RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 LINC00612Q8N6U2 182 aa5.64□□□□□ -1.51
NIPBL-202ENST00000448238 FP248Q71RG6 208 aaPredicted RBP5.63□□□□□ -1.51
NIPBL-202ENST00000448238 SPATA8Q6RVD6 105 aa5.63□□□□□ -1.51
NIPBL-202ENST00000448238 GCN1Q92616 2671 aaKnown RBP5.63□□□□□ -1.51
NIPBL-202ENST00000448238 FLNAP21333 2647 aaKnown RBP5.62□□□□□ -1.51
NIPBL-202ENST00000448238 TEX15Q9BXT5 2789 aa5.61□□□□□ -1.51
NIPBL-202ENST00000448238 CENPFP49454 3210 aa5.61□□□□□ -1.51
NIPBL-202ENST00000448238 C10orf142B7Z368 130 aa5.59□□□□□ -1.51
NIPBL-202ENST00000448238 NDUFAF8A1L188 74 aa5.59□□□□□ -1.51
NIPBL-202ENST00000448238 ITPR2Q14571 2701 aa5.58□□□□□ -1.52
NIPBL-202ENST00000448238 Q5W150 140 aa5.57□□□□□ -1.52
NIPBL-202ENST00000448238 Q8NDZ9 215 aa5.56□□□□□ -1.52
NIPBL-202ENST00000448238 MMP24-AS1A0A0U1RRL7 71 aa5.55□□□□□ -1.52
NIPBL-202ENST00000448238 KRTAP25-1Q3LHN0 102 aa5.55□□□□□ -1.52
NIPBL-202ENST00000448238 GIG44P09565 113 aaPredicted RBP5.54□□□□□ -1.52
NIPBL-202ENST00000448238 A0A1W2PPR1 153 aa5.54□□□□□ -1.52
NIPBL-202ENST00000448238 KLK9Q2XQG4 91 aa5.53□□□□□ -1.52
NIPBL-202ENST00000448238 KRTAP24-1Q3LI83 254 aa5.52□□□□□ -1.53
NIPBL-202ENST00000448238 ADM2Q7Z4H4 148 aa5.49□□□□□ -1.53
NIPBL-202ENST00000448238 SETXQ7Z333 2677 aaKnown RBP5.49□□□□□ -1.53
NIPBL-202ENST00000448238 K7EIL1 84 aa5.49□□□□□ -1.53
NIPBL-202ENST00000448238 KMT2BQ9UMN6 2715 aaPredicted RBP5.48□□□□□ -1.53
NIPBL-202ENST00000448238 PANO1I0J062 215 aa5.48□□□□□ -1.53
NIPBL-202ENST00000448238 UTP20O75691 2785 aaKnown RBP5.48□□□□□ -1.53
NIPBL-202ENST00000448238 Q6ZR54 194 aa5.47□□□□□ -1.53
NIPBL-202ENST00000448238 LINC00472Q9H8W2 130 aa5.46□□□□□ -1.53
NIPBL-202ENST00000448238 COL4A2P08572 1712 aa5.45□□□□□ -1.54
NIPBL-202ENST00000448238 PP632Q6XCG6 107 aa5.44□□□□□ -1.54
NIPBL-202ENST00000448238 A0A087X002 238 aa5.43□□□□□ -1.54
NIPBL-202ENST00000448238 TNP1P09430 55 aa5.42□□□□□ -1.54
NIPBL-202ENST00000448238 PLAC8Q9NZF1 115 aa5.4□□□□□ -1.54
NIPBL-202ENST00000448238 KRTAP10-11P60412 298 aa5.4□□□□□ -1.55
NIPBL-202ENST00000448238 C10orf95Q9H7T3 257 aa5.39□□□□□ -1.55
NIPBL-202ENST00000448238 SPRR1BP22528 89 aa5.39□□□□□ -1.55
NIPBL-202ENST00000448238 SPRR1AP35321 89 aa5.37□□□□□ -1.55
NIPBL-202ENST00000448238 A6NN06 94 aa5.36□□□□□ -1.55
NIPBL-202ENST00000448238 APCP25054 2843 aa5.36□□□□□ -1.55
NIPBL-202ENST00000448238 OXTP01178 125 aa5.36□□□□□ -1.55
NIPBL-202ENST00000448238 CYSTM1Q9H1C7 97 aa5.35□□□□□ -1.55
NIPBL-202ENST00000448238 CASC10Q5T4H9 136 aa5.34□□□□□ -1.55
NIPBL-202ENST00000448238 A8MUU9 505 aa5.34□□□□□ -1.55
NIPBL-202ENST00000448238 A0A096LNT2 108 aa5.34□□□□□ -1.55
NIPBL-202ENST00000448238 P0C880 135 aa5.33□□□□□ -1.56
NIPBL-202ENST00000448238 ZNF292O60281 2723 aa5.32□□□□□ -1.56
NIPBL-202ENST00000448238 CEP350Q5VT06 3117 aa5.32□□□□□ -1.56
NIPBL-202ENST00000448238 Q5VSD8 79 aa5.32□□□□□ -1.56
NIPBL-202ENST00000448238 KRTAP26-1Q6PEX3 210 aa5.29□□□□□ -1.56
NIPBL-202ENST00000448238 UBR5O95071 2799 aaPredicted RBP5.27□□□□□ -1.57
NIPBL-202ENST00000448238 MAP1AP78559 2803 aaPredicted RBP5.26□□□□□ -1.57
NIPBL-202ENST00000448238 SRCAPQ6ZRS2 3230 aa5.25□□□□□ -1.57
NIPBL-202ENST00000448238 KRTAP11-1Q8IUC1 163 aa5.23□□□□□ -1.57
NIPBL-202ENST00000448238 TENM3Q9P273 2699 aa5.21□□□□□ -1.58
NIPBL-202ENST00000448238 ITPR1Q14643 2758 aa5.2□□□□□ -1.58
NIPBL-202ENST00000448238 RPS29P62273 56 aaKnown RBP5.2□□□□□ -1.58
NIPBL-202ENST00000448238 A8MU10 97 aa5.18□□□□□ -1.58
NIPBL-202ENST00000448238 KRTAP29-1A8MX34 341 aaPredicted RBP5.18□□□□□ -1.58
NIPBL-202ENST00000448238 CHD9Q3L8U1 2897 aa5.18□□□□□ -1.58
NIPBL-202ENST00000448238 NBEAL2Q6ZNJ1 2754 aa5.15□□□□□ -1.58
NIPBL-202ENST00000448238 KRTAP4-16G5E9R7 235 aaPredicted RBP5.13□□□□□ -1.59
NIPBL-202ENST00000448238 PCNTO95613 3336 aa5.12□□□□□ -1.59
NIPBL-202ENST00000448238 A0A0C4DFX4 3053 aa5.11□□□□□ -1.59
NIPBL-202ENST00000448238 KRTAP10-3P60369 221 aa5.1□□□□□ -1.59
NIPBL-202ENST00000448238 TRIOO75962 3097 aa5.1□□□□□ -1.59
NIPBL-202ENST00000448238 DSPP15924 2871 aaKnown RBP5.1□□□□□ -1.59
NIPBL-202ENST00000448238 PRO2289Q9P1D8 64 aa5.08□□□□□ -1.6
NIPBL-202ENST00000448238 TRANK1O15050 2925 aa5.08□□□□□ -1.6
NIPBL-202ENST00000448238 LRBAP50851 2863 aa5.05□□□□□ -1.6
NIPBL-202ENST00000448238 LCE6AA0A183 80 aa5.05□□□□□ -1.6
NIPBL-202ENST00000448238 KRTAP10-8P60410 259 aa5.05□□□□□ -1.6
NIPBL-202ENST00000448238 NOTCH2NLQ7Z3S9 236 aa5.05□□□□□ -1.6
NIPBL-202ENST00000448238 C5orf42Q9H799 3197 aa5.05□□□□□ -1.6
NIPBL-202ENST00000448238 DNAH12Q6ZR08 3092 aa5.04□□□□□ -1.6
NIPBL-202ENST00000448238 CFAP54Q96N23 3096 aa5.03□□□□□ -1.6
NIPBL-202ENST00000448238 LAMA2P24043 3122 aaKnown RBP5.03□□□□□ -1.6
NIPBL-202ENST00000448238 KALRNO60229 2985 aa5.01□□□□□ -1.61
NIPBL-202ENST00000448238 FLNCQ14315 2725 aa5.01□□□□□ -1.61
NIPBL-202ENST00000448238 EP400Q96L91 3159 aa5.01□□□□□ -1.61
NIPBL-202ENST00000448238 KRTAP10-1P60331 282 aa4.99□□□□□ -1.61
NIPBL-202ENST00000448238 TENM1Q9UKZ4 2725 aa4.98□□□□□ -1.61
NIPBL-202ENST00000448238 PDZD2O15018 2839 aa4.96□□□□□ -1.62
NIPBL-202ENST00000448238 NF1P21359 2839 aa4.96□□□□□ -1.62
NIPBL-202ENST00000448238 Q6ZRN7 208 aaPredicted RBP4.94□□□□□ -1.62
NIPBL-202ENST00000448238 CELSR2Q9HCU4 2923 aa4.93□□□□□ -1.62
NIPBL-202ENST00000448238 FRYLO94915 3013 aa4.92□□□□□ -1.62
NIPBL-202ENST00000448238 HIVEP1P15822 2718 aa4.91□□□□□ -1.62
NIPBL-202ENST00000448238 FRYQ5TBA9 3013 aa4.91□□□□□ -1.62
NIPBL-202ENST00000448238 KRTAP10-2P60368 255 aa4.9□□□□□ -1.62
NIPBL-202ENST00000448238 ASH1LQ9NR48 2969 aaKnown RBP4.9□□□□□ -1.63
NIPBL-202ENST00000448238 KRTAP1-5Q9BYS1 174 aa4.89□□□□□ -1.63
NIPBL-202ENST00000448238 TGP01266 2768 aa4.86□□□□□ -1.63
NIPBL-202ENST00000448238 KRTAP1-3Q8IUG1 177 aa4.84□□□□□ -1.63
NIPBL-202ENST00000448238 GOLGB1Q14789 3259 aaKnown RBP4.84□□□□□ -1.63
NIPBL-202ENST00000448238 KRTAP1-1Q07627 177 aa4.83□□□□□ -1.64
NIPBL-202ENST00000448238 SRRM2Q9UQ35 2752 aaKnown RBP4.83□□□□□ -1.64
NIPBL-202ENST00000448238 NIPBLQ6KC79 2804 aaeCLIP4.82□□□□□ -1.646e-7■■□□□ 12.1
NIPBL-202ENST00000448238 H0YAA0 97 aa4.82□□□□□ -1.64
NIPBL-202ENST00000448238 CRYBG3Q68DQ2 2970 aa4.81□□□□□ -1.64
NIPBL-202ENST00000448238 CHD7Q9P2D1 2997 aa4.81□□□□□ -1.64
NIPBL-202ENST00000448238 COL12A1Q99715 3063 aa4.81□□□□□ -1.64
NIPBL-202ENST00000448238 FREM2Q5SZK8 3169 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms