RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ZNF861PO60384 105 aa8.3□□□□□ -1.08
PTCH1-207ENST00000429896 MUC3AQ02505 3323 aa8.3□□□□□ -1.08
PTCH1-207ENST00000429896 TRBV7-4A0A0J9YYF1 115 aa8.29□□□□□ -1.08
PTCH1-207ENST00000429896 MAP1AP78559 2803 aaPredicted RBP8.29□□□□□ -1.08
PTCH1-207ENST00000429896 LOC400499M0QZD8 3231 aa8.28□□□□□ -1.08
PTCH1-207ENST00000429896 IGLV7-43P04211 117 aa8.28□□□□□ -1.08
PTCH1-207ENST00000429896 KRTAP1-5Q9BYS1 174 aa8.27□□□□□ -1.08
PTCH1-207ENST00000429896 LOC110117498A0A087WWA1 95 aa8.27□□□□□ -1.09
PTCH1-207ENST00000429896 LINC01600Q96MT4 127 aa8.27□□□□□ -1.09
PTCH1-207ENST00000429896 PSORS1C2Q9UIG4 136 aa8.27□□□□□ -1.09
PTCH1-207ENST00000429896 A0A0D9SG42 100 aa8.25□□□□□ -1.09
PTCH1-207ENST00000429896 FAM104AQ969W3 186 aa8.25□□□□□ -1.09
PTCH1-207ENST00000429896 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.23□□□□□ -1.09
PTCH1-207ENST00000429896 COA5Q86WW8 74 aa8.23□□□□□ -1.09
PTCH1-207ENST00000429896 MRPL34Q9BQ48 92 aaKnown RBP8.23□□□□□ -1.09
PTCH1-207ENST00000429896 C8orf87E5RJ46 101 aa8.23□□□□□ -1.09
PTCH1-207ENST00000429896 LINC00304Q8N9R0 145 aa8.22□□□□□ -1.09
PTCH1-207ENST00000429896 IGLV5-37A0A075B6J1 123 aa8.22□□□□□ -1.09
PTCH1-207ENST00000429896 A8MWP4 228 aa8.22□□□□□ -1.09
PTCH1-207ENST00000429896 HRNRQ86YZ3 2850 aaPredicted RBP8.22□□□□□ -1.09
PTCH1-207ENST00000429896 NSD1Q96L73 2696 aaPredicted RBP8.21□□□□□ -1.09
PTCH1-207ENST00000429896 ZZEF1O43149 2961 aa8.21□□□□□ -1.09
PTCH1-207ENST00000429896 A8MUN3 132 aa8.2□□□□□ -1.1
PTCH1-207ENST00000429896 PRO0628Q9UI54 55 aa8.2□□□□□ -1.1
PTCH1-207ENST00000429896 IGFL1Q6UW32 110 aa8.2□□□□□ -1.1
PTCH1-207ENST00000429896 Q6ZR54 194 aa8.19□□□□□ -1.1
PTCH1-207ENST00000429896 A0A1B0GW54 56 aa8.18□□□□□ -1.1
PTCH1-207ENST00000429896 DCHS1Q96JQ0 3298 aa8.17□□□□□ -1.1
PTCH1-207ENST00000429896 PLAC8Q9NZF1 115 aa8.16□□□□□ -1.1
PTCH1-207ENST00000429896 Q8N1X5 172 aa8.16□□□□□ -1.1
PTCH1-207ENST00000429896 LOC101927531A0A1B0GV80 90 aa8.15□□□□□ -1.11
PTCH1-207ENST00000429896 TENM4Q6N022 2769 aa8.14□□□□□ -1.11
PTCH1-207ENST00000429896 TACC2O95359 2948 aa8.14□□□□□ -1.11
PTCH1-207ENST00000429896 KRTAP26-1Q6PEX3 210 aa8.14□□□□□ -1.11
PTCH1-207ENST00000429896 C8orf17Q9NRJ1 99 aa8.13□□□□□ -1.11
PTCH1-207ENST00000429896 KRTAP10-2P60368 255 aa8.13□□□□□ -1.11
PTCH1-207ENST00000429896 SPRR4Q96PI1 79 aa8.13□□□□□ -1.11
PTCH1-207ENST00000429896 CRIPTQ9P021 101 aa8.13□□□□□ -1.11
PTCH1-207ENST00000429896 NOTCH1P46531 2555 aa8.12□□□□□ -1.11
PTCH1-207ENST00000429896 CFAP47Q6ZTR5 3102 aa8.11□□□□□ -1.11
PTCH1-207ENST00000429896 H3BPC8 53 aa8.11□□□□□ -1.11
PTCH1-207ENST00000429896 RPS28P62857 69 aaKnown RBP8.11□□□□□ -1.11
PTCH1-207ENST00000429896 FBN2P35556 2912 aa8.11□□□□□ -1.11
PTCH1-207ENST00000429896 CELSR2Q9HCU4 2923 aa8.1□□□□□ -1.11
PTCH1-207ENST00000429896 KRTAP10-1P60331 282 aa8.1□□□□□ -1.11
PTCH1-207ENST00000429896 MIR22HGQ0VDD5 57 aa8.1□□□□□ -1.11
PTCH1-207ENST00000429896 LAMA5O15230 3695 aa8.1□□□□□ -1.11
PTCH1-207ENST00000429896 PRR15Q8IV56 129 aa8.09□□□□□ -1.11
PTCH1-207ENST00000429896 WDFY3Q8IZQ1 3526 aa8.09□□□□□ -1.11
PTCH1-207ENST00000429896 Q8N377 158 aa8.09□□□□□ -1.11
PTCH1-207ENST00000429896 A0A1B0GVX0 72 aa8.08□□□□□ -1.12
PTCH1-207ENST00000429896 IGLV5-48A0A075B6I7 105 aa8.07□□□□□ -1.12
PTCH1-207ENST00000429896 ASH1LQ9NR48 2969 aaKnown RBP8.07□□□□□ -1.12
PTCH1-207ENST00000429896 UQCR11O14957 56 aa8.07□□□□□ -1.12
PTCH1-207ENST00000429896 ERC2-IT1O76042 136 aa8.07□□□□□ -1.12
PTCH1-207ENST00000429896 RBM12B-AS1Q9P1G2 102 aa8.06□□□□□ -1.12
PTCH1-207ENST00000429896 Q5VSD8 79 aa8.05□□□□□ -1.12
PTCH1-207ENST00000429896 PDZD2O15018 2839 aa8.05□□□□□ -1.12
PTCH1-207ENST00000429896 RELNP78509 3460 aa8.04□□□□□ -1.12
PTCH1-207ENST00000429896 M0R2T5 61 aa8.02□□□□□ -1.13
PTCH1-207ENST00000429896 ASPMQ8IZT6 3477 aa8.02□□□□□ -1.13
PTCH1-207ENST00000429896 Q6ZRN7 208 aaPredicted RBP8□□□□□ -1.13
PTCH1-207ENST00000429896 PRR26Q8N8Z3 221 aa8□□□□□ -1.13
PTCH1-207ENST00000429896 CRYBG3Q68DQ2 2970 aa7.99□□□□□ -1.13
PTCH1-207ENST00000429896 ZANQ9Y493 2812 aa7.99□□□□□ -1.13
PTCH1-207ENST00000429896 FAM229BQ4G0N7 80 aa7.98□□□□□ -1.13
PTCH1-207ENST00000429896 ZFHX4Q86UP3 3567 aa7.94□□□□□ -1.14
PTCH1-207ENST00000429896 NBEAL1Q6ZS30 2694 aa7.94□□□□□ -1.14
PTCH1-207ENST00000429896 Q8NDZ9 215 aa7.94□□□□□ -1.14
PTCH1-207ENST00000429896 Q6ZSA8 131 aa7.92□□□□□ -1.14
PTCH1-207ENST00000429896 SPRR1AP35321 89 aa7.92□□□□□ -1.14
PTCH1-207ENST00000429896 KLKP1Q107X0 134 aa7.91□□□□□ -1.14
PTCH1-207ENST00000429896 CDC42SE1Q9NRR8 79 aa7.91□□□□□ -1.14
PTCH1-207ENST00000429896 PANO1I0J062 215 aa7.91□□□□□ -1.14
PTCH1-207ENST00000429896 CD164Q04900 197 aa7.91□□□□□ -1.14
PTCH1-207ENST00000429896 NBEAL2Q6ZNJ1 2754 aa7.9□□□□□ -1.14
PTCH1-207ENST00000429896 DCHS2Q6V1P9 2916 aa7.89□□□□□ -1.15
PTCH1-207ENST00000429896 A0A1W2PNM2 257 aa7.89□□□□□ -1.15
PTCH1-207ENST00000429896 CYP4F30PQ9H0H9 118 aa7.89□□□□□ -1.15
PTCH1-207ENST00000429896 OTOGQ6ZRI0 2925 aa7.87□□□□□ -1.15
PTCH1-207ENST00000429896 CAMK2N1Q7Z7J9 78 aa7.87□□□□□ -1.15
PTCH1-207ENST00000429896 IGLV7-46A0A075B6I9 117 aa7.86□□□□□ -1.15
PTCH1-207ENST00000429896 ANK3Q12955 4377 aaKnown RBP7.84□□□□□ -1.15
PTCH1-207ENST00000429896 NIPBLQ6KC79 2804 aaeCLIP7.83□□□□□ -1.16
PTCH1-207ENST00000429896 NBPF19A0A087WUL8 3843 aa7.83□□□□□ -1.16
PTCH1-207ENST00000429896 H7BZZ5 65 aa7.83□□□□□ -1.16
PTCH1-207ENST00000429896 BSNQ9UPA5 3926 aa7.82□□□□□ -1.16
PTCH1-207ENST00000429896 SMG1Q96Q15 3661 aaKnown RBP7.8□□□□□ -1.16
PTCH1-207ENST00000429896 SPRR1BP22528 89 aa7.79□□□□□ -1.16
PTCH1-207ENST00000429896 LUZP6Q538Z0 58 aa7.76□□□□□ -1.17
PTCH1-207ENST00000429896 MXRA5Q9NR99 2828 aa7.76□□□□□ -1.17
PTCH1-207ENST00000429896 KTN1-AS1Q86SY8 53 aa7.76□□□□□ -1.17
PTCH1-207ENST00000429896 LINC00483Q53H64 154 aa7.73□□□□□ -1.17
PTCH1-207ENST00000429896 HRES1P13985 223 aa7.72□□□□□ -1.17
PTCH1-207ENST00000429896 OCR1Q9BZK8 76 aa7.72□□□□□ -1.17
PTCH1-207ENST00000429896 LCA10Q71F78 164 aa7.71□□□□□ -1.17
PTCH1-207ENST00000429896 S4R3F8 94 aa7.71□□□□□ -1.17
PTCH1-207ENST00000429896 A0A1B0GU33 70 aa7.7□□□□□ -1.18
PTCH1-207ENST00000429896 KRTAP4-16G5E9R7 235 aaPredicted RBP7.69□□□□□ -1.18
PTCH1-207ENST00000429896 OXTP01178 125 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms