RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 EPG5Q9HCE0 2579 aa5.91□□□□□ -1.46
SNX1-202ENST00000380285 PRAC1Q96KF2 57 aa5.9□□□□□ -1.47
SNX1-202ENST00000380285 KRTAP1-1Q07627 177 aa5.89□□□□□ -1.47
SNX1-202ENST00000380285 Q5W150 140 aa5.89□□□□□ -1.47
SNX1-202ENST00000380285 MGAM2Q2M2H8 2515 aa5.87□□□□□ -1.47
SNX1-202ENST00000380285 Q8NDZ9 215 aa5.87□□□□□ -1.47
SNX1-202ENST00000380285 MKI67P46013 3256 aaKnown RBP5.87□□□□□ -1.47
SNX1-202ENST00000380285 Q6ZR54 194 aa5.87□□□□□ -1.47
SNX1-202ENST00000380285 ITPR3Q14573 2671 aa5.87□□□□□ -1.47
SNX1-202ENST00000380285 Q6ZSA8 131 aa5.86□□□□□ -1.47
SNX1-202ENST00000380285 CSAG1Q6PB30 78 aa5.86□□□□□ -1.47
SNX1-202ENST00000380285 SPINK7P58062 85 aa5.86□□□□□ -1.47
SNX1-202ENST00000380285 OXTP01178 125 aa5.85□□□□□ -1.47
SNX1-202ENST00000380285 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.85□□□□□ -1.47
SNX1-202ENST00000380285 ATRQ13535 2644 aa5.85□□□□□ -1.47
SNX1-202ENST00000380285 S4R3F8 94 aa5.85□□□□□ -1.47
SNX1-202ENST00000380285 SMR3BP02814 79 aaPredicted RBP5.84□□□□□ -1.47
SNX1-202ENST00000380285 VPS13AQ96RL7 3174 aa5.84□□□□□ -1.47
SNX1-202ENST00000380285 UNC80Q8N2C7 3258 aa5.83□□□□□ -1.48
SNX1-202ENST00000380285 DNAH14Q0VDD8 3507 aa5.83□□□□□ -1.48
SNX1-202ENST00000380285 ROMO1P60602 79 aa5.82□□□□□ -1.48
SNX1-202ENST00000380285 USP34Q70CQ2 3546 aa5.81□□□□□ -1.48
SNX1-202ENST00000380285 M0R2T5 61 aa5.81□□□□□ -1.48
SNX1-202ENST00000380285 VCANP13611 3396 aa5.81□□□□□ -1.48
SNX1-202ENST00000380285 RPL37P61927 97 aaKnown RBP5.81□□□□□ -1.48
SNX1-202ENST00000380285 KRTAP26-1Q6PEX3 210 aa5.81□□□□□ -1.48
SNX1-202ENST00000380285 FREM2Q5SZK8 3169 aa5.79□□□□□ -1.48
SNX1-202ENST00000380285 AKAP13Q12802 2813 aa5.79□□□□□ -1.48
SNX1-202ENST00000380285 TRIOO75962 3097 aa5.79□□□□□ -1.48
SNX1-202ENST00000380285 KRTAP29-1A8MX34 341 aaPredicted RBP5.78□□□□□ -1.48
SNX1-202ENST00000380285 RANBP2P49792 3224 aaKnown RBP5.78□□□□□ -1.48
SNX1-202ENST00000380285 KRTAP4-16G5E9R7 235 aaPredicted RBP5.77□□□□□ -1.49
SNX1-202ENST00000380285 MAST4O15021 2626 aa5.77□□□□□ -1.49
SNX1-202ENST00000380285 H1FX-AS1Q4G0G2 97 aa5.77□□□□□ -1.49
SNX1-202ENST00000380285 NBEAQ8NFP9 2946 aa5.76□□□□□ -1.49
SNX1-202ENST00000380285 NBEAL1Q6ZS30 2694 aa5.75□□□□□ -1.49
SNX1-202ENST00000380285 SPATA8Q6RVD6 105 aa5.75□□□□□ -1.49
SNX1-202ENST00000380285 LCE6AA0A183 80 aa5.74□□□□□ -1.49
SNX1-202ENST00000380285 HECTD1Q9ULT8 2610 aa5.73□□□□□ -1.49
SNX1-202ENST00000380285 FLNBO75369 2602 aaKnown RBP5.73□□□□□ -1.49
SNX1-202ENST00000380285 HELZ2Q9BYK8 2649 aaKnown RBP5.73□□□□□ -1.49
SNX1-202ENST00000380285 A0A087X002 238 aa5.72□□□□□ -1.49
SNX1-202ENST00000380285 CENPEQ02224 2701 aa5.72□□□□□ -1.49
SNX1-202ENST00000380285 CFAP46Q8IYW2 2715 aa5.72□□□□□ -1.49
SNX1-202ENST00000380285 R4GN34 69 aa5.72□□□□□ -1.49
SNX1-202ENST00000380285 FRYQ5TBA9 3013 aa5.72□□□□□ -1.49
SNX1-202ENST00000380285 CELSR3Q9NYQ7 3312 aa5.71□□□□□ -1.49
SNX1-202ENST00000380285 PRUNE2Q8WUY3 3088 aa5.71□□□□□ -1.49
SNX1-202ENST00000380285 CHD6Q8TD26 2715 aa5.71□□□□□ -1.5
SNX1-202ENST00000380285 SPEGQ15772 3267 aa5.71□□□□□ -1.5
SNX1-202ENST00000380285 GCN1Q92616 2671 aaKnown RBP5.68□□□□□ -1.5
SNX1-202ENST00000380285 LAMA1P25391 3075 aa5.68□□□□□ -1.5
SNX1-202ENST00000380285 CHD7Q9P2D1 2997 aa5.68□□□□□ -1.5
SNX1-202ENST00000380285 A6NN06 94 aa5.67□□□□□ -1.5
SNX1-202ENST00000380285 TRANK1O15050 2925 aa5.67□□□□□ -1.5
SNX1-202ENST00000380285 HTTP42858 3142 aa5.66□□□□□ -1.5
SNX1-202ENST00000380285 STAB1Q9NY15 2570 aa5.65□□□□□ -1.5
SNX1-202ENST00000380285 DMBT1Q9UGM3 2413 aaPredicted RBP5.65□□□□□ -1.5
SNX1-202ENST00000380285 UNC79Q9P2D8 2635 aa5.65□□□□□ -1.51
SNX1-202ENST00000380285 RPS29P62273 56 aaKnown RBP5.65□□□□□ -1.51
SNX1-202ENST00000380285 KMT2BQ9UMN6 2715 aaPredicted RBP5.64□□□□□ -1.51
SNX1-202ENST00000380285 DSPP15924 2871 aaKnown RBP5.63□□□□□ -1.51
SNX1-202ENST00000380285 KRTAP1-5Q9BYS1 174 aa5.62□□□□□ -1.51
SNX1-202ENST00000380285 KRTAP25-1Q3LHN0 102 aa5.61□□□□□ -1.51
SNX1-202ENST00000380285 MAP1AP78559 2803 aaPredicted RBP5.6□□□□□ -1.51
SNX1-202ENST00000380285 PANO1I0J062 215 aa5.6□□□□□ -1.51
SNX1-202ENST00000380285 FRYLO94915 3013 aa5.6□□□□□ -1.51
SNX1-202ENST00000380285 TEX15Q9BXT5 2789 aa5.58□□□□□ -1.52
SNX1-202ENST00000380285 M0QZ58 72 aa5.58□□□□□ -1.52
SNX1-202ENST00000380285 NDUFAF8A1L188 74 aa5.57□□□□□ -1.52
SNX1-202ENST00000380285 SZT2Q5T011 3432 aa5.57□□□□□ -1.52
SNX1-202ENST00000380285 NOTCH1P46531 2555 aa5.57□□□□□ -1.52
SNX1-202ENST00000380285 MYO15AQ9UKN7 3530 aa5.57□□□□□ -1.52
SNX1-202ENST00000380285 PLAC4Q8WY50 150 aa5.56□□□□□ -1.52
SNX1-202ENST00000380285 ADM2Q7Z4H4 148 aa5.53□□□□□ -1.52
SNX1-202ENST00000380285 REV3LO60673 3130 aa5.53□□□□□ -1.52
SNX1-202ENST00000380285 TEP1Q99973 2627 aaKnown RBP5.53□□□□□ -1.52
SNX1-202ENST00000380285 WDFY4Q6ZS81 3184 aa5.52□□□□□ -1.53
SNX1-202ENST00000380285 ZNF292O60281 2723 aa5.52□□□□□ -1.53
SNX1-202ENST00000380285 KRTAP10-1P60331 282 aa5.51□□□□□ -1.53
SNX1-202ENST00000380285 NOTCH2NLQ7Z3S9 236 aa5.5□□□□□ -1.53
SNX1-202ENST00000380285 COL6A3P12111 3177 aa5.5□□□□□ -1.53
SNX1-202ENST00000380285 CHD9Q3L8U1 2897 aa5.48□□□□□ -1.53
SNX1-202ENST00000380285 Q5VSD8 79 aa5.48□□□□□ -1.53
SNX1-202ENST00000380285 SETXQ7Z333 2677 aaKnown RBP5.48□□□□□ -1.53
SNX1-202ENST00000380285 COL6A5A8TX70 2615 aa5.47□□□□□ -1.53
SNX1-202ENST00000380285 MGAQ8IWI9 3026 aa5.47□□□□□ -1.53
SNX1-202ENST00000380285 STAB2Q8WWQ8 2551 aa5.46□□□□□ -1.53
SNX1-202ENST00000380285 KRTAP13-1Q8IUC0 172 aa5.46□□□□□ -1.54
SNX1-202ENST00000380285 TACC2O95359 2948 aa5.46□□□□□ -1.54
SNX1-202ENST00000380285 KRTAP10-2P60368 255 aa5.46□□□□□ -1.54
SNX1-202ENST00000380285 WDFY3Q8IZQ1 3526 aa5.45□□□□□ -1.54
SNX1-202ENST00000380285 CFAP47Q6ZTR5 3102 aa5.45□□□□□ -1.54
SNX1-202ENST00000380285 C20orf166-AS1Q96NR2 134 aa5.44□□□□□ -1.54
SNX1-202ENST00000380285 KALRNO60229 2985 aa5.44□□□□□ -1.54
SNX1-202ENST00000380285 NBEAL2Q6ZNJ1 2754 aa5.44□□□□□ -1.54
SNX1-202ENST00000380285 ITPR2Q14571 2701 aa5.43□□□□□ -1.54
SNX1-202ENST00000380285 NSD1Q96L73 2696 aaPredicted RBP5.43□□□□□ -1.54
SNX1-202ENST00000380285 Q6ZRN7 208 aaPredicted RBP5.41□□□□□ -1.54
SNX1-202ENST00000380285 KRTAP7-1Q8IUC3 87 aa5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 137.5 ms