RNA–Protein interactions for RNA: ENST00000435607.3

SCN4A-201, Transcript of sodium voltage-gated channel alpha subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN4A, Length 7,805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4A-201ENST00000435607 MAST4O15021 2626 aa7.07□□□□□ -1.28
SCN4A-201ENST00000435607 H7BZZ5 65 aa7.06□□□□□ -1.28
SCN4A-201ENST00000435607 WDFY4Q6ZS81 3184 aa7.06□□□□□ -1.28
SCN4A-201ENST00000435607 TRIOO75962 3097 aa7.06□□□□□ -1.28
SCN4A-201ENST00000435607 SPEGQ15772 3267 aa7.05□□□□□ -1.28
SCN4A-201ENST00000435607 A0A096LNT2 108 aa7.04□□□□□ -1.28
SCN4A-201ENST00000435607 HECTD1Q9ULT8 2610 aa7.04□□□□□ -1.28
SCN4A-201ENST00000435607 PRRC2CQ9Y520 2896 aaKnown RBP7.04□□□□□ -1.28
SCN4A-201ENST00000435607 VPS13AQ96RL7 3174 aa7.03□□□□□ -1.28
SCN4A-201ENST00000435607 OXTP01178 125 aa7.02□□□□□ -1.29
SCN4A-201ENST00000435607 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.01□□□□□ -1.29
SCN4A-201ENST00000435607 ATRQ13535 2644 aa7.01□□□□□ -1.29
SCN4A-201ENST00000435607 LAMA1P25391 3075 aa7.01□□□□□ -1.29
SCN4A-201ENST00000435607 Q5VSD8 79 aa7□□□□□ -1.29
SCN4A-201ENST00000435607 STAB1Q9NY15 2570 aa7□□□□□ -1.29
SCN4A-201ENST00000435607 PLAC8Q9NZF1 115 aa7□□□□□ -1.29
SCN4A-201ENST00000435607 CFAP54Q96N23 3096 aa6.97□□□□□ -1.29
SCN4A-201ENST00000435607 SPINK7P58062 85 aa6.95□□□□□ -1.3
SCN4A-201ENST00000435607 EIF4EBP3O60516 100 aaPredicted RBP6.95□□□□□ -1.3
SCN4A-201ENST00000435607 H1FX-AS1Q4G0G2 97 aa6.95□□□□□ -1.3
SCN4A-201ENST00000435607 FP248Q71RG6 208 aaPredicted RBP6.92□□□□□ -1.3
SCN4A-201ENST00000435607 M0QZ58 72 aa6.91□□□□□ -1.3
SCN4A-201ENST00000435607 Q75L30 129 aa6.91□□□□□ -1.3
SCN4A-201ENST00000435607 KRTAP1-3Q8IUG1 177 aa6.91□□□□□ -1.3
SCN4A-201ENST00000435607 CFAP46Q8IYW2 2715 aa6.9□□□□□ -1.3
SCN4A-201ENST00000435607 LCE6AA0A183 80 aa6.9□□□□□ -1.3
SCN4A-201ENST00000435607 OCR1Q9BZK8 76 aa6.9□□□□□ -1.31
SCN4A-201ENST00000435607 KRTAP1-1Q07627 177 aa6.87□□□□□ -1.31
SCN4A-201ENST00000435607 RPL37P61927 97 aaKnown RBP6.86□□□□□ -1.31
SCN4A-201ENST00000435607 HELZ2Q9BYK8 2649 aaKnown RBP6.85□□□□□ -1.31
SCN4A-201ENST00000435607 WDFY3Q8IZQ1 3526 aa6.85□□□□□ -1.31
SCN4A-201ENST00000435607 WIPF1O43516 503 aa6.84□□□□□ -1.31
SCN4A-201ENST00000435607 Q5W150 140 aa6.84□□□□□ -1.31
SCN4A-201ENST00000435607 LINC01558Q9Y6Z2 57 aa6.83□□□□□ -1.32
SCN4A-201ENST00000435607 MMP24-AS1A0A0U1RRL7 71 aa6.83□□□□□ -1.32
SCN4A-201ENST00000435607 REV3LO60673 3130 aa6.83□□□□□ -1.32
SCN4A-201ENST00000435607 ROMO1P60602 79 aa6.83□□□□□ -1.32
SCN4A-201ENST00000435607 FLNAP21333 2647 aaKnown RBP6.82□□□□□ -1.32
SCN4A-201ENST00000435607 CHD9Q3L8U1 2897 aa6.82□□□□□ -1.32
SCN4A-201ENST00000435607 Q8N9P0 234 aaPredicted RBP6.82□□□□□ -1.32
SCN4A-201ENST00000435607 ITPR3Q14573 2671 aa6.81□□□□□ -1.32
SCN4A-201ENST00000435607 TRANK1O15050 2925 aa6.8□□□□□ -1.32
SCN4A-201ENST00000435607 DMBT1Q9UGM3 2413 aaPredicted RBP6.79□□□□□ -1.32
SCN4A-201ENST00000435607 FREM2Q5SZK8 3169 aa6.77□□□□□ -1.33
SCN4A-201ENST00000435607 NBEAL1Q6ZS30 2694 aa6.76□□□□□ -1.33
SCN4A-201ENST00000435607 ADM2Q7Z4H4 148 aa6.76□□□□□ -1.33
SCN4A-201ENST00000435607 SPRR1BP22528 89 aa6.76□□□□□ -1.33
SCN4A-201ENST00000435607 SPRR1AP35321 89 aa6.75□□□□□ -1.33
SCN4A-201ENST00000435607 LINC00472Q9H8W2 130 aa6.72□□□□□ -1.33
SCN4A-201ENST00000435607 KRTAP10-1P60331 282 aa6.72□□□□□ -1.33
SCN4A-201ENST00000435607 AKAP13Q12802 2813 aa6.71□□□□□ -1.34
SCN4A-201ENST00000435607 MGAQ8IWI9 3026 aa6.7□□□□□ -1.34
SCN4A-201ENST00000435607 FRYLO94915 3013 aa6.69□□□□□ -1.34
SCN4A-201ENST00000435607 TNRC18O15417 2968 aaPredicted RBP6.68□□□□□ -1.34
SCN4A-201ENST00000435607 DMDP11532 3685 aa6.66□□□□□ -1.34
SCN4A-201ENST00000435607 KRTAP10-2P60368 255 aa6.64□□□□□ -1.35
SCN4A-201ENST00000435607 PANO1I0J062 215 aa6.64□□□□□ -1.35
SCN4A-201ENST00000435607 STAB2Q8WWQ8 2551 aa6.64□□□□□ -1.35
SCN4A-201ENST00000435607 ASPMQ8IZT6 3477 aa6.63□□□□□ -1.35
SCN4A-201ENST00000435607 BOD1L1Q8NFC6 3051 aa6.63□□□□□ -1.35
SCN4A-201ENST00000435607 SETXQ7Z333 2677 aaKnown RBP6.62□□□□□ -1.35
SCN4A-201ENST00000435607 PRAC1Q96KF2 57 aa6.62□□□□□ -1.35
SCN4A-201ENST00000435607 TEX15Q9BXT5 2789 aa6.61□□□□□ -1.35
SCN4A-201ENST00000435607 C20orf166-AS1Q96NR2 134 aa6.6□□□□□ -1.35
SCN4A-201ENST00000435607 Q6ZR54 194 aa6.6□□□□□ -1.35
SCN4A-201ENST00000435607 KRTAP26-1Q6PEX3 210 aa6.59□□□□□ -1.35
SCN4A-201ENST00000435607 Q5VV11 94 aa6.59□□□□□ -1.36
SCN4A-201ENST00000435607 H3BS24 57 aa6.58□□□□□ -1.36
SCN4A-201ENST00000435607 UNC79Q9P2D8 2635 aa6.58□□□□□ -1.36
SCN4A-201ENST00000435607 A8MUU9 505 aa6.57□□□□□ -1.36
SCN4A-201ENST00000435607 RPS29P62273 56 aaKnown RBP6.57□□□□□ -1.36
SCN4A-201ENST00000435607 Q8NDZ9 215 aa6.57□□□□□ -1.36
SCN4A-201ENST00000435607 KRTAP1-5Q9BYS1 174 aa6.56□□□□□ -1.36
SCN4A-201ENST00000435607 ASB16-AS1Q495Z4 193 aa6.56□□□□□ -1.36
SCN4A-201ENST00000435607 MUC3AQ02505 3323 aa6.56□□□□□ -1.36
SCN4A-201ENST00000435607 CENPEQ02224 2701 aa6.55□□□□□ -1.36
SCN4A-201ENST00000435607 TEP1Q99973 2627 aaKnown RBP6.55□□□□□ -1.36
SCN4A-201ENST00000435607 CFAP47Q6ZTR5 3102 aa6.55□□□□□ -1.36
SCN4A-201ENST00000435607 SPATA8Q6RVD6 105 aa6.53□□□□□ -1.36
SCN4A-201ENST00000435607 LAMA5O15230 3695 aa6.52□□□□□ -1.37
SCN4A-201ENST00000435607 LOC400499M0QZD8 3231 aa6.52□□□□□ -1.37
SCN4A-201ENST00000435607 DMXL1Q9Y485 3027 aa6.5□□□□□ -1.37
SCN4A-201ENST00000435607 CHD6Q8TD26 2715 aa6.5□□□□□ -1.37
SCN4A-201ENST00000435607 TNP1P09430 55 aa6.5□□□□□ -1.37
SCN4A-201ENST00000435607 DSPP15924 2871 aaKnown RBP6.47□□□□□ -1.37
SCN4A-201ENST00000435607 KRTAP16-1A8MUX0 517 aa6.46□□□□□ -1.37
SCN4A-201ENST00000435607 A0A087X002 238 aa6.46□□□□□ -1.37
SCN4A-201ENST00000435607 COL12A1Q99715 3063 aa6.46□□□□□ -1.38
SCN4A-201ENST00000435607 FRYQ5TBA9 3013 aa6.46□□□□□ -1.38
SCN4A-201ENST00000435607 DMXL2Q8TDJ6 3036 aa6.45□□□□□ -1.38
SCN4A-201ENST00000435607 COL6A5A8TX70 2615 aa6.44□□□□□ -1.38
SCN4A-201ENST00000435607 ZFHX4Q86UP3 3567 aa6.44□□□□□ -1.38
SCN4A-201ENST00000435607 NOTCH1P46531 2555 aa6.44□□□□□ -1.38
SCN4A-201ENST00000435607 MAP1AP78559 2803 aaPredicted RBP6.43□□□□□ -1.38
SCN4A-201ENST00000435607 KMT2BQ9UMN6 2715 aaPredicted RBP6.41□□□□□ -1.38
SCN4A-201ENST00000435607 BAHCC1Q9P281 2608 aa6.41□□□□□ -1.38
SCN4A-201ENST00000435607 Q5XG85 94 aa6.39□□□□□ -1.39
SCN4A-201ENST00000435607 ADGRG4Q8IZF6 3080 aa6.38□□□□□ -1.39
SCN4A-201ENST00000435607 LRBAP50851 2863 aa6.37□□□□□ -1.39
SCN4A-201ENST00000435607 ATMQ13315 3056 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms