RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 SPINK7P58062 85 aa5.93□□□□□ -1.46
COL4A6-202ENST00000372216 H1FX-AS1Q4G0G2 97 aa5.92□□□□□ -1.46
COL4A6-202ENST00000372216 KRTAP26-1Q6PEX3 210 aa5.92□□□□□ -1.46
COL4A6-202ENST00000372216 MGAM2Q2M2H8 2515 aa5.92□□□□□ -1.46
COL4A6-202ENST00000372216 OCR1Q9BZK8 76 aa5.91□□□□□ -1.46
COL4A6-202ENST00000372216 MKI67P46013 3256 aaKnown RBP5.9□□□□□ -1.46
COL4A6-202ENST00000372216 MMP24-AS1A0A0U1RRL7 71 aa5.9□□□□□ -1.47
COL4A6-202ENST00000372216 PRAC1Q96KF2 57 aa5.9□□□□□ -1.47
COL4A6-202ENST00000372216 ADM2Q7Z4H4 148 aa5.89□□□□□ -1.47
COL4A6-202ENST00000372216 TRANK1O15050 2925 aa5.88□□□□□ -1.47
COL4A6-202ENST00000372216 SPRR1BP22528 89 aa5.87□□□□□ -1.47
COL4A6-202ENST00000372216 DMAC1Q96GE9 116 aa5.87□□□□□ -1.47
COL4A6-202ENST00000372216 Q5W150 140 aa5.87□□□□□ -1.47
COL4A6-202ENST00000372216 CFAP46Q8IYW2 2715 aa5.87□□□□□ -1.47
COL4A6-202ENST00000372216 USP24Q9UPU5 2620 aa5.86□□□□□ -1.47
COL4A6-202ENST00000372216 RANBP2P49792 3224 aaKnown RBP5.86□□□□□ -1.47
COL4A6-202ENST00000372216 LAMA3Q16787 3333 aa5.85□□□□□ -1.47
COL4A6-202ENST00000372216 ATRQ13535 2644 aa5.84□□□□□ -1.47
COL4A6-202ENST00000372216 Q6ZR54 194 aa5.83□□□□□ -1.48
COL4A6-202ENST00000372216 Q5XG85 94 aa5.83□□□□□ -1.48
COL4A6-202ENST00000372216 LINC00472Q9H8W2 130 aa5.83□□□□□ -1.48
COL4A6-202ENST00000372216 PANO1I0J062 215 aa5.83□□□□□ -1.48
COL4A6-202ENST00000372216 SPATA8Q6RVD6 105 aa5.83□□□□□ -1.48
COL4A6-202ENST00000372216 MAST4O15021 2626 aa5.8□□□□□ -1.48
COL4A6-202ENST00000372216 BRCA2P51587 3418 aa5.79□□□□□ -1.48
COL4A6-202ENST00000372216 AKAP13Q12802 2813 aa5.78□□□□□ -1.48
COL4A6-202ENST00000372216 MGAQ8IWI9 3026 aa5.78□□□□□ -1.48
COL4A6-202ENST00000372216 A0A0A0MQY5 61 aa5.77□□□□□ -1.49
COL4A6-202ENST00000372216 OXTP01178 125 aa5.77□□□□□ -1.49
COL4A6-202ENST00000372216 Q75L30 129 aa5.75□□□□□ -1.49
COL4A6-202ENST00000372216 FP248Q71RG6 208 aaPredicted RBP5.75□□□□□ -1.49
COL4A6-202ENST00000372216 ZNF292O60281 2723 aa5.75□□□□□ -1.49
COL4A6-202ENST00000372216 A0A087X002 238 aa5.72□□□□□ -1.49
COL4A6-202ENST00000372216 ROMO1P60602 79 aa5.72□□□□□ -1.49
COL4A6-202ENST00000372216 KRTAP4-16G5E9R7 235 aaPredicted RBP5.71□□□□□ -1.5
COL4A6-202ENST00000372216 RPL37P61927 97 aaKnown RBP5.71□□□□□ -1.5
COL4A6-202ENST00000372216 C20orf166-AS1Q96NR2 134 aa5.71□□□□□ -1.5
COL4A6-202ENST00000372216 PRUNE2Q8WUY3 3088 aa5.7□□□□□ -1.5
COL4A6-202ENST00000372216 CDH23Q9H251 3354 aa5.7□□□□□ -1.5
COL4A6-202ENST00000372216 Q6ZRN7 208 aaPredicted RBP5.69□□□□□ -1.5
COL4A6-202ENST00000372216 LINC01558Q9Y6Z2 57 aa5.68□□□□□ -1.5
COL4A6-202ENST00000372216 CFAP54Q96N23 3096 aa5.68□□□□□ -1.5
COL4A6-202ENST00000372216 CYSTM1Q9H1C7 97 aa5.67□□□□□ -1.5
COL4A6-202ENST00000372216 KRTAP21-3Q3LHN1 58 aa5.67□□□□□ -1.5
COL4A6-202ENST00000372216 KRTAP11-1Q8IUC1 163 aa5.66□□□□□ -1.5
COL4A6-202ENST00000372216 Q5VV11 94 aa5.65□□□□□ -1.5
COL4A6-202ENST00000372216 UNC80Q8N2C7 3258 aa5.64□□□□□ -1.51
COL4A6-202ENST00000372216 WDFY4Q6ZS81 3184 aa5.64□□□□□ -1.51
COL4A6-202ENST00000372216 CENPEQ02224 2701 aa5.64□□□□□ -1.51
COL4A6-202ENST00000372216 IGSF10Q6WRI0 2623 aa5.64□□□□□ -1.51
COL4A6-202ENST00000372216 TEX15Q9BXT5 2789 aa5.63□□□□□ -1.51
COL4A6-202ENST00000372216 A0A1B0GVY2 172 aa5.63□□□□□ -1.51
COL4A6-202ENST00000372216 BAHCC1Q9P281 2608 aa5.63□□□□□ -1.51
COL4A6-202ENST00000372216 TRIOO75962 3097 aa5.62□□□□□ -1.51
COL4A6-202ENST00000372216 A8MUU9 505 aa5.62□□□□□ -1.51
COL4A6-202ENST00000372216 KRTAP16-1A8MUX0 517 aa5.62□□□□□ -1.51
COL4A6-202ENST00000372216 XIRP2A4UGR9 3374 aa5.61□□□□□ -1.51
COL4A6-202ENST00000372216 TEP1Q99973 2627 aaKnown RBP5.61□□□□□ -1.51
COL4A6-202ENST00000372216 A8MU10 97 aa5.6□□□□□ -1.51
COL4A6-202ENST00000372216 LAMA2P24043 3122 aaKnown RBP5.59□□□□□ -1.52
COL4A6-202ENST00000372216 DSPP15924 2871 aaKnown RBP5.58□□□□□ -1.52
COL4A6-202ENST00000372216 RPS29P62273 56 aaKnown RBP5.58□□□□□ -1.52
COL4A6-202ENST00000372216 KRTAP7-1Q8IUC3 87 aa5.58□□□□□ -1.52
COL4A6-202ENST00000372216 NOTCH2NLQ7Z3S9 236 aa5.58□□□□□ -1.52
COL4A6-202ENST00000372216 SZT2Q5T011 3432 aa5.57□□□□□ -1.52
COL4A6-202ENST00000372216 CHD6Q8TD26 2715 aa5.56□□□□□ -1.52
COL4A6-202ENST00000372216 UNC79Q9P2D8 2635 aa5.56□□□□□ -1.52
COL4A6-202ENST00000372216 KRTAP29-1A8MX34 341 aaPredicted RBP5.55□□□□□ -1.52
COL4A6-202ENST00000372216 KRTAP13-2Q52LG2 175 aa5.55□□□□□ -1.52
COL4A6-202ENST00000372216 ASB16-AS1Q495Z4 193 aa5.55□□□□□ -1.52
COL4A6-202ENST00000372216 COL6A5A8TX70 2615 aa5.53□□□□□ -1.52
COL4A6-202ENST00000372216 A0A0C4DFX4 3053 aa5.52□□□□□ -1.53
COL4A6-202ENST00000372216 KRTAP13-1Q8IUC0 172 aa5.51□□□□□ -1.53
COL4A6-202ENST00000372216 C10orf95Q9H7T3 257 aa5.51□□□□□ -1.53
COL4A6-202ENST00000372216 DNAH14Q0VDD8 3507 aa5.49□□□□□ -1.53
COL4A6-202ENST00000372216 SETXQ7Z333 2677 aaKnown RBP5.49□□□□□ -1.53
COL4A6-202ENST00000372216 CELSR3Q9NYQ7 3312 aa5.49□□□□□ -1.53
COL4A6-202ENST00000372216 SPTBN5Q9NRC6 3674 aaKnown RBP5.49□□□□□ -1.53
COL4A6-202ENST00000372216 GCN1Q92616 2671 aaKnown RBP5.49□□□□□ -1.53
COL4A6-202ENST00000372216 ITPR2Q14571 2701 aa5.47□□□□□ -1.53
COL4A6-202ENST00000372216 VPS13AQ96RL7 3174 aa5.47□□□□□ -1.53
COL4A6-202ENST00000372216 STAB1Q9NY15 2570 aa5.47□□□□□ -1.53
COL4A6-202ENST00000372216 KRTAP10-8P60410 259 aa5.46□□□□□ -1.53
COL4A6-202ENST00000372216 USP34Q70CQ2 3546 aa5.46□□□□□ -1.54
COL4A6-202ENST00000372216 COL6A3P12111 3177 aa5.45□□□□□ -1.54
COL4A6-202ENST00000372216 FRYQ5TBA9 3013 aa5.44□□□□□ -1.54
COL4A6-202ENST00000372216 NBEAL1Q6ZS30 2694 aa5.44□□□□□ -1.54
COL4A6-202ENST00000372216 TNRC18O15417 2968 aaPredicted RBP5.43□□□□□ -1.54
COL4A6-202ENST00000372216 KMT2BQ9UMN6 2715 aaPredicted RBP5.42□□□□□ -1.54
COL4A6-202ENST00000372216 NBEAL2Q6ZNJ1 2754 aa5.41□□□□□ -1.54
COL4A6-202ENST00000372216 VCANP13611 3396 aa5.41□□□□□ -1.54
COL4A6-202ENST00000372216 LAMA1P25391 3075 aa5.4□□□□□ -1.54
COL4A6-202ENST00000372216 NOTCH1P46531 2555 aa5.4□□□□□ -1.54
COL4A6-202ENST00000372216 TNP1P09430 55 aa5.4□□□□□ -1.55
COL4A6-202ENST00000372216 FREM2Q5SZK8 3169 aa5.39□□□□□ -1.55
COL4A6-202ENST00000372216 NDUFAF8A1L188 74 aa5.38□□□□□ -1.55
COL4A6-202ENST00000372216 FLG2Q5D862 2391 aaPredicted RBP5.38□□□□□ -1.55
COL4A6-202ENST00000372216 A6NN06 94 aa5.37□□□□□ -1.55
COL4A6-202ENST00000372216 LRBAP50851 2863 aa5.35□□□□□ -1.55
COL4A6-202ENST00000372216 KRTAP25-1Q3LHN0 102 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms