RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 NBEAL2Q6ZNJ1 2754 aa3.58□□□□□ -1.84
CCDC88A-203ENST00000412148 LOC100996750A0A140TA64 210 aa3.58□□□□□ -1.84
CCDC88A-203ENST00000412148 C9orf163Q8N9P6 203 aa3.58□□□□□ -1.84
CCDC88A-203ENST00000412148 KRTAP4-6Q9BYQ5 205 aa3.58□□□□□ -1.84
CCDC88A-203ENST00000412148 MPLKIPQ8TAP9 179 aa3.57□□□□□ -1.84
CCDC88A-203ENST00000412148 B9D2Q9BPU9 175 aa3.57□□□□□ -1.84
CCDC88A-203ENST00000412148 CCDC168Q8NDH2 2452 aa3.57□□□□□ -1.84
CCDC88A-203ENST00000412148 A0A096LNI7 61 aa3.57□□□□□ -1.84
CCDC88A-203ENST00000412148 DNAH3Q8TD57 4116 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 KRTAP13-1Q8IUC0 172 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 LIMD2Q9BT23 127 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 ACANP16112 2415 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 NOTCH2Q04721 2471 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 A0A087WSZ3 146 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 CASC2Q6XLA1 102 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 TP53AIP1Q9HCN2 124 aa3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 NSD1Q96L73 2696 aaPredicted RBP3.56□□□□□ -1.84
CCDC88A-203ENST00000412148 UBE2AP49459 152 aa3.55□□□□□ -1.84
CCDC88A-203ENST00000412148 A0A1W2PNN7 141 aa3.55□□□□□ -1.84
CCDC88A-203ENST00000412148 UNC79Q9P2D8 2635 aa3.55□□□□□ -1.84
CCDC88A-203ENST00000412148 ITPR2Q14571 2701 aa3.55□□□□□ -1.84
CCDC88A-203ENST00000412148 IGLV7-46A0A075B6I9 117 aa3.54□□□□□ -1.84
CCDC88A-203ENST00000412148 H0Y9P7 68 aa3.54□□□□□ -1.84
CCDC88A-203ENST00000412148 MTORP42345 2549 aa3.54□□□□□ -1.84
CCDC88A-203ENST00000412148 TEP1Q99973 2627 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-203ENST00000412148 LOC101927531A0A1B0GV80 90 aa3.54□□□□□ -1.84
CCDC88A-203ENST00000412148 MOBPQ13875 183 aa3.54□□□□□ -1.84
CCDC88A-203ENST00000412148 Q6ZR54 194 aa3.54□□□□□ -1.84
CCDC88A-203ENST00000412148 MMP24-AS1A0A0U1RRL7 71 aa3.53□□□□□ -1.84
CCDC88A-203ENST00000412148 LINC00483Q53H64 154 aa3.53□□□□□ -1.84
CCDC88A-203ENST00000412148 LINC00208Q96KT6 92 aa3.53□□□□□ -1.84
CCDC88A-203ENST00000412148 PRLHP81277 87 aa3.53□□□□□ -1.84
CCDC88A-203ENST00000412148 KRTAP24-1Q3LI83 254 aa3.53□□□□□ -1.84
CCDC88A-203ENST00000412148 TENM1Q9UKZ4 2725 aa3.53□□□□□ -1.84
CCDC88A-203ENST00000412148 WFDC13Q8IUB5 93 aa3.53□□□□□ -1.85
CCDC88A-203ENST00000412148 Q8N9P0 234 aaPredicted RBP3.53□□□□□ -1.85
CCDC88A-203ENST00000412148 SETD2Q9BYW2 2564 aaPredicted RBP3.52□□□□□ -1.85
CCDC88A-203ENST00000412148 OTOGQ6ZRI0 2925 aa3.52□□□□□ -1.85
CCDC88A-203ENST00000412148 Q5VV11 94 aa3.52□□□□□ -1.85
CCDC88A-203ENST00000412148 Q96NJ1 140 aa3.52□□□□□ -1.85
CCDC88A-203ENST00000412148 KRTAP1-5Q9BYS1 174 aa3.51□□□□□ -1.85
CCDC88A-203ENST00000412148 PLAC8Q9NZF1 115 aa3.51□□□□□ -1.85
CCDC88A-203ENST00000412148 LRCOL1A6NCL2 159 aa3.5□□□□□ -1.85
CCDC88A-203ENST00000412148 APLNQ9ULZ1 77 aa3.5□□□□□ -1.85
CCDC88A-203ENST00000412148 ANK2Q01484 3957 aa3.5□□□□□ -1.85
CCDC88A-203ENST00000412148 KRTAP11-1Q8IUC1 163 aa3.5□□□□□ -1.85
CCDC88A-203ENST00000412148 K7EIL1 84 aa3.49□□□□□ -1.85
CCDC88A-203ENST00000412148 PMAIP1Q13794 54 aa3.49□□□□□ -1.85
CCDC88A-203ENST00000412148 CMYA5Q8N3K9 4069 aa3.49□□□□□ -1.85
CCDC88A-203ENST00000412148 PHF5AQ7RTV0 110 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-203ENST00000412148 ZNF706Q9Y5V0 76 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-203ENST00000412148 A0A0G2JQZ4 141 aa3.49□□□□□ -1.85
CCDC88A-203ENST00000412148 WWC2-AS2Q96NR7 200 aa3.49□□□□□ -1.85
CCDC88A-203ENST00000412148 IGKV2-24A0A0C4DH68 120 aa3.48□□□□□ -1.85
CCDC88A-203ENST00000412148 A8MUN3 132 aa3.48□□□□□ -1.85
CCDC88A-203ENST00000412148 DEFB116Q30KQ4 102 aa3.48□□□□□ -1.85
CCDC88A-203ENST00000412148 Q6ZRN7 208 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-203ENST00000412148 LINC01558Q9Y6Z2 57 aa3.48□□□□□ -1.85
CCDC88A-203ENST00000412148 C8orf17Q9NRJ1 99 aa3.48□□□□□ -1.85
CCDC88A-203ENST00000412148 TENM3Q9P273 2699 aa3.48□□□□□ -1.85
CCDC88A-203ENST00000412148 PKD1L1Q8TDX9 2849 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 TRRAPQ9Y4A5 3859 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 PSPHP1O15172 72 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 CHTF8P0CG12 524 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 COA5Q86WW8 74 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 SPACA4Q8TDM5 124 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 A0A1B0GVX0 72 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 ATP11AUNQ6ZP68 121 aa3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 FASNP49327 2511 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-203ENST00000412148 DYNC2H1Q8NCM8 4307 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-203ENST00000412148 SEC61BP60468 96 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-203ENST00000412148 CD164Q04900 197 aa3.45□□□□□ -1.86
CCDC88A-203ENST00000412148 PRR4Q16378 134 aa3.45□□□□□ -1.86
CCDC88A-203ENST00000412148 CDC42SE1Q9NRR8 79 aa3.45□□□□□ -1.86
CCDC88A-203ENST00000412148 TENM2Q9NT68 2774 aa3.45□□□□□ -1.86
CCDC88A-203ENST00000412148 ATRQ13535 2644 aa3.45□□□□□ -1.86
CCDC88A-203ENST00000412148 NBDYA0A0U1RRE5 68 aa3.45□□□□□ -1.86
CCDC88A-203ENST00000412148 MRPL34Q9BQ48 92 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-203ENST00000412148 HUWE1Q7Z6Z7 4374 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-203ENST00000412148 HELZ2Q9BYK8 2649 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-203ENST00000412148 KRTAP13-3Q3SY46 172 aa3.44□□□□□ -1.86
CCDC88A-203ENST00000412148 UBE2DNLQ8IWF7 75 aa3.44□□□□□ -1.86
CCDC88A-203ENST00000412148 NUPR2A6NF83 97 aa3.43□□□□□ -1.86
CCDC88A-203ENST00000412148 CHKB-CPT1BH3BT56 60 aa3.43□□□□□ -1.86
CCDC88A-203ENST00000412148 PRR15LQ9BU68 103 aa3.43□□□□□ -1.86
CCDC88A-203ENST00000412148 IGLV5-52A0A0A0MRZ9 124 aa3.43□□□□□ -1.86
CCDC88A-203ENST00000412148 NDUFS5O43920 106 aa3.42□□□□□ -1.86
CCDC88A-203ENST00000412148 KTN1-AS1Q86SY8 53 aa3.42□□□□□ -1.86
CCDC88A-203ENST00000412148 IGLV9-49A0A0B4J1Y8 123 aa3.42□□□□□ -1.86
CCDC88A-203ENST00000412148 C8orf87E5RJ46 101 aa3.42□□□□□ -1.86
CCDC88A-203ENST00000412148 A0A087X002 238 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 LCA10Q71F78 164 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 PRAC1Q96KF2 57 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 A6NN06 94 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 PANO1I0J062 215 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 ZNF861PO60384 105 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 HRES1P13985 223 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 DNAH9Q9NYC9 4486 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 CDK2AP2O75956 126 aa3.41□□□□□ -1.86
CCDC88A-203ENST00000412148 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms