RNA–Protein interactions for RNA: ENST00000416188.2

PHRF1-203, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PHRF1, Length 5,227 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-203ENST00000416188 ITPR2Q14571 2701 aa9.87□□□□□ -0.83
PHRF1-203ENST00000416188 COL6A3P12111 3177 aa9.86□□□□□ -0.83
PHRF1-203ENST00000416188 KRTAP21-3Q3LHN1 58 aa9.86□□□□□ -0.83
PHRF1-203ENST00000416188 IGLV5-48A0A075B6I7 105 aa9.85□□□□□ -0.83
PHRF1-203ENST00000416188 FRYLO94915 3013 aa9.85□□□□□ -0.83
PHRF1-203ENST00000416188 FAM104AQ969W3 186 aa9.84□□□□□ -0.83
PHRF1-203ENST00000416188 IGLV5-37A0A075B6J1 123 aa9.82□□□□□ -0.84
PHRF1-203ENST00000416188 MIR22HGQ0VDD5 57 aa9.81□□□□□ -0.84
PHRF1-203ENST00000416188 REV3LO60673 3130 aa9.81□□□□□ -0.84
PHRF1-203ENST00000416188 SPINT4Q6UDR6 99 aa9.81□□□□□ -0.84
PHRF1-203ENST00000416188 ITPR1Q14643 2758 aa9.8□□□□□ -0.84
PHRF1-203ENST00000416188 FRYQ5TBA9 3013 aa9.8□□□□□ -0.84
PHRF1-203ENST00000416188 HIVEP1P15822 2718 aa9.8□□□□□ -0.84
PHRF1-203ENST00000416188 NSD1Q96L73 2696 aaPredicted RBP9.79□□□□□ -0.84
PHRF1-203ENST00000416188 PRR26Q8N8Z3 221 aa9.79□□□□□ -0.84
PHRF1-203ENST00000416188 Q8N1X5 172 aa9.77□□□□□ -0.85
PHRF1-203ENST00000416188 ATMQ13315 3056 aa9.76□□□□□ -0.85
PHRF1-203ENST00000416188 COL12A1Q99715 3063 aa9.76□□□□□ -0.85
PHRF1-203ENST00000416188 KRTAP1-5Q9BYS1 174 aa9.75□□□□□ -0.85
PHRF1-203ENST00000416188 TACC2O95359 2948 aa9.74□□□□□ -0.85
PHRF1-203ENST00000416188 Q5VSD8 79 aa9.74□□□□□ -0.85
PHRF1-203ENST00000416188 FREM2Q5SZK8 3169 aa9.74□□□□□ -0.85
PHRF1-203ENST00000416188 PLAC8Q9NZF1 115 aa9.73□□□□□ -0.85
PHRF1-203ENST00000416188 IGLV7-46A0A075B6I9 117 aa9.72□□□□□ -0.85
PHRF1-203ENST00000416188 DMXL2Q8TDJ6 3036 aa9.71□□□□□ -0.85
PHRF1-203ENST00000416188 SPANXA2-OT1Q8N9U9 137 aa9.71□□□□□ -0.86
PHRF1-203ENST00000416188 CRIPTQ9P021 101 aa9.7□□□□□ -0.86
PHRF1-203ENST00000416188 OCR1Q9BZK8 76 aa9.69□□□□□ -0.86
PHRF1-203ENST00000416188 STAB2Q8WWQ8 2551 aa9.69□□□□□ -0.86
PHRF1-203ENST00000416188 CYSTM1Q9H1C7 97 aa9.69□□□□□ -0.86
PHRF1-203ENST00000416188 FLG2Q5D862 2391 aaPredicted RBP9.69□□□□□ -0.86
PHRF1-203ENST00000416188 RBM12B-AS1Q9P1G2 102 aa9.68□□□□□ -0.86
PHRF1-203ENST00000416188 LINC01554Q52M75 96 aa9.67□□□□□ -0.86
PHRF1-203ENST00000416188 KRTAP10-2P60368 255 aa9.67□□□□□ -0.86
PHRF1-203ENST00000416188 TENM4Q6N022 2769 aa9.67□□□□□ -0.86
PHRF1-203ENST00000416188 KRTAP10-1P60331 282 aa9.66□□□□□ -0.86
PHRF1-203ENST00000416188 A0A0D9SG42 100 aa9.66□□□□□ -0.86
PHRF1-203ENST00000416188 Q8NDZ9 215 aa9.65□□□□□ -0.86
PHRF1-203ENST00000416188 CD164Q04900 197 aa9.63□□□□□ -0.87
PHRF1-203ENST00000416188 Q6ZSA8 131 aa9.63□□□□□ -0.87
PHRF1-203ENST00000416188 FAM229BQ4G0N7 80 aa9.62□□□□□ -0.87
PHRF1-203ENST00000416188 NBEAL2Q6ZNJ1 2754 aa9.61□□□□□ -0.87
PHRF1-203ENST00000416188 KTN1-AS1Q86SY8 53 aa9.6□□□□□ -0.87
PHRF1-203ENST00000416188 UTP20O75691 2785 aaKnown RBP9.59□□□□□ -0.87
PHRF1-203ENST00000416188 LAMA1P25391 3075 aa9.59□□□□□ -0.87
PHRF1-203ENST00000416188 EYSQ5T1H1 3165 aa9.59□□□□□ -0.87
PHRF1-203ENST00000416188 Q6ZR54 194 aa9.58□□□□□ -0.88
PHRF1-203ENST00000416188 VCANP13611 3396 aa9.57□□□□□ -0.88
PHRF1-203ENST00000416188 Q5XG85 94 aa9.57□□□□□ -0.88
PHRF1-203ENST00000416188 CELSR3Q9NYQ7 3312 aa9.57□□□□□ -0.88
PHRF1-203ENST00000416188 APCP25054 2843 aa9.56□□□□□ -0.88
PHRF1-203ENST00000416188 SPRR1AP35321 89 aa9.55□□□□□ -0.88
PHRF1-203ENST00000416188 NBEAQ8NFP9 2946 aa9.54□□□□□ -0.88
PHRF1-203ENST00000416188 M0R2T5 61 aa9.54□□□□□ -0.88
PHRF1-203ENST00000416188 HRES1P13985 223 aa9.54□□□□□ -0.88
PHRF1-203ENST00000416188 BOD1L1Q8NFC6 3051 aa9.53□□□□□ -0.88
PHRF1-203ENST00000416188 Q1T7F1 81 aa9.53□□□□□ -0.88
PHRF1-203ENST00000416188 CDC42SE1Q9NRR8 79 aa9.53□□□□□ -0.88
PHRF1-203ENST00000416188 FP248Q71RG6 208 aaPredicted RBP9.52□□□□□ -0.89
PHRF1-203ENST00000416188 MMP24-AS1A0A0U1RRL7 71 aa9.51□□□□□ -0.89
PHRF1-203ENST00000416188 KMT2BQ9UMN6 2715 aaPredicted RBP9.51□□□□□ -0.89
PHRF1-203ENST00000416188 LCA10Q71F78 164 aa9.49□□□□□ -0.89
PHRF1-203ENST00000416188 Q8N9P0 234 aaPredicted RBP9.48□□□□□ -0.89
PHRF1-203ENST00000416188 CRYBG3Q68DQ2 2970 aa9.47□□□□□ -0.89
PHRF1-203ENST00000416188 KRTAP26-1Q6PEX3 210 aa9.46□□□□□ -0.89
PHRF1-203ENST00000416188 KALRNO60229 2985 aa9.46□□□□□ -0.89
PHRF1-203ENST00000416188 DMXL1Q9Y485 3027 aa9.46□□□□□ -0.9
PHRF1-203ENST00000416188 OXTP01178 125 aa9.44□□□□□ -0.9
PHRF1-203ENST00000416188 ADGRG4Q8IZF6 3080 aa9.42□□□□□ -0.9
PHRF1-203ENST00000416188 A0A1B0GU33 70 aa9.42□□□□□ -0.9
PHRF1-203ENST00000416188 ZZEF1O43149 2961 aa9.42□□□□□ -0.9
PHRF1-203ENST00000416188 SPRR1BP22528 89 aa9.42□□□□□ -0.9
PHRF1-203ENST00000416188 LINC00472Q9H8W2 130 aa9.41□□□□□ -0.9
PHRF1-203ENST00000416188 ZCCHC13Q8WW36 166 aaKnown RBP9.41□□□□□ -0.9
PHRF1-203ENST00000416188 DMBT1Q9UGM3 2413 aaPredicted RBP9.41□□□□□ -0.9
PHRF1-203ENST00000416188 SEC61BP60468 96 aaKnown RBP9.38□□□□□ -0.91
PHRF1-203ENST00000416188 LRBAP50851 2863 aa9.37□□□□□ -0.91
PHRF1-203ENST00000416188 DNAH14Q0VDD8 3507 aa9.37□□□□□ -0.91
PHRF1-203ENST00000416188 PANO1I0J062 215 aa9.36□□□□□ -0.91
PHRF1-203ENST00000416188 SPTBN5Q9NRC6 3674 aaKnown RBP9.35□□□□□ -0.91
PHRF1-203ENST00000416188 Q5W150 140 aa9.35□□□□□ -0.91
PHRF1-203ENST00000416188 CAMK2N1Q7Z7J9 78 aa9.34□□□□□ -0.91
PHRF1-203ENST00000416188 Q75L30 129 aa9.34□□□□□ -0.91
PHRF1-203ENST00000416188 LINC01558Q9Y6Z2 57 aa9.31□□□□□ -0.92
PHRF1-203ENST00000416188 NIPBLQ6KC79 2804 aaeCLIP9.31□□□□□ -0.92
PHRF1-203ENST00000416188 SPINK7P58062 85 aa9.29□□□□□ -0.92
PHRF1-203ENST00000416188 Q5VV11 94 aa9.28□□□□□ -0.92
PHRF1-203ENST00000416188 Q6ZRN7 208 aaPredicted RBP9.28□□□□□ -0.92
PHRF1-203ENST00000416188 CSAG1Q6PB30 78 aa9.28□□□□□ -0.92
PHRF1-203ENST00000416188 USP34Q70CQ2 3546 aa9.24□□□□□ -0.93
PHRF1-203ENST00000416188 PRAC1Q96KF2 57 aa9.23□□□□□ -0.93
PHRF1-203ENST00000416188 S4R3F8 94 aa9.23□□□□□ -0.93
PHRF1-203ENST00000416188 ZANQ9Y493 2812 aa9.23□□□□□ -0.93
PHRF1-203ENST00000416188 ASH1LQ9NR48 2969 aaKnown RBP9.21□□□□□ -0.93
PHRF1-203ENST00000416188 CELSR2Q9HCU4 2923 aa9.21□□□□□ -0.94
PHRF1-203ENST00000416188 LUZP6Q538Z0 58 aa9.2□□□□□ -0.94
PHRF1-203ENST00000416188 DMAC1Q96GE9 116 aa9.19□□□□□ -0.94
PHRF1-203ENST00000416188 KRTAP4-16G5E9R7 235 aaPredicted RBP9.18□□□□□ -0.94
PHRF1-203ENST00000416188 CFAP47Q6ZTR5 3102 aa9.15□□□□□ -0.94
PHRF1-203ENST00000416188 LINC00483Q53H64 154 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms