RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.64□□□□□ -0.87
CLN3-203ENST00000357806 H0YGX0 51 aa9.63□□□□□ -0.87
CLN3-203ENST00000357806 SNCGO76070 127 aa9.62□□□□□ -0.87
CLN3-203ENST00000357806 TPRXLQ17RH7 258 aa9.62□□□□□ -0.87
CLN3-203ENST00000357806 F8WEM9 126 aa9.61□□□□□ -0.87
CLN3-203ENST00000357806 LIMD2Q9BT23 127 aa9.61□□□□□ -0.87
CLN3-203ENST00000357806 CD164Q04900 197 aa9.6□□□□□ -0.87
CLN3-203ENST00000357806 HRCT1Q6UXD1 115 aa9.6□□□□□ -0.87
CLN3-203ENST00000357806 PPDPFLQ8WWR9 84 aa9.59□□□□□ -0.87
CLN3-203ENST00000357806 PCP4L1A6NKN8 68 aa9.58□□□□□ -0.88
CLN3-203ENST00000357806 K7ERJ3 54 aa9.57□□□□□ -0.88
CLN3-203ENST00000357806 FAM218AQ96MZ4 157 aa9.57□□□□□ -0.88
CLN3-203ENST00000357806 TRIAP1O43715 76 aa9.56□□□□□ -0.88
CLN3-203ENST00000357806 OCIAD2Q56VL3 154 aa9.56□□□□□ -0.88
CLN3-203ENST00000357806 CDIP1Q9H305 208 aa9.56□□□□□ -0.88
CLN3-203ENST00000357806 A0A1B0GX51 115 aa9.55□□□□□ -0.88
CLN3-203ENST00000357806 PSMB2P49721 201 aa9.53□□□□□ -0.88
CLN3-203ENST00000357806 SNHG12Q9BXW3 62 aa9.53□□□□□ -0.88
CLN3-203ENST00000357806 A0A0G2JQZ4 141 aa9.53□□□□□ -0.88
CLN3-203ENST00000357806 Q6JHZ5 121 aa9.53□□□□□ -0.88
CLN3-203ENST00000357806 IGLV8-61A0A075B6I0 122 aa9.52□□□□□ -0.89
CLN3-203ENST00000357806 GHRHP01286 108 aa9.52□□□□□ -0.89
CLN3-203ENST00000357806 COX6CP09669 75 aa9.51□□□□□ -0.89
CLN3-203ENST00000357806 CLEC2BQ92478 149 aa9.51□□□□□ -0.89
CLN3-203ENST00000357806 KRTAP13-3Q3SY46 172 aa9.5□□□□□ -0.89
CLN3-203ENST00000357806 Q5XG85 94 aa9.5□□□□□ -0.89
CLN3-203ENST00000357806 DNAL4O96015 105 aa9.48□□□□□ -0.89
CLN3-203ENST00000357806 IGFL1Q6UW32 110 aa9.48□□□□□ -0.89
CLN3-203ENST00000357806 M0R143 59 aa9.47□□□□□ -0.89
CLN3-203ENST00000357806 H3BUT2 72 aa9.45□□□□□ -0.9
CLN3-203ENST00000357806 NDUFV3P56181 108 aaKnown RBP9.45□□□□□ -0.9
CLN3-203ENST00000357806 TCL1BO95988 128 aa9.44□□□□□ -0.9
CLN3-203ENST00000357806 FABP2P12104 132 aa9.43□□□□□ -0.9
CLN3-203ENST00000357806 ORMDL1Q9P0S3 153 aa9.43□□□□□ -0.9
CLN3-203ENST00000357806 RNF213Q63HN8 5207 aa9.43□□□□□ -0.9
CLN3-203ENST00000357806 TRBV7-7A0A0K0K1E9 115 aa9.42□□□□□ -0.9
CLN3-203ENST00000357806 H3BQ85 93 aa9.41□□□□□ -0.9
CLN3-203ENST00000357806 SCGB1C2P0DMR2 95 aa9.4□□□□□ -0.9
CLN3-203ENST00000357806 C1orf195Q5TG92 126 aa9.4□□□□□ -0.9
CLN3-203ENST00000357806 H3BMG7 143 aa9.39□□□□□ -0.91
CLN3-203ENST00000357806 TMEM256-PLSCR3K7ERE1 68 aa9.38□□□□□ -0.91
CLN3-203ENST00000357806 TRACP01848 142 aa9.38□□□□□ -0.91
CLN3-203ENST00000357806 LST1O00453 97 aa9.37□□□□□ -0.91
CLN3-203ENST00000357806 ASB16-AS1Q495Z4 193 aa9.37□□□□□ -0.91
CLN3-203ENST00000357806 MUC17Q685J3 4493 aa9.37□□□□□ -0.91
CLN3-203ENST00000357806 BATFQ16520 125 aa9.36□□□□□ -0.91
CLN3-203ENST00000357806 Q6Q795 121 aa9.36□□□□□ -0.91
CLN3-203ENST00000357806 TEN1Q86WV5 123 aa9.35□□□□□ -0.91
CLN3-203ENST00000357806 XP32Q5T750 250 aa9.34□□□□□ -0.91
CLN3-203ENST00000357806 C9orf92A6NGG3 77 aa9.33□□□□□ -0.92
CLN3-203ENST00000357806 SS18L2Q9UHA2 77 aa9.33□□□□□ -0.92
CLN3-203ENST00000357806 UBE2V1Q13404 147 aa9.32□□□□□ -0.92
CLN3-203ENST00000357806 SEC61BP60468 96 aaKnown RBP9.31□□□□□ -0.92
CLN3-203ENST00000357806 A0A1B0GV72 72 aa9.3□□□□□ -0.92
CLN3-203ENST00000357806 NAA38Q9BRA0 125 aaKnown RBP9.3□□□□□ -0.92
CLN3-203ENST00000357806 MUC2Q02817 5179 aa9.29□□□□□ -0.92
CLN3-203ENST00000357806 ANKRD29Q8N6D5 301 aa9.29□□□□□ -0.92
CLN3-203ENST00000357806 ATXN8Q156A1 80 aa9.28□□□□□ -0.92
CLN3-203ENST00000357806 LYRM7Q5U5X0 104 aa9.28□□□□□ -0.92
CLN3-203ENST00000357806 A0A087WSZ3 146 aa9.28□□□□□ -0.92
CLN3-203ENST00000357806 A0A0U1RQV1 116 aa9.27□□□□□ -0.93
CLN3-203ENST00000357806 A0A1W2PNM2 257 aa9.26□□□□□ -0.93
CLN3-203ENST00000357806 COL5A1-AS1Q5SY13 56 aa9.25□□□□□ -0.93
CLN3-203ENST00000357806 TRBV7-4A0A0J9YYF1 115 aa9.24□□□□□ -0.93
CLN3-203ENST00000357806 BAALC-AS2P0C853 105 aa9.24□□□□□ -0.93
CLN3-203ENST00000357806 RBM3P98179 157 aaKnown RBP9.22□□□□□ -0.93
CLN3-203ENST00000357806 CCKP06307 115 aa9.21□□□□□ -0.93
CLN3-203ENST00000357806 TRBV20-1A0A075B6N2 111 aa9.21□□□□□ -0.94
CLN3-203ENST00000357806 DSCR8Q96T75 97 aa9.21□□□□□ -0.94
CLN3-203ENST00000357806 C9orf118A6NHY6 69 aa9.18□□□□□ -0.94
CLN3-203ENST00000357806 Q96NJ1 140 aa9.18□□□□□ -0.94
CLN3-203ENST00000357806 TAX1BP3O14907 124 aa9.16□□□□□ -0.94
CLN3-203ENST00000357806 VPS25Q9BRG1 176 aa9.16□□□□□ -0.94
CLN3-203ENST00000357806 JMJD7-PLA2G4BH0Y9G9 81 aa9.15□□□□□ -0.94
CLN3-203ENST00000357806 RPL37P61927 97 aaKnown RBP9.15□□□□□ -0.94
CLN3-203ENST00000357806 C9JAW5 83 aa9.15□□□□□ -0.95
CLN3-203ENST00000357806 PCOTHQ58A44 107 aa9.15□□□□□ -0.95
CLN3-203ENST00000357806 A0A1W2PPM0 123 aa9.14□□□□□ -0.95
CLN3-203ENST00000357806 OBSCN-AS1Q96MR7 158 aa9.14□□□□□ -0.95
CLN3-203ENST00000357806 SIGMAR1Q99720 223 aa9.13□□□□□ -0.95
CLN3-203ENST00000357806 KRTAP4-1Q9BYQ7 146 aa9.13□□□□□ -0.95
CLN3-203ENST00000357806 C21orf62-AS1Q17RA5 79 aa9.1□□□□□ -0.95
CLN3-203ENST00000357806 IGKV4-1P06312 121 aa9.09□□□□□ -0.95
CLN3-203ENST00000357806 LOC110117498A0A087WWA1 95 aa9.08□□□□□ -0.96
CLN3-203ENST00000357806 Q6ZQT0 140 aa9.08□□□□□ -0.96
CLN3-203ENST00000357806 LINC00472Q9H8W2 130 aa9.08□□□□□ -0.96
CLN3-203ENST00000357806 H3BT86 120 aa9.07□□□□□ -0.96
CLN3-203ENST00000357806 PDE6GP18545 87 aa9.07□□□□□ -0.96
CLN3-203ENST00000357806 Q75L30 129 aa9.07□□□□□ -0.96
CLN3-203ENST00000357806 A0A1B0GV90 55 aa9.06□□□□□ -0.96
CLN3-203ENST00000357806 DEFB116Q30KQ4 102 aa9.05□□□□□ -0.96
CLN3-203ENST00000357806 C14orf132Q9NPU4 83 aa9.05□□□□□ -0.96
CLN3-203ENST00000357806 A0A1B0GW54 56 aa9.04□□□□□ -0.96
CLN3-203ENST00000357806 SPCS1Q9Y6A9 102 aa9.03□□□□□ -0.96
CLN3-203ENST00000357806 DSCR10P59022 87 aa9.02□□□□□ -0.96
CLN3-203ENST00000357806 MTURNQ8N3F0 131 aa9.02□□□□□ -0.96
CLN3-203ENST00000357806 FAT4Q6V0I7 4981 aa9.02□□□□□ -0.97
CLN3-203ENST00000357806 LINC00313P59037 77 aa9.01□□□□□ -0.97
CLN3-203ENST00000357806 ATP11AUNQ6ZP68 121 aa9.01□□□□□ -0.97
CLN3-203ENST00000357806 C20orf166-AS1Q96NR2 134 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms