RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.26□□□□□ -1.25
SYNPO-202ENST00000394243 SPRR1AP35321 89 aa7.26□□□□□ -1.25
SYNPO-202ENST00000394243 S4R3F8 94 aa7.26□□□□□ -1.25
SYNPO-202ENST00000394243 Q6ZSA8 131 aa7.25□□□□□ -1.25
SYNPO-202ENST00000394243 KRTAP16-1A8MUX0 517 aa7.25□□□□□ -1.25
SYNPO-202ENST00000394243 RPL37P61927 97 aaKnown RBP7.24□□□□□ -1.25
SYNPO-202ENST00000394243 ASB16-AS1Q495Z4 193 aa7.24□□□□□ -1.25
SYNPO-202ENST00000394243 Q5VSD8 79 aa7.23□□□□□ -1.25
SYNPO-202ENST00000394243 UNC80Q8N2C7 3258 aa7.22□□□□□ -1.25
SYNPO-202ENST00000394243 EYSQ5T1H1 3165 aa7.22□□□□□ -1.25
SYNPO-202ENST00000394243 PLAC4Q8WY50 150 aa7.21□□□□□ -1.26
SYNPO-202ENST00000394243 FASNP49327 2511 aaKnown RBP7.2□□□□□ -1.26
SYNPO-202ENST00000394243 H1FX-AS1Q4G0G2 97 aa7.2□□□□□ -1.26
SYNPO-202ENST00000394243 USP34Q70CQ2 3546 aa7.2□□□□□ -1.26
SYNPO-202ENST00000394243 KRTAP26-1Q6PEX3 210 aa7.18□□□□□ -1.26
SYNPO-202ENST00000394243 MGAM2Q2M2H8 2515 aa7.18□□□□□ -1.26
SYNPO-202ENST00000394243 A6NN06 94 aa7.17□□□□□ -1.26
SYNPO-202ENST00000394243 SPRR1BP22528 89 aa7.16□□□□□ -1.26
SYNPO-202ENST00000394243 TNP2Q05952 138 aa7.16□□□□□ -1.26
SYNPO-202ENST00000394243 R4GN34 69 aa7.15□□□□□ -1.26
SYNPO-202ENST00000394243 SPATA8Q6RVD6 105 aa7.15□□□□□ -1.26
SYNPO-202ENST00000394243 HTTP42858 3142 aa7.13□□□□□ -1.27
SYNPO-202ENST00000394243 Q6ZR54 194 aa7.13□□□□□ -1.27
SYNPO-202ENST00000394243 AKAP13Q12802 2813 aa7.13□□□□□ -1.27
SYNPO-202ENST00000394243 A0A0C4DFX4 3053 aa7.12□□□□□ -1.27
SYNPO-202ENST00000394243 EPG5Q9HCE0 2579 aa7.1□□□□□ -1.27
SYNPO-202ENST00000394243 VCANP13611 3396 aa7.1□□□□□ -1.27
SYNPO-202ENST00000394243 RANBP2P49792 3224 aaKnown RBP7.1□□□□□ -1.27
SYNPO-202ENST00000394243 KRTAP25-1Q3LHN0 102 aa7.1□□□□□ -1.27
SYNPO-202ENST00000394243 ADM2Q7Z4H4 148 aa7.09□□□□□ -1.27
SYNPO-202ENST00000394243 PLAC8Q9NZF1 115 aa7.09□□□□□ -1.27
SYNPO-202ENST00000394243 KRTAP29-1A8MX34 341 aaPredicted RBP7.08□□□□□ -1.28
SYNPO-202ENST00000394243 MYO15AQ9UKN7 3530 aa7.08□□□□□ -1.28
SYNPO-202ENST00000394243 CFAP54Q96N23 3096 aa7.05□□□□□ -1.28
SYNPO-202ENST00000394243 KRTAP1-3Q8IUG1 177 aa7.05□□□□□ -1.28
SYNPO-202ENST00000394243 A8MU10 97 aa7.04□□□□□ -1.28
SYNPO-202ENST00000394243 NDUFAF8A1L188 74 aa7.04□□□□□ -1.28
SYNPO-202ENST00000394243 SPEGQ15772 3267 aa7.04□□□□□ -1.28
SYNPO-202ENST00000394243 M0QZ58 72 aa7.03□□□□□ -1.28
SYNPO-202ENST00000394243 DMBT1Q9UGM3 2413 aaPredicted RBP7.02□□□□□ -1.28
SYNPO-202ENST00000394243 CELSR3Q9NYQ7 3312 aa7.01□□□□□ -1.29
SYNPO-202ENST00000394243 ATRQ13535 2644 aa7.01□□□□□ -1.29
SYNPO-202ENST00000394243 KRTAP1-1Q07627 177 aa7.01□□□□□ -1.29
SYNPO-202ENST00000394243 CHD6Q8TD26 2715 aa6.99□□□□□ -1.29
SYNPO-202ENST00000394243 FLNAP21333 2647 aaKnown RBP6.99□□□□□ -1.29
SYNPO-202ENST00000394243 SPTBN5Q9NRC6 3674 aaKnown RBP6.98□□□□□ -1.29
SYNPO-202ENST00000394243 HECTD1Q9ULT8 2610 aa6.97□□□□□ -1.29
SYNPO-202ENST00000394243 NBEAL1Q6ZS30 2694 aa6.97□□□□□ -1.29
SYNPO-202ENST00000394243 KRTAP4-16G5E9R7 235 aaPredicted RBP6.97□□□□□ -1.29
SYNPO-202ENST00000394243 A0A087X002 238 aa6.94□□□□□ -1.3
SYNPO-202ENST00000394243 NOTCH2NLQ7Z3S9 236 aa6.94□□□□□ -1.3
SYNPO-202ENST00000394243 ITPR3Q14573 2671 aa6.94□□□□□ -1.3
SYNPO-202ENST00000394243 PANO1I0J062 215 aa6.93□□□□□ -1.3
SYNPO-202ENST00000394243 COL6A3P12111 3177 aa6.93□□□□□ -1.3
SYNPO-202ENST00000394243 WDFY4Q6ZS81 3184 aa6.93□□□□□ -1.3
SYNPO-202ENST00000394243 KRTAP1-5Q9BYS1 174 aa6.93□□□□□ -1.3
SYNPO-202ENST00000394243 MAST4O15021 2626 aa6.92□□□□□ -1.3
SYNPO-202ENST00000394243 LCE6AA0A183 80 aa6.92□□□□□ -1.3
SYNPO-202ENST00000394243 CHD7Q9P2D1 2997 aa6.92□□□□□ -1.3
SYNPO-202ENST00000394243 CENPEQ02224 2701 aa6.87□□□□□ -1.31
SYNPO-202ENST00000394243 VPS13AQ96RL7 3174 aa6.87□□□□□ -1.31
SYNPO-202ENST00000394243 C20orf166-AS1Q96NR2 134 aa6.86□□□□□ -1.31
SYNPO-202ENST00000394243 LAMA1P25391 3075 aa6.85□□□□□ -1.31
SYNPO-202ENST00000394243 UNC79Q9P2D8 2635 aa6.85□□□□□ -1.31
SYNPO-202ENST00000394243 TRIOO75962 3097 aa6.84□□□□□ -1.31
SYNPO-202ENST00000394243 GCN1Q92616 2671 aaKnown RBP6.84□□□□□ -1.32
SYNPO-202ENST00000394243 FLNBO75369 2602 aaKnown RBP6.83□□□□□ -1.32
SYNPO-202ENST00000394243 FREM2Q5SZK8 3169 aa6.82□□□□□ -1.32
SYNPO-202ENST00000394243 STAB1Q9NY15 2570 aa6.81□□□□□ -1.32
SYNPO-202ENST00000394243 SEC61BP60468 96 aaKnown RBP6.81□□□□□ -1.32
SYNPO-202ENST00000394243 A8MUU9 505 aa6.81□□□□□ -1.32
SYNPO-202ENST00000394243 CFAP46Q8IYW2 2715 aa6.8□□□□□ -1.32
SYNPO-202ENST00000394243 NOTCH1P46531 2555 aa6.8□□□□□ -1.32
SYNPO-202ENST00000394243 KRTAP10-1P60331 282 aa6.78□□□□□ -1.32
SYNPO-202ENST00000394243 REV3LO60673 3130 aa6.78□□□□□ -1.32
SYNPO-202ENST00000394243 WDFY3Q8IZQ1 3526 aa6.78□□□□□ -1.32
SYNPO-202ENST00000394243 STAB2Q8WWQ8 2551 aa6.77□□□□□ -1.33
SYNPO-202ENST00000394243 KRTAP10-2P60368 255 aa6.75□□□□□ -1.33
SYNPO-202ENST00000394243 KRTAP11-1Q8IUC1 163 aa6.75□□□□□ -1.33
SYNPO-202ENST00000394243 NBEAL2Q6ZNJ1 2754 aa6.73□□□□□ -1.33
SYNPO-202ENST00000394243 TEX15Q9BXT5 2789 aa6.72□□□□□ -1.33
SYNPO-202ENST00000394243 HELZ2Q9BYK8 2649 aaKnown RBP6.69□□□□□ -1.34
SYNPO-202ENST00000394243 C10orf95Q9H7T3 257 aa6.68□□□□□ -1.34
SYNPO-202ENST00000394243 KRTAP7-1Q8IUC3 87 aa6.66□□□□□ -1.34
SYNPO-202ENST00000394243 COL6A5A8TX70 2615 aa6.65□□□□□ -1.34
SYNPO-202ENST00000394243 MGAQ8IWI9 3026 aa6.65□□□□□ -1.34
SYNPO-202ENST00000394243 DMDP11532 3685 aa6.63□□□□□ -1.35
SYNPO-202ENST00000394243 FRYQ5TBA9 3013 aa6.61□□□□□ -1.35
SYNPO-202ENST00000394243 ASPMQ8IZT6 3477 aa6.6□□□□□ -1.35
SYNPO-202ENST00000394243 MUC3AQ02505 3323 aa6.59□□□□□ -1.35
SYNPO-202ENST00000394243 CHD9Q3L8U1 2897 aa6.58□□□□□ -1.36
SYNPO-202ENST00000394243 FRYLO94915 3013 aa6.58□□□□□ -1.36
SYNPO-202ENST00000394243 TNP1P09430 55 aa6.56□□□□□ -1.36
SYNPO-202ENST00000394243 ITPR1Q14643 2758 aa6.55□□□□□ -1.36
SYNPO-202ENST00000394243 TNRC18O15417 2968 aaPredicted RBP6.55□□□□□ -1.36
SYNPO-202ENST00000394243 MAP1AP78559 2803 aaPredicted RBP6.55□□□□□ -1.36
SYNPO-202ENST00000394243 RPS29P62273 56 aaKnown RBP6.55□□□□□ -1.36
SYNPO-202ENST00000394243 KALRNO60229 2985 aa6.55□□□□□ -1.36
SYNPO-202ENST00000394243 TEP1Q99973 2627 aaKnown RBP6.54□□□□□ -1.36
SYNPO-202ENST00000394243 KRTAP13-2Q52LG2 175 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms