RNA–Protein interactions for RNA: ENST00000430321.5

UBR3-204, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 5

Gene UBR3, Length 5,411 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-204ENST00000430321 TPRXLQ17RH7 258 aa3.39□□□□□ -1.87
UBR3-204ENST00000430321 C20orf166-AS1Q96NR2 134 aa3.38□□□□□ -1.87
UBR3-204ENST00000430321 SPTBN4Q9H254 2564 aa3.37□□□□□ -1.87
UBR3-204ENST00000430321 A0A0A0MQY5 61 aa3.37□□□□□ -1.87
UBR3-204ENST00000430321 A0A087X002 238 aa3.36□□□□□ -1.87
UBR3-204ENST00000430321 KRTAP13-1Q8IUC0 172 aa3.36□□□□□ -1.87
UBR3-204ENST00000430321 KRTAP3-3Q9BYR6 98 aa3.35□□□□□ -1.87
UBR3-204ENST00000430321 KRTAP3-2Q9BYR7 98 aa3.35□□□□□ -1.87
UBR3-204ENST00000430321 A8MUU9 505 aa3.35□□□□□ -1.87
UBR3-204ENST00000430321 PRO2289Q9P1D8 64 aa3.35□□□□□ -1.87
UBR3-204ENST00000430321 USP9YO00507 2555 aaPredicted RBP3.34□□□□□ -1.87
UBR3-204ENST00000430321 Q8NDZ9 215 aa3.33□□□□□ -1.88
UBR3-204ENST00000430321 KRTAP13-2Q52LG2 175 aa3.31□□□□□ -1.88
UBR3-204ENST00000430321 EPG5Q9HCE0 2579 aa3.31□□□□□ -1.88
UBR3-204ENST00000430321 TNP1P09430 55 aa3.31□□□□□ -1.88
UBR3-204ENST00000430321 HELZ2Q9BYK8 2649 aaKnown RBP3.29□□□□□ -1.88
UBR3-204ENST00000430321 ACANP16112 2415 aa3.29□□□□□ -1.88
UBR3-204ENST00000430321 PP632Q6XCG6 107 aa3.29□□□□□ -1.88
UBR3-204ENST00000430321 H3BS24 57 aa3.27□□□□□ -1.89
UBR3-204ENST00000430321 KMT2BQ9UMN6 2715 aaPredicted RBP3.26□□□□□ -1.89
UBR3-204ENST00000430321 HECTD1Q9ULT8 2610 aa3.26□□□□□ -1.89
UBR3-204ENST00000430321 XP32Q5T750 250 aa3.24□□□□□ -1.89
UBR3-204ENST00000430321 POLQO75417 2590 aa3.23□□□□□ -1.89
UBR3-204ENST00000430321 LCE2DQ5TA82 110 aaPredicted RBP3.23□□□□□ -1.89
UBR3-204ENST00000430321 A0A1B0GVY2 172 aa3.23□□□□□ -1.89
UBR3-204ENST00000430321 Q5VV11 94 aa3.22□□□□□ -1.89
UBR3-204ENST00000430321 SPATA8Q6RVD6 105 aa3.22□□□□□ -1.89
UBR3-204ENST00000430321 FLNAP21333 2647 aaKnown RBP3.22□□□□□ -1.89
UBR3-204ENST00000430321 ITPR3Q14573 2671 aa3.19□□□□□ -1.9
UBR3-204ENST00000430321 KRTAP1-4P0C5Y4 121 aa3.19□□□□□ -1.9
UBR3-204ENST00000430321 KRTAP7-1Q8IUC3 87 aa3.18□□□□□ -1.9
UBR3-204ENST00000430321 KRTAP11-1Q8IUC1 163 aa3.18□□□□□ -1.9
UBR3-204ENST00000430321 KRTAP13-3Q3SY46 172 aa3.18□□□□□ -1.9
UBR3-204ENST00000430321 FLNBO75369 2602 aaKnown RBP3.17□□□□□ -1.9
UBR3-204ENST00000430321 KRTAP25-1Q3LHN0 102 aa3.17□□□□□ -1.9
UBR3-204ENST00000430321 KRTAP10-10P60014 251 aa3.17□□□□□ -1.9
UBR3-204ENST00000430321 KRTAP10-8P60410 259 aa3.16□□□□□ -1.9
UBR3-204ENST00000430321 USP24Q9UPU5 2620 aa3.15□□□□□ -1.9
UBR3-204ENST00000430321 BAHCC1Q9P281 2608 aa3.15□□□□□ -1.91
UBR3-204ENST00000430321 MGAM2Q2M2H8 2515 aa3.13□□□□□ -1.91
UBR3-204ENST00000430321 SETD2Q9BYW2 2564 aaPredicted RBP3.11□□□□□ -1.91
UBR3-204ENST00000430321 MAST4O15021 2626 aa3.1□□□□□ -1.91
UBR3-204ENST00000430321 ATRQ13535 2644 aa3.08□□□□□ -1.92
UBR3-204ENST00000430321 H0YAA0 97 aa3.07□□□□□ -1.92
UBR3-204ENST00000430321 EP400Q96L91 3159 aa3.07□□□□□ -1.92
UBR3-204ENST00000430321 UNC79Q9P2D8 2635 aa3.05□□□□□ -1.92
UBR3-204ENST00000430321 CFAP46Q8IYW2 2715 aa3.04□□□□□ -1.92
UBR3-204ENST00000430321 KRTAP16-1A8MUX0 517 aa3.03□□□□□ -1.92
UBR3-204ENST00000430321 STAB1Q9NY15 2570 aa3.01□□□□□ -1.93
UBR3-204ENST00000430321 PRAC1Q96KF2 57 aa3□□□□□ -1.93
UBR3-204ENST00000430321 A8MU10 97 aa2.99□□□□□ -1.93
UBR3-204ENST00000430321 A6NN06 94 aa2.97□□□□□ -1.93
UBR3-204ENST00000430321 NSD1Q96L73 2696 aaPredicted RBP2.97□□□□□ -1.93
UBR3-204ENST00000430321 C10orf95Q9H7T3 257 aa2.97□□□□□ -1.93
UBR3-204ENST00000430321 TEP1Q99973 2627 aaKnown RBP2.97□□□□□ -1.93
UBR3-204ENST00000430321 ZNF292O60281 2723 aa2.96□□□□□ -1.94
UBR3-204ENST00000430321 P0C880 135 aa2.96□□□□□ -1.94
UBR3-204ENST00000430321 IGSF10Q6WRI0 2623 aa2.94□□□□□ -1.94
UBR3-204ENST00000430321 CYSTM1Q9H1C7 97 aa2.94□□□□□ -1.94
UBR3-204ENST00000430321 COL6A5A8TX70 2615 aa2.93□□□□□ -1.94
UBR3-204ENST00000430321 ITPR2Q14571 2701 aa2.92□□□□□ -1.94
UBR3-204ENST00000430321 WDR87Q6ZQQ6 2873 aa2.89□□□□□ -1.95
UBR3-204ENST00000430321 KRTAP13-4Q3LI77 160 aa2.88□□□□□ -1.95
UBR3-204ENST00000430321 GCN1Q92616 2671 aaKnown RBP2.88□□□□□ -1.95
UBR3-204ENST00000430321 DMBT1Q9UGM3 2413 aaPredicted RBP2.85□□□□□ -1.95
UBR3-204ENST00000430321 MAP1AP78559 2803 aaPredicted RBP2.85□□□□□ -1.95
UBR3-204ENST00000430321 NBEAL1Q6ZS30 2694 aa2.85□□□□□ -1.95
UBR3-204ENST00000430321 LCE2BO14633 110 aa2.85□□□□□ -1.95
UBR3-204ENST00000430321 TEX15Q9BXT5 2789 aa2.84□□□□□ -1.95
UBR3-204ENST00000430321 SETXQ7Z333 2677 aaKnown RBP2.82□□□□□ -1.96
UBR3-204ENST00000430321 MT1HL1P0DM35 61 aa2.8□□□□□ -1.96
UBR3-204ENST00000430321 CENPEQ02224 2701 aa2.8□□□□□ -1.96
UBR3-204ENST00000430321 FLG2Q5D862 2391 aaPredicted RBP2.8□□□□□ -1.96
UBR3-204ENST00000430321 LCE2CQ5TA81 110 aa2.79□□□□□ -1.96
UBR3-204ENST00000430321 UBR5O95071 2799 aaPredicted RBP2.78□□□□□ -1.96
UBR3-204ENST00000430321 HUWE1Q7Z6Z7 4374 aaKnown RBP2.78□□□□□ -1.96
UBR3-204ENST00000430321 HIVEP1P15822 2718 aa2.77□□□□□ -1.97
UBR3-204ENST00000430321 KRTAP23-1A1A580 65 aa2.77□□□□□ -1.97
UBR3-204ENST00000430321 ALMS1Q8TCU4 4167 aa2.76□□□□□ -1.97
UBR3-204ENST00000430321 NDUFAF8A1L188 74 aa2.75□□□□□ -1.97
UBR3-204ENST00000430321 KRTAP15-1Q3LI76 137 aa2.75□□□□□ -1.97
UBR3-204ENST00000430321 CHD9Q3L8U1 2897 aa2.74□□□□□ -1.97
UBR3-204ENST00000430321 TRANK1O15050 2925 aa2.74□□□□□ -1.97
UBR3-204ENST00000430321 TENM4Q6N022 2769 aa2.73□□□□□ -1.97
UBR3-204ENST00000430321 AKAP13Q12802 2813 aa2.72□□□□□ -1.97
UBR3-204ENST00000430321 NOTCH1P46531 2555 aa2.72□□□□□ -1.97
UBR3-204ENST00000430321 STAB2Q8WWQ8 2551 aa2.72□□□□□ -1.97
UBR3-204ENST00000430321 BPTFQ12830 3046 aa2.72□□□□□ -1.97
UBR3-204ENST00000430321 KRTAP12-2P59991 146 aa2.71□□□□□ -1.97
UBR3-204ENST00000430321 CHD6Q8TD26 2715 aa2.71□□□□□ -1.98
UBR3-204ENST00000430321 KRTAP12-1P59990 96 aa2.71□□□□□ -1.98
UBR3-204ENST00000430321 KRTAP10-12P60413 245 aa2.7□□□□□ -1.98
UBR3-204ENST00000430321 KRTAP10-4P60372 401 aaPredicted RBP2.69□□□□□ -1.98
UBR3-204ENST00000430321 KRTAP19-4Q3LI73 84 aa2.68□□□□□ -1.98
UBR3-204ENST00000430321 LCE2AQ5TA79 106 aaPredicted RBP2.65□□□□□ -1.98
UBR3-204ENST00000430321 LAMA1P25391 3075 aa2.64□□□□□ -1.99
UBR3-204ENST00000430321 CENPFP49454 3210 aa2.64□□□□□ -1.99
UBR3-204ENST00000430321 APCP25054 2843 aa2.63□□□□□ -1.99
UBR3-204ENST00000430321 KRTAP3-1Q9BYR8 98 aa2.63□□□□□ -1.99
UBR3-204ENST00000430321 INE1O15225 51 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms