RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 C6orf99Q4VX62 202 aa8.7□□□□□ -1.02
COL7A1-204ENST00000462475 HIST1H4GQ99525 98 aa8.7□□□□□ -1.02
COL7A1-204ENST00000462475 CEND1Q8N111 149 aa8.69□□□□□ -1.02
COL7A1-204ENST00000462475 DEFB105AQ8NG35 78 aa8.69□□□□□ -1.02
COL7A1-204ENST00000462475 H7C2G1 150 aa8.68□□□□□ -1.02
COL7A1-204ENST00000462475 COL5A1-AS1Q5SY13 56 aa8.68□□□□□ -1.02
COL7A1-204ENST00000462475 CD164Q04900 197 aa8.67□□□□□ -1.02
COL7A1-204ENST00000462475 TEX49A0A1B0GTD5 131 aa8.65□□□□□ -1.02
COL7A1-204ENST00000462475 A6NDN8 102 aa8.65□□□□□ -1.02
COL7A1-204ENST00000462475 CFC1BP0CG36 223 aa8.65□□□□□ -1.02
COL7A1-204ENST00000462475 Q6ZVH6 145 aa8.65□□□□□ -1.02
COL7A1-204ENST00000462475 SMIM29Q86T20 159 aa8.65□□□□□ -1.02
COL7A1-204ENST00000462475 FXYD2P54710 66 aa8.64□□□□□ -1.03
COL7A1-204ENST00000462475 A0A0G2JQZ4 141 aa8.63□□□□□ -1.03
COL7A1-204ENST00000462475 Q5XG85 94 aa8.63□□□□□ -1.03
COL7A1-204ENST00000462475 TMEM238LA0A1B0GVL6 79 aa8.62□□□□□ -1.03
COL7A1-204ENST00000462475 A6NJY4 79 aa8.62□□□□□ -1.03
COL7A1-204ENST00000462475 LORP23490 312 aaPredicted RBP8.62□□□□□ -1.03
COL7A1-204ENST00000462475 C1orf195Q5TG92 126 aa8.62□□□□□ -1.03
COL7A1-204ENST00000462475 FLGP20930 4061 aaPredicted RBP8.62□□□□□ -1.03
COL7A1-204ENST00000462475 TRBV7-6A0A0J9YX20 115 aa8.61□□□□□ -1.03
COL7A1-204ENST00000462475 KRTAP10-6P60371 365 aaPredicted RBP8.61□□□□□ -1.03
COL7A1-204ENST00000462475 IGLV5-48A0A075B6I7 105 aa8.6□□□□□ -1.03
COL7A1-204ENST00000462475 IFITM1P13164 125 aa8.6□□□□□ -1.03
COL7A1-204ENST00000462475 MUSTN1Q8IVN3 82 aa8.6□□□□□ -1.03
COL7A1-204ENST00000462475 A0A1B0GWB2 263 aa8.59□□□□□ -1.03
COL7A1-204ENST00000462475 RPL37P61927 97 aaKnown RBP8.59□□□□□ -1.03
COL7A1-204ENST00000462475 NHP2Q9NX24 153 aaKnown RBP8.59□□□□□ -1.03
COL7A1-204ENST00000462475 TAX1BP3O14907 124 aa8.58□□□□□ -1.04
COL7A1-204ENST00000462475 COPS9Q8WXC6 57 aa8.58□□□□□ -1.04
COL7A1-204ENST00000462475 A0A1B0GV90 55 aa8.57□□□□□ -1.04
COL7A1-204ENST00000462475 A4D1N5 150 aa8.56□□□□□ -1.04
COL7A1-204ENST00000462475 C9orf118A6NHY6 69 aa8.54□□□□□ -1.04
COL7A1-204ENST00000462475 K7ERJ3 54 aa8.54□□□□□ -1.04
COL7A1-204ENST00000462475 M0R2T5 61 aa8.54□□□□□ -1.04
COL7A1-204ENST00000462475 RAB37Q96AX2 223 aa8.54□□□□□ -1.04
COL7A1-204ENST00000462475 CFC1P0CG37 223 aa8.53□□□□□ -1.04
COL7A1-204ENST00000462475 COX6B2Q6YFQ2 88 aa8.53□□□□□ -1.04
COL7A1-204ENST00000462475 A0A0B4J2C4 111 aa8.52□□□□□ -1.05
COL7A1-204ENST00000462475 PRO1854Q9UHT4 67 aa8.51□□□□□ -1.05
COL7A1-204ENST00000462475 SMIM11BQ8TCY0 68 aa8.5□□□□□ -1.05
COL7A1-204ENST00000462475 H3BUT2 72 aa8.49□□□□□ -1.05
COL7A1-204ENST00000462475 TCL1BO95988 128 aa8.49□□□□□ -1.05
COL7A1-204ENST00000462475 TRAV13-2A0A0B4J235 113 aa8.48□□□□□ -1.05
COL7A1-204ENST00000462475 A0A1W2PPM0 123 aa8.46□□□□□ -1.06
COL7A1-204ENST00000462475 VAMP3Q15836 100 aa8.46□□□□□ -1.06
COL7A1-204ENST00000462475 NAA38Q9BRA0 125 aaKnown RBP8.46□□□□□ -1.06
COL7A1-204ENST00000462475 F8WEM9 126 aa8.45□□□□□ -1.06
COL7A1-204ENST00000462475 FABP2P12104 132 aa8.44□□□□□ -1.06
COL7A1-204ENST00000462475 LINC00575Q6W349 94 aa8.42□□□□□ -1.06
COL7A1-204ENST00000462475 TRBV7-7A0A0K0K1E9 115 aa8.41□□□□□ -1.06
COL7A1-204ENST00000462475 UBE2V1Q13404 147 aa8.41□□□□□ -1.06
COL7A1-204ENST00000462475 LYRM7Q5U5X0 104 aa8.41□□□□□ -1.06
COL7A1-204ENST00000462475 Q6ZQY7 126 aa8.41□□□□□ -1.06
COL7A1-204ENST00000462475 GTF2H5Q6ZYL4 71 aa8.41□□□□□ -1.06
COL7A1-204ENST00000462475 CLEC2BQ92478 149 aa8.41□□□□□ -1.06
COL7A1-204ENST00000462475 SPCS1Q9Y6A9 102 aa8.41□□□□□ -1.06
COL7A1-204ENST00000462475 K7EP34 96 aa8.4□□□□□ -1.06
COL7A1-204ENST00000462475 PSMB2P49721 201 aa8.4□□□□□ -1.06
COL7A1-204ENST00000462475 Q6JHZ5 121 aa8.4□□□□□ -1.06
COL7A1-204ENST00000462475 IGFL1Q6UW32 110 aa8.4□□□□□ -1.06
COL7A1-204ENST00000462475 OBSCN-AS1Q96MR7 158 aa8.39□□□□□ -1.07
COL7A1-204ENST00000462475 hADV29S1A0JD25 119 aa8.38□□□□□ -1.07
COL7A1-204ENST00000462475 SCGB1C2P0DMR2 95 aa8.38□□□□□ -1.07
COL7A1-204ENST00000462475 Q75L30 129 aa8.37□□□□□ -1.07
COL7A1-204ENST00000462475 COX6CP09669 75 aa8.36□□□□□ -1.07
COL7A1-204ENST00000462475 OCIAD2Q56VL3 154 aa8.36□□□□□ -1.07
COL7A1-204ENST00000462475 Q6Q795 121 aa8.36□□□□□ -1.07
COL7A1-204ENST00000462475 TRBV20-1A0A075B6N2 111 aa8.35□□□□□ -1.07
COL7A1-204ENST00000462475 TRIAP1O43715 76 aa8.35□□□□□ -1.07
COL7A1-204ENST00000462475 ATP11AUNQ6ZP68 121 aa8.35□□□□□ -1.07
COL7A1-204ENST00000462475 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.31□□□□□ -1.08
COL7A1-204ENST00000462475 ATXN8Q156A1 80 aa8.3□□□□□ -1.08
COL7A1-204ENST00000462475 H3BMG7 143 aa8.29□□□□□ -1.08
COL7A1-204ENST00000462475 LST1O00453 97 aa8.29□□□□□ -1.08
COL7A1-204ENST00000462475 H0YGX0 51 aa8.28□□□□□ -1.08
COL7A1-204ENST00000462475 PPDPFLQ8WWR9 84 aa8.28□□□□□ -1.08
COL7A1-204ENST00000462475 Q96NJ1 140 aa8.28□□□□□ -1.08
COL7A1-204ENST00000462475 USH2AO75445 5202 aa8.28□□□□□ -1.08
COL7A1-204ENST00000462475 F8W1H4 67 aa8.27□□□□□ -1.09
COL7A1-204ENST00000462475 SSPOA2VEC9 5147 aa8.26□□□□□ -1.09
COL7A1-204ENST00000462475 C20orf166-AS1Q96NR2 134 aa8.25□□□□□ -1.09
COL7A1-204ENST00000462475 KRTAP9-8Q9BYQ0 159 aa8.23□□□□□ -1.09
COL7A1-204ENST00000462475 SS18L2Q9UHA2 77 aa8.23□□□□□ -1.09
COL7A1-204ENST00000462475 PRO0461Q9UI25 63 aa8.23□□□□□ -1.09
COL7A1-204ENST00000462475 A8MUU9 505 aa8.22□□□□□ -1.09
COL7A1-204ENST00000462475 TRACP01848 142 aa8.22□□□□□ -1.09
COL7A1-204ENST00000462475 C9JAW5 83 aa8.21□□□□□ -1.1
COL7A1-204ENST00000462475 FAM218AQ96MZ4 157 aa8.21□□□□□ -1.1
COL7A1-204ENST00000462475 A0A1B0GX51 115 aa8.2□□□□□ -1.1
COL7A1-204ENST00000462475 MTURNQ8N3F0 131 aa8.2□□□□□ -1.1
COL7A1-204ENST00000462475 SMCPP49901 116 aaPredicted RBP8.19□□□□□ -1.1
COL7A1-204ENST00000462475 A0A087WSZ3 146 aa8.18□□□□□ -1.1
COL7A1-204ENST00000462475 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.18□□□□□ -1.1
COL7A1-204ENST00000462475 H3BT86 120 aa8.18□□□□□ -1.1
COL7A1-204ENST00000462475 TEN1Q86WV5 123 aa8.18□□□□□ -1.1
COL7A1-204ENST00000462475 SNCGO76070 127 aa8.17□□□□□ -1.1
COL7A1-204ENST00000462475 DNAL4O96015 105 aa8.17□□□□□ -1.1
COL7A1-204ENST00000462475 ANKRD29Q8N6D5 301 aa8.17□□□□□ -1.1
COL7A1-204ENST00000462475 NDUFV3P56181 108 aaKnown RBP8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms