RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 OCR1Q9BZK8 76 aa4.63□□□□□ -1.67
SCN9A-202ENST00000409435 COL6A5A8TX70 2615 aa4.63□□□□□ -1.67
SCN9A-202ENST00000409435 PLAC8Q9NZF1 115 aa4.63□□□□□ -1.67
SCN9A-202ENST00000409435 IGSF10Q6WRI0 2623 aa4.62□□□□□ -1.67
SCN9A-202ENST00000409435 KCNQ1DNQ9H478 68 aa4.62□□□□□ -1.67
SCN9A-202ENST00000409435 FAM229BQ4G0N7 80 aa4.61□□□□□ -1.67
SCN9A-202ENST00000409435 STAB1Q9NY15 2570 aa4.61□□□□□ -1.67
SCN9A-202ENST00000409435 SPRR4Q96PI1 79 aa4.6□□□□□ -1.67
SCN9A-202ENST00000409435 CHD6Q8TD26 2715 aa4.59□□□□□ -1.67
SCN9A-202ENST00000409435 Q6ZR54 194 aa4.59□□□□□ -1.67
SCN9A-202ENST00000409435 Q8N377 158 aa4.57□□□□□ -1.68
SCN9A-202ENST00000409435 ROMO1P60602 79 aa4.57□□□□□ -1.68
SCN9A-202ENST00000409435 TEX15Q9BXT5 2789 aa4.56□□□□□ -1.68
SCN9A-202ENST00000409435 NOTCH1P46531 2555 aa4.53□□□□□ -1.68
SCN9A-202ENST00000409435 A0A1W2PNM2 257 aa4.53□□□□□ -1.68
SCN9A-202ENST00000409435 HRES1P13985 223 aa4.51□□□□□ -1.69
SCN9A-202ENST00000409435 KRTAP1-5Q9BYS1 174 aa4.51□□□□□ -1.69
SCN9A-202ENST00000409435 CENPEQ02224 2701 aa4.5□□□□□ -1.69
SCN9A-202ENST00000409435 CHD7Q9P2D1 2997 aa4.49□□□□□ -1.69
SCN9A-202ENST00000409435 RPL37P61927 97 aaKnown RBP4.48□□□□□ -1.69
SCN9A-202ENST00000409435 CYSTM1Q9H1C7 97 aa4.48□□□□□ -1.69
SCN9A-202ENST00000409435 CHD9Q3L8U1 2897 aa4.48□□□□□ -1.69
SCN9A-202ENST00000409435 A0A0G2JQZ4 141 aa4.47□□□□□ -1.69
SCN9A-202ENST00000409435 NDUFAF8A1L188 74 aa4.47□□□□□ -1.69
SCN9A-202ENST00000409435 H1FX-AS1Q4G0G2 97 aa4.46□□□□□ -1.69
SCN9A-202ENST00000409435 NBEAL1Q6ZS30 2694 aa4.46□□□□□ -1.69
SCN9A-202ENST00000409435 DNAH12Q6ZR08 3092 aa4.46□□□□□ -1.7
SCN9A-202ENST00000409435 AKAP13Q12802 2813 aa4.46□□□□□ -1.7
SCN9A-202ENST00000409435 KRTAP25-1Q3LHN0 102 aa4.45□□□□□ -1.7
SCN9A-202ENST00000409435 BPTFQ12830 3046 aa4.44□□□□□ -1.7
SCN9A-202ENST00000409435 RANBP2P49792 3224 aaKnown RBP4.44□□□□□ -1.7
SCN9A-202ENST00000409435 A6NN06 94 aa4.43□□□□□ -1.7
SCN9A-202ENST00000409435 ITPR2Q14571 2701 aa4.42□□□□□ -1.7
SCN9A-202ENST00000409435 DSPP15924 2871 aaKnown RBP4.42□□□□□ -1.7
SCN9A-202ENST00000409435 PCNTO95613 3336 aa4.42□□□□□ -1.7
SCN9A-202ENST00000409435 PLAC4Q8WY50 150 aa4.41□□□□□ -1.7
SCN9A-202ENST00000409435 HTTP42858 3142 aa4.4□□□□□ -1.7
SCN9A-202ENST00000409435 TNRC18O15417 2968 aaPredicted RBP4.4□□□□□ -1.71
SCN9A-202ENST00000409435 MMP24-AS1A0A0U1RRL7 71 aa4.39□□□□□ -1.71
SCN9A-202ENST00000409435 S4R3F8 94 aa4.38□□□□□ -1.71
SCN9A-202ENST00000409435 TRANK1O15050 2925 aa4.38□□□□□ -1.71
SCN9A-202ENST00000409435 SPATA8Q6RVD6 105 aa4.38□□□□□ -1.71
SCN9A-202ENST00000409435 C5orf42Q9H799 3197 aa4.37□□□□□ -1.71
SCN9A-202ENST00000409435 PRRC2CQ9Y520 2896 aaKnown RBP4.37□□□□□ -1.71
SCN9A-202ENST00000409435 R4GN34 69 aa4.36□□□□□ -1.71
SCN9A-202ENST00000409435 TENM4Q6N022 2769 aa4.36□□□□□ -1.71
SCN9A-202ENST00000409435 HIVEP1P15822 2718 aa4.36□□□□□ -1.71
SCN9A-202ENST00000409435 MGAQ8IWI9 3026 aa4.36□□□□□ -1.71
SCN9A-202ENST00000409435 KMT2BQ9UMN6 2715 aaPredicted RBP4.35□□□□□ -1.71
SCN9A-202ENST00000409435 ZCCHC13Q8WW36 166 aaKnown RBP4.35□□□□□ -1.71
SCN9A-202ENST00000409435 LAMA3Q16787 3333 aa4.34□□□□□ -1.71
SCN9A-202ENST00000409435 Q5W150 140 aa4.34□□□□□ -1.71
SCN9A-202ENST00000409435 C20orf166-AS1Q96NR2 134 aa4.34□□□□□ -1.71
SCN9A-202ENST00000409435 A0A087X002 238 aa4.33□□□□□ -1.72
SCN9A-202ENST00000409435 Q6ZRN7 208 aaPredicted RBP4.33□□□□□ -1.72
SCN9A-202ENST00000409435 STAB2Q8WWQ8 2551 aa4.33□□□□□ -1.72
SCN9A-202ENST00000409435 MKI67P46013 3256 aaKnown RBP4.3□□□□□ -1.72
SCN9A-202ENST00000409435 A0A0C4DFX4 3053 aa4.3□□□□□ -1.72
SCN9A-202ENST00000409435 KRTAP29-1A8MX34 341 aaPredicted RBP4.3□□□□□ -1.72
SCN9A-202ENST00000409435 UBR5O95071 2799 aaPredicted RBP4.28□□□□□ -1.72
SCN9A-202ENST00000409435 PRUNE2Q8WUY3 3088 aa4.28□□□□□ -1.72
SCN9A-202ENST00000409435 PANO1I0J062 215 aa4.28□□□□□ -1.72
SCN9A-202ENST00000409435 ADM2Q7Z4H4 148 aa4.27□□□□□ -1.73
SCN9A-202ENST00000409435 NSD1Q96L73 2696 aaPredicted RBP4.27□□□□□ -1.73
SCN9A-202ENST00000409435 M0QZ58 72 aa4.26□□□□□ -1.73
SCN9A-202ENST00000409435 Q8NDZ9 215 aa4.26□□□□□ -1.73
SCN9A-202ENST00000409435 REV3LO60673 3130 aa4.26□□□□□ -1.73
SCN9A-202ENST00000409435 DMBT1Q9UGM3 2413 aaPredicted RBP4.26□□□□□ -1.73
SCN9A-202ENST00000409435 LINC00472Q9H8W2 130 aa4.25□□□□□ -1.73
SCN9A-202ENST00000409435 RPS29P62273 56 aaKnown RBP4.24□□□□□ -1.73
SCN9A-202ENST00000409435 FLNCQ14315 2725 aa4.24□□□□□ -1.73
SCN9A-202ENST00000409435 MAP1AP78559 2803 aaPredicted RBP4.24□□□□□ -1.73
SCN9A-202ENST00000409435 KRTAP26-1Q6PEX3 210 aa4.24□□□□□ -1.73
SCN9A-202ENST00000409435 CRYBG3Q68DQ2 2970 aa4.22□□□□□ -1.73
SCN9A-202ENST00000409435 CFAP54Q96N23 3096 aa4.22□□□□□ -1.73
SCN9A-202ENST00000409435 A8MUU9 505 aa4.21□□□□□ -1.74
SCN9A-202ENST00000409435 BRCA2P51587 3418 aa4.19□□□□□ -1.74
SCN9A-202ENST00000409435 SPRR1BP22528 89 aa4.19□□□□□ -1.74
SCN9A-202ENST00000409435 SPRR1AP35321 89 aa4.19□□□□□ -1.74
SCN9A-202ENST00000409435 WDFY4Q6ZS81 3184 aa4.19□□□□□ -1.74
SCN9A-202ENST00000409435 A0A1B0GVY2 172 aa4.18□□□□□ -1.74
SCN9A-202ENST00000409435 PP632Q6XCG6 107 aa4.18□□□□□ -1.74
SCN9A-202ENST00000409435 C10orf95Q9H7T3 257 aa4.17□□□□□ -1.74
SCN9A-202ENST00000409435 FRYQ5TBA9 3013 aa4.17□□□□□ -1.74
SCN9A-202ENST00000409435 FLG2Q5D862 2391 aaPredicted RBP4.17□□□□□ -1.74
SCN9A-202ENST00000409435 ITPR1Q14643 2758 aa4.16□□□□□ -1.74
SCN9A-202ENST00000409435 SZT2Q5T011 3432 aa4.15□□□□□ -1.74
SCN9A-202ENST00000409435 ASH1LQ9NR48 2969 aaKnown RBP4.15□□□□□ -1.74
SCN9A-202ENST00000409435 COL6A3P12111 3177 aa4.15□□□□□ -1.74
SCN9A-202ENST00000409435 KRTAP11-1Q8IUC1 163 aa4.15□□□□□ -1.75
SCN9A-202ENST00000409435 A8MU10 97 aa4.14□□□□□ -1.75
SCN9A-202ENST00000409435 USP34Q70CQ2 3546 aa4.14□□□□□ -1.75
SCN9A-202ENST00000409435 APCP25054 2843 aa4.14□□□□□ -1.75
SCN9A-202ENST00000409435 EYSQ5T1H1 3165 aa4.13□□□□□ -1.75
SCN9A-202ENST00000409435 UTP20O75691 2785 aaKnown RBP4.12□□□□□ -1.75
SCN9A-202ENST00000409435 TPRXLQ17RH7 258 aa4.12□□□□□ -1.75
SCN9A-202ENST00000409435 KRTAP4-16G5E9R7 235 aaPredicted RBP4.09□□□□□ -1.75
SCN9A-202ENST00000409435 UNC80Q8N2C7 3258 aa4.09□□□□□ -1.75
SCN9A-202ENST00000409435 FRYLO94915 3013 aa4.09□□□□□ -1.76
SCN9A-202ENST00000409435 KRTAP13-2Q52LG2 175 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 112.2 ms