST00000464454 H0YGX0 51 aa-0.02□□□□□ -2.41
CLK1-208ENST00000464454 SPRR2EP22531 72 aa-0.02□□□□□ -2.41
CLK1-208ENST00000464454 CROCC2H7BZ55 1655 aa-0.02□□□□□ -2.41
CLK1-208ENST00000464454 FLNBO75369 2602 aaKnown RBP-0.02□□□□□ -2.41
CLK1-208ENST00000464454 STAB1Q9NY15 2570 aa-0.03□□□□□ -2.41
CLK1-208ENST00000464454 FCER1GP30273 86 aa-0.03□□□□□ -2.41
CLK1-208ENST00000464454 TMEM167BQ9NRX6 74 aa-0.03□□□□□ -2.41
CLK1-208ENST00000464454 DCHS2Q6V1P9 2916 aa-0.03□□□□□ -2.41
CLK1-208ENST00000464454 SONP18583 2426 aaKnown RBP-0.03□□□□□ -2.41
CLK1-208ENST00000464454 FLNCQ14315 2725 aa-0.03□□□□□ -2.41
CLK1-208ENST00000464454 VPS13BQ7Z7G8 4022 aa-0.04□□□□□ -2.42
CLK1-208ENST00000464454 NSD1Q96L73 2696 aaPredicted RBP-0.04□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms