RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 KRTAP26-1Q6PEX3 210 aa5.59□□□□□ -1.51
SYNE1-205ENST00000367251 CR1P17927 2039 aa5.59□□□□□ -1.52
SYNE1-205ENST00000367251 EYSQ5T1H1 3165 aa5.59□□□□□ -1.52
SYNE1-205ENST00000367251 MMP24-AS1A0A0U1RRL7 71 aa5.58□□□□□ -1.52
SYNE1-205ENST00000367251 STAB2Q8WWQ8 2551 aa5.58□□□□□ -1.52
SYNE1-205ENST00000367251 NOTCH1P46531 2555 aa5.58□□□□□ -1.52
SYNE1-205ENST00000367251 ITPR3Q14573 2671 aa5.58□□□□□ -1.52
SYNE1-205ENST00000367251 S4R3F8 94 aa5.57□□□□□ -1.52
SYNE1-205ENST00000367251 Q5XG85 94 aa5.57□□□□□ -1.52
SYNE1-205ENST00000367251 MKI67P46013 3256 aaKnown RBP5.57□□□□□ -1.52
SYNE1-205ENST00000367251 SPTBN5Q9NRC6 3674 aaKnown RBP5.57□□□□□ -1.52
SYNE1-205ENST00000367251 LINC01558Q9Y6Z2 57 aa5.56□□□□□ -1.52
SYNE1-205ENST00000367251 LINC00472Q9H8W2 130 aa5.55□□□□□ -1.52
SYNE1-205ENST00000367251 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-205ENST00000367251 A0A1B0GU33 70 aa5.55□□□□□ -1.52
SYNE1-205ENST00000367251 XIRP2A4UGR9 3374 aa5.54□□□□□ -1.52
SYNE1-205ENST00000367251 CDH23Q9H251 3354 aa5.53□□□□□ -1.52
SYNE1-205ENST00000367251 MYO15AQ9UKN7 3530 aa5.53□□□□□ -1.52
SYNE1-205ENST00000367251 HELZ2Q9BYK8 2649 aaKnown RBP5.53□□□□□ -1.52
SYNE1-205ENST00000367251 Q8N9P0 234 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-205ENST00000367251 CYSTM1Q9H1C7 97 aa5.51□□□□□ -1.53
SYNE1-205ENST00000367251 FP248Q71RG6 208 aaPredicted RBP5.51□□□□□ -1.53
SYNE1-205ENST00000367251 UNC80Q8N2C7 3258 aa5.5□□□□□ -1.53
SYNE1-205ENST00000367251 CHD9Q3L8U1 2897 aa5.5□□□□□ -1.53
SYNE1-205ENST00000367251 LCE6AA0A183 80 aa5.5□□□□□ -1.53
SYNE1-205ENST00000367251 CHD7Q9P2D1 2997 aa5.49□□□□□ -1.53
SYNE1-205ENST00000367251 H1FX-AS1Q4G0G2 97 aa5.49□□□□□ -1.53
SYNE1-205ENST00000367251 CFAP46Q8IYW2 2715 aa5.49□□□□□ -1.53
SYNE1-205ENST00000367251 KRTAP4-16G5E9R7 235 aaPredicted RBP5.48□□□□□ -1.53
SYNE1-205ENST00000367251 A0A0A0MQY5 61 aa5.48□□□□□ -1.53
SYNE1-205ENST00000367251 OXTP01178 125 aa5.48□□□□□ -1.53
SYNE1-205ENST00000367251 VCANP13611 3396 aa5.48□□□□□ -1.53
SYNE1-205ENST00000367251 ZCCHC13Q8WW36 166 aaKnown RBP5.47□□□□□ -1.53
SYNE1-205ENST00000367251 DMDP11532 3685 aa5.47□□□□□ -1.53
SYNE1-205ENST00000367251 TEP1Q99973 2627 aaKnown RBP5.46□□□□□ -1.54
SYNE1-205ENST00000367251 M0QZ58 72 aa5.46□□□□□ -1.54
SYNE1-205ENST00000367251 SPINK7P58062 85 aa5.45□□□□□ -1.54
SYNE1-205ENST00000367251 DNAH14Q0VDD8 3507 aa5.45□□□□□ -1.54
SYNE1-205ENST00000367251 MUC3AQ02505 3323 aa5.44□□□□□ -1.54
SYNE1-205ENST00000367251 DMAC1Q96GE9 116 aa5.44□□□□□ -1.54
SYNE1-205ENST00000367251 Q5VV11 94 aa5.44□□□□□ -1.54
SYNE1-205ENST00000367251 Q5W150 140 aa5.44□□□□□ -1.54
SYNE1-205ENST00000367251 TRANK1O15050 2925 aa5.43□□□□□ -1.54
SYNE1-205ENST00000367251 SZT2Q5T011 3432 aa5.42□□□□□ -1.54
SYNE1-205ENST00000367251 KRTAP1-5Q9BYS1 174 aa5.42□□□□□ -1.54
SYNE1-205ENST00000367251 Q6ZR54 194 aa5.42□□□□□ -1.54
SYNE1-205ENST00000367251 SPENQ96T58 3664 aaKnown RBP5.42□□□□□ -1.54
SYNE1-205ENST00000367251 KRTAP29-1A8MX34 341 aaPredicted RBP5.41□□□□□ -1.54
SYNE1-205ENST00000367251 COL6A5A8TX70 2615 aa5.4□□□□□ -1.55
SYNE1-205ENST00000367251 PRUNE2Q8WUY3 3088 aa5.4□□□□□ -1.55
SYNE1-205ENST00000367251 NBEAL1Q6ZS30 2694 aa5.39□□□□□ -1.55
SYNE1-205ENST00000367251 UNC79Q9P2D8 2635 aa5.39□□□□□ -1.55
SYNE1-205ENST00000367251 FLNAP21333 2647 aaKnown RBP5.38□□□□□ -1.55
SYNE1-205ENST00000367251 ASB16-AS1Q495Z4 193 aa5.36□□□□□ -1.55
SYNE1-205ENST00000367251 PRRC2CQ9Y520 2896 aaKnown RBP5.36□□□□□ -1.55
SYNE1-205ENST00000367251 KRTAP10-1P60331 282 aa5.33□□□□□ -1.56
SYNE1-205ENST00000367251 SPEGQ15772 3267 aa5.33□□□□□ -1.56
SYNE1-205ENST00000367251 CFAP54Q96N23 3096 aa5.32□□□□□ -1.56
SYNE1-205ENST00000367251 C5orf42Q9H799 3197 aa5.3□□□□□ -1.56
SYNE1-205ENST00000367251 AKAP13Q12802 2813 aa5.29□□□□□ -1.56
SYNE1-205ENST00000367251 RPL37P61927 97 aaKnown RBP5.29□□□□□ -1.56
SYNE1-205ENST00000367251 RPS29P62273 56 aaKnown RBP5.29□□□□□ -1.56
SYNE1-205ENST00000367251 KRTAP10-2P60368 255 aa5.29□□□□□ -1.56
SYNE1-205ENST00000367251 ADM2Q7Z4H4 148 aa5.29□□□□□ -1.56
SYNE1-205ENST00000367251 IGSF10Q6WRI0 2623 aa5.29□□□□□ -1.56
SYNE1-205ENST00000367251 TEX15Q9BXT5 2789 aa5.28□□□□□ -1.56
SYNE1-205ENST00000367251 RANBP2P49792 3224 aaKnown RBP5.26□□□□□ -1.57
SYNE1-205ENST00000367251 PANO1I0J062 215 aa5.26□□□□□ -1.57
SYNE1-205ENST00000367251 CENPEQ02224 2701 aa5.25□□□□□ -1.57
SYNE1-205ENST00000367251 ZNF292O60281 2723 aa5.24□□□□□ -1.57
SYNE1-205ENST00000367251 Q6ZRN7 208 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-205ENST00000367251 KRTAP7-1Q8IUC3 87 aa5.24□□□□□ -1.57
SYNE1-205ENST00000367251 KRTAP13-1Q8IUC0 172 aa5.23□□□□□ -1.57
SYNE1-205ENST00000367251 KMT2BQ9UMN6 2715 aaPredicted RBP5.23□□□□□ -1.57
SYNE1-205ENST00000367251 C20orf166-AS1Q96NR2 134 aa5.22□□□□□ -1.57
SYNE1-205ENST00000367251 SPATA8Q6RVD6 105 aa5.21□□□□□ -1.58
SYNE1-205ENST00000367251 ROMO1P60602 79 aa5.21□□□□□ -1.58
SYNE1-205ENST00000367251 PRAC1Q96KF2 57 aa5.2□□□□□ -1.58
SYNE1-205ENST00000367251 KRTAP11-1Q8IUC1 163 aa5.19□□□□□ -1.58
SYNE1-205ENST00000367251 TNRC18O15417 2968 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-205ENST00000367251 A0A087X002 238 aa5.17□□□□□ -1.58
SYNE1-205ENST00000367251 NOTCH2NLQ7Z3S9 236 aa5.15□□□□□ -1.58
SYNE1-205ENST00000367251 ZFHX4Q86UP3 3567 aa5.15□□□□□ -1.59
SYNE1-205ENST00000367251 LAMA1P25391 3075 aa5.14□□□□□ -1.59
SYNE1-205ENST00000367251 A8MUU9 505 aa5.13□□□□□ -1.59
SYNE1-205ENST00000367251 A6NN06 94 aa5.13□□□□□ -1.59
SYNE1-205ENST00000367251 ASPMQ8IZT6 3477 aa5.12□□□□□ -1.59
SYNE1-205ENST00000367251 TRIOO75962 3097 aa5.12□□□□□ -1.59
SYNE1-205ENST00000367251 CHD6Q8TD26 2715 aa5.12□□□□□ -1.59
SYNE1-205ENST00000367251 FRYLO94915 3013 aa5.11□□□□□ -1.59
SYNE1-205ENST00000367251 MGAQ8IWI9 3026 aa5.09□□□□□ -1.59
SYNE1-205ENST00000367251 KRTAP13-2Q52LG2 175 aa5.09□□□□□ -1.6
SYNE1-205ENST00000367251 BSNQ9UPA5 3926 aa5.07□□□□□ -1.6
SYNE1-205ENST00000367251 TNP1P09430 55 aa5.06□□□□□ -1.6
SYNE1-205ENST00000367251 VPS13AQ96RL7 3174 aa5.04□□□□□ -1.6
SYNE1-205ENST00000367251 A0A0C4DFX4 3053 aa5.04□□□□□ -1.6
SYNE1-205ENST00000367251 COL6A3P12111 3177 aa5.04□□□□□ -1.6
SYNE1-205ENST00000367251 KRTAP10-8P60410 259 aa5.03□□□□□ -1.6
SYNE1-205ENST00000367251 FREM2Q5SZK8 3169 aa5.03□□□□□ -1.6
SYNE1-205ENST00000367251 GCN1Q92616 2671 aaKnown RBP5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms