RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 FP248Q71RG6 208 aaPredicted RBP7.28□□□□□ -1.24
VPS13A-205ENST00000376636 GOLGB1Q14789 3259 aaKnown RBP7.26□□□□□ -1.25
VPS13A-205ENST00000376636 CHD6Q8TD26 2715 aa7.26□□□□□ -1.25
VPS13A-205ENST00000376636 NOTCH1P46531 2555 aa7.25□□□□□ -1.25
VPS13A-205ENST00000376636 MMP24-AS1A0A0U1RRL7 71 aa7.25□□□□□ -1.25
VPS13A-205ENST00000376636 Q5W150 140 aa7.23□□□□□ -1.25
VPS13A-205ENST00000376636 PLAC4Q8WY50 150 aa7.22□□□□□ -1.25
VPS13A-205ENST00000376636 GCN1Q92616 2671 aaKnown RBP7.21□□□□□ -1.26
VPS13A-205ENST00000376636 SEC61BP60468 96 aaKnown RBP7.2□□□□□ -1.26
VPS13A-205ENST00000376636 UNC79Q9P2D8 2635 aa7.19□□□□□ -1.26
VPS13A-205ENST00000376636 M0QZ58 72 aa7.19□□□□□ -1.26
VPS13A-205ENST00000376636 COL6A5A8TX70 2615 aa7.19□□□□□ -1.26
VPS13A-205ENST00000376636 CASC10Q5T4H9 136 aa7.18□□□□□ -1.26
VPS13A-205ENST00000376636 TEX15Q9BXT5 2789 aa7.17□□□□□ -1.26
VPS13A-205ENST00000376636 HELZ2Q9BYK8 2649 aaKnown RBP7.16□□□□□ -1.26
VPS13A-205ENST00000376636 LINC00472Q9H8W2 130 aa7.13□□□□□ -1.27
VPS13A-205ENST00000376636 PLAC8Q9NZF1 115 aa7.11□□□□□ -1.27
VPS13A-205ENST00000376636 CEP350Q5VT06 3117 aa7.11□□□□□ -1.27
VPS13A-205ENST00000376636 A0A096LNT2 108 aa7.1□□□□□ -1.27
VPS13A-205ENST00000376636 KMT2BQ9UMN6 2715 aaPredicted RBP7.09□□□□□ -1.27
VPS13A-205ENST00000376636 CYSTM1Q9H1C7 97 aa7.08□□□□□ -1.28
VPS13A-205ENST00000376636 SPRR1AP35321 89 aa7.07□□□□□ -1.28
VPS13A-205ENST00000376636 ADM2Q7Z4H4 148 aa7.05□□□□□ -1.28
VPS13A-205ENST00000376636 KRTAP10-3P60369 221 aa7.05□□□□□ -1.28
VPS13A-205ENST00000376636 C20orf166-AS1Q96NR2 134 aa7.04□□□□□ -1.28
VPS13A-205ENST00000376636 Q6ZR54 194 aa7.04□□□□□ -1.28
VPS13A-205ENST00000376636 SPRR1BP22528 89 aa7.04□□□□□ -1.28
VPS13A-205ENST00000376636 PANO1I0J062 215 aa7.02□□□□□ -1.29
VPS13A-205ENST00000376636 PCNTO95613 3336 aa7.01□□□□□ -1.29
VPS13A-205ENST00000376636 KRTAP25-1Q3LHN0 102 aa7.01□□□□□ -1.29
VPS13A-205ENST00000376636 Q8NDZ9 215 aa7.01□□□□□ -1.29
VPS13A-205ENST00000376636 BAHCC1Q9P281 2608 aa7□□□□□ -1.29
VPS13A-205ENST00000376636 SPATA8Q6RVD6 105 aa6.99□□□□□ -1.29
VPS13A-205ENST00000376636 KRTAP26-1Q6PEX3 210 aa6.97□□□□□ -1.29
VPS13A-205ENST00000376636 UTRNP46939 3433 aa6.96□□□□□ -1.29
VPS13A-205ENST00000376636 DNAH12Q6ZR08 3092 aa6.96□□□□□ -1.3
VPS13A-205ENST00000376636 TEP1Q99973 2627 aaKnown RBP6.95□□□□□ -1.3
VPS13A-205ENST00000376636 APCP25054 2843 aa6.94□□□□□ -1.3
VPS13A-205ENST00000376636 NDUFAF8A1L188 74 aa6.93□□□□□ -1.3
VPS13A-205ENST00000376636 OXTP01178 125 aa6.92□□□□□ -1.3
VPS13A-205ENST00000376636 ITPR2Q14571 2701 aa6.9□□□□□ -1.3
VPS13A-205ENST00000376636 Q5VSD8 79 aa6.9□□□□□ -1.31
VPS13A-205ENST00000376636 A6NN06 94 aa6.89□□□□□ -1.31
VPS13A-205ENST00000376636 CFAP54Q96N23 3096 aa6.87□□□□□ -1.31
VPS13A-205ENST00000376636 NSD1Q96L73 2696 aaPredicted RBP6.86□□□□□ -1.31
VPS13A-205ENST00000376636 C5orf42Q9H799 3197 aa6.86□□□□□ -1.31
VPS13A-205ENST00000376636 MAP1AP78559 2803 aaPredicted RBP6.84□□□□□ -1.31
VPS13A-205ENST00000376636 A8MUU9 505 aa6.83□□□□□ -1.32
VPS13A-205ENST00000376636 IGSF10Q6WRI0 2623 aa6.82□□□□□ -1.32
VPS13A-205ENST00000376636 ZNF292O60281 2723 aa6.82□□□□□ -1.32
VPS13A-205ENST00000376636 A0A087X002 238 aa6.81□□□□□ -1.32
VPS13A-205ENST00000376636 SETXQ7Z333 2677 aaKnown RBP6.81□□□□□ -1.32
VPS13A-205ENST00000376636 UTP20O75691 2785 aaKnown RBP6.81□□□□□ -1.32
VPS13A-205ENST00000376636 A0A0C4DFX4 3053 aa6.81□□□□□ -1.32
VPS13A-205ENST00000376636 KRTAP29-1A8MX34 341 aaPredicted RBP6.78□□□□□ -1.32
VPS13A-205ENST00000376636 NBEAL2Q6ZNJ1 2754 aa6.78□□□□□ -1.32
VPS13A-205ENST00000376636 TNP1P09430 55 aa6.78□□□□□ -1.32
VPS13A-205ENST00000376636 C10orf95Q9H7T3 257 aa6.78□□□□□ -1.32
VPS13A-205ENST00000376636 RPS29P62273 56 aaKnown RBP6.77□□□□□ -1.33
VPS13A-205ENST00000376636 KRTAP1-3Q8IUG1 177 aa6.76□□□□□ -1.33
VPS13A-205ENST00000376636 KRTAP1-1Q07627 177 aa6.73□□□□□ -1.33
VPS13A-205ENST00000376636 PP632Q6XCG6 107 aa6.73□□□□□ -1.33
VPS13A-205ENST00000376636 A8MU10 97 aa6.7□□□□□ -1.34
VPS13A-205ENST00000376636 UBR5O95071 2799 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-205ENST00000376636 KRTAP4-16G5E9R7 235 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-205ENST00000376636 ITPR1Q14643 2758 aa6.69□□□□□ -1.34
VPS13A-205ENST00000376636 LAMA2P24043 3122 aaKnown RBP6.68□□□□□ -1.34
VPS13A-205ENST00000376636 KRTAP1-5Q9BYS1 174 aa6.66□□□□□ -1.34
VPS13A-205ENST00000376636 KRTAP10-1P60331 282 aa6.65□□□□□ -1.34
VPS13A-205ENST00000376636 LCE6AA0A183 80 aa6.63□□□□□ -1.35
VPS13A-205ENST00000376636 NOTCH2NLQ7Z3S9 236 aa6.62□□□□□ -1.35
VPS13A-205ENST00000376636 KRTAP11-1Q8IUC1 163 aa6.62□□□□□ -1.35
VPS13A-205ENST00000376636 KRTAP10-2P60368 255 aa6.61□□□□□ -1.35
VPS13A-205ENST00000376636 REV3LO60673 3130 aa6.58□□□□□ -1.36
VPS13A-205ENST00000376636 TRANK1O15050 2925 aa6.56□□□□□ -1.36
VPS13A-205ENST00000376636 DSPP15924 2871 aaKnown RBP6.56□□□□□ -1.36
VPS13A-205ENST00000376636 XIRP2A4UGR9 3374 aa6.54□□□□□ -1.36
VPS13A-205ENST00000376636 LRBAP50851 2863 aa6.54□□□□□ -1.36
VPS13A-205ENST00000376636 MGAQ8IWI9 3026 aa6.54□□□□□ -1.36
VPS13A-205ENST00000376636 FRYQ5TBA9 3013 aa6.51□□□□□ -1.37
VPS13A-205ENST00000376636 UNC80Q8N2C7 3258 aa6.47□□□□□ -1.37
VPS13A-205ENST00000376636 FRYLO94915 3013 aa6.47□□□□□ -1.37
VPS13A-205ENST00000376636 MKI67P46013 3256 aaKnown RBP6.46□□□□□ -1.37
VPS13A-205ENST00000376636 Q6ZRN7 208 aaPredicted RBP6.46□□□□□ -1.37
VPS13A-205ENST00000376636 TRIOO75962 3097 aa6.45□□□□□ -1.38
VPS13A-205ENST00000376636 FREM2Q5SZK8 3169 aa6.44□□□□□ -1.38
VPS13A-205ENST00000376636 ASH1LQ9NR48 2969 aaKnown RBP6.43□□□□□ -1.38
VPS13A-205ENST00000376636 P0C880 135 aa6.42□□□□□ -1.38
VPS13A-205ENST00000376636 KALRNO60229 2985 aa6.42□□□□□ -1.38
VPS13A-205ENST00000376636 VPS13AQ96RL7 3174 aa6.42□□□□□ -1.38
VPS13A-205ENST00000376636 KRTAP10-8P60410 259 aa6.4□□□□□ -1.38
VPS13A-205ENST00000376636 CELSR3Q9NYQ7 3312 aa6.4□□□□□ -1.38
VPS13A-205ENST00000376636 WDFY4Q6ZS81 3184 aa6.39□□□□□ -1.39
VPS13A-205ENST00000376636 PRO2289Q9P1D8 64 aa6.38□□□□□ -1.39
VPS13A-205ENST00000376636 TENM3Q9P273 2699 aa6.36□□□□□ -1.39
VPS13A-205ENST00000376636 HIVEP1P15822 2718 aa6.33□□□□□ -1.4
VPS13A-205ENST00000376636 KRTAP13-2Q52LG2 175 aa6.33□□□□□ -1.4
VPS13A-205ENST00000376636 TENM1Q9UKZ4 2725 aa6.31□□□□□ -1.4
VPS13A-205ENST00000376636 KRTAP13-1Q8IUC0 172 aa6.31□□□□□ -1.4
VPS13A-205ENST00000376636 CHD7Q9P2D1 2997 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms