RNA–Protein interactions for RNA: ENST00000355238.10

SYNCRIP-201, Transcript of synaptotagmin binding cytoplasmic RNA interacting protein, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SYNCRIP, Length 6,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNCRIP-201ENST00000355238 KRTAP1-1Q07627 177 aa7.68□□□□□ -1.18
SYNCRIP-201ENST00000355238 Q6ZSA8 131 aa7.68□□□□□ -1.18
SYNCRIP-201ENST00000355238 H1FX-AS1Q4G0G2 97 aa7.68□□□□□ -1.18
SYNCRIP-201ENST00000355238 SPATA8Q6RVD6 105 aa7.68□□□□□ -1.18
SYNCRIP-201ENST00000355238 MKI67P46013 3256 aaKnown RBP7.66□□□□□ -1.18
SYNCRIP-201ENST00000355238 KRTAP4-16G5E9R7 235 aaPredicted RBP7.62□□□□□ -1.19
SYNCRIP-201ENST00000355238 LCE6AA0A183 80 aa7.61□□□□□ -1.19
SYNCRIP-201ENST00000355238 RANBP2P49792 3224 aaKnown RBP7.6□□□□□ -1.19
SYNCRIP-201ENST00000355238 KRTAP16-1A8MUX0 517 aa7.6□□□□□ -1.19
SYNCRIP-201ENST00000355238 PRRC2CQ9Y520 2896 aaKnown RBP7.6□□□□□ -1.19
SYNCRIP-201ENST00000355238 LAMA2P24043 3122 aaKnown RBP7.58□□□□□ -1.2
SYNCRIP-201ENST00000355238 USP24Q9UPU5 2620 aa7.58□□□□□ -1.2
SYNCRIP-201ENST00000355238 BPTFQ12830 3046 aa7.56□□□□□ -1.2
SYNCRIP-201ENST00000355238 KRTAP25-1Q3LHN0 102 aa7.56□□□□□ -1.2
SYNCRIP-201ENST00000355238 R4GN34 69 aa7.56□□□□□ -1.2
SYNCRIP-201ENST00000355238 FASNP49327 2511 aaKnown RBP7.55□□□□□ -1.2
SYNCRIP-201ENST00000355238 LAMA3Q16787 3333 aa7.52□□□□□ -1.21
SYNCRIP-201ENST00000355238 EPG5Q9HCE0 2579 aa7.51□□□□□ -1.21
SYNCRIP-201ENST00000355238 A0A087X002 238 aa7.48□□□□□ -1.21
SYNCRIP-201ENST00000355238 CHD7Q9P2D1 2997 aa7.47□□□□□ -1.21
SYNCRIP-201ENST00000355238 MGAM2Q2M2H8 2515 aa7.47□□□□□ -1.21
SYNCRIP-201ENST00000355238 KRTAP1-5Q9BYS1 174 aa7.46□□□□□ -1.22
SYNCRIP-201ENST00000355238 ADM2Q7Z4H4 148 aa7.43□□□□□ -1.22
SYNCRIP-201ENST00000355238 CHD9Q3L8U1 2897 aa7.42□□□□□ -1.22
SYNCRIP-201ENST00000355238 PANO1I0J062 215 aa7.42□□□□□ -1.22
SYNCRIP-201ENST00000355238 M0QZ58 72 aa7.42□□□□□ -1.22
SYNCRIP-201ENST00000355238 A8MU10 97 aa7.4□□□□□ -1.22
SYNCRIP-201ENST00000355238 NOTCH2NLQ7Z3S9 236 aa7.39□□□□□ -1.23
SYNCRIP-201ENST00000355238 FLNAP21333 2647 aaKnown RBP7.39□□□□□ -1.23
SYNCRIP-201ENST00000355238 NDUFAF8A1L188 74 aa7.34□□□□□ -1.23
SYNCRIP-201ENST00000355238 C5orf42Q9H799 3197 aa7.33□□□□□ -1.24
SYNCRIP-201ENST00000355238 CDH23Q9H251 3354 aa7.33□□□□□ -1.24
SYNCRIP-201ENST00000355238 TRANK1O15050 2925 aa7.33□□□□□ -1.24
SYNCRIP-201ENST00000355238 ATRQ13535 2644 aa7.33□□□□□ -1.24
SYNCRIP-201ENST00000355238 UNC80Q8N2C7 3258 aa7.31□□□□□ -1.24
SYNCRIP-201ENST00000355238 PRUNE2Q8WUY3 3088 aa7.31□□□□□ -1.24
SYNCRIP-201ENST00000355238 M0R2T5 61 aa7.31□□□□□ -1.24
SYNCRIP-201ENST00000355238 SEC61BP60468 96 aaKnown RBP7.31□□□□□ -1.24
SYNCRIP-201ENST00000355238 ITPR3Q14573 2671 aa7.3□□□□□ -1.24
SYNCRIP-201ENST00000355238 A0A0C4DFX4 3053 aa7.3□□□□□ -1.24
SYNCRIP-201ENST00000355238 FLG2Q5D862 2391 aaPredicted RBP7.29□□□□□ -1.24
SYNCRIP-201ENST00000355238 HECTD1Q9ULT8 2610 aa7.27□□□□□ -1.25
SYNCRIP-201ENST00000355238 KRTAP10-1P60331 282 aa7.26□□□□□ -1.25
SYNCRIP-201ENST00000355238 PLAC4Q8WY50 150 aa7.25□□□□□ -1.25
SYNCRIP-201ENST00000355238 DMBT1Q9UGM3 2413 aaPredicted RBP7.25□□□□□ -1.25
SYNCRIP-201ENST00000355238 RPS29P62273 56 aaKnown RBP7.24□□□□□ -1.25
SYNCRIP-201ENST00000355238 SZT2Q5T011 3432 aa7.23□□□□□ -1.25
SYNCRIP-201ENST00000355238 KRTAP7-1Q8IUC3 87 aa7.23□□□□□ -1.25
SYNCRIP-201ENST00000355238 AKAP13Q12802 2813 aa7.23□□□□□ -1.25
SYNCRIP-201ENST00000355238 KRTAP11-1Q8IUC1 163 aa7.22□□□□□ -1.25
SYNCRIP-201ENST00000355238 TRIOO75962 3097 aa7.22□□□□□ -1.25
SYNCRIP-201ENST00000355238 NBEAL1Q6ZS30 2694 aa7.22□□□□□ -1.25
SYNCRIP-201ENST00000355238 KRTAP10-2P60368 255 aa7.22□□□□□ -1.25
SYNCRIP-201ENST00000355238 A8MUU9 505 aa7.21□□□□□ -1.26
SYNCRIP-201ENST00000355238 CHD6Q8TD26 2715 aa7.19□□□□□ -1.26
SYNCRIP-201ENST00000355238 UNC79Q9P2D8 2635 aa7.17□□□□□ -1.26
SYNCRIP-201ENST00000355238 KRTAP13-1Q8IUC0 172 aa7.17□□□□□ -1.26
SYNCRIP-201ENST00000355238 MAST4O15021 2626 aa7.17□□□□□ -1.26
SYNCRIP-201ENST00000355238 FLNBO75369 2602 aaKnown RBP7.16□□□□□ -1.26
SYNCRIP-201ENST00000355238 XIRP2A4UGR9 3374 aa7.14□□□□□ -1.27
SYNCRIP-201ENST00000355238 C20orf166-AS1Q96NR2 134 aa7.14□□□□□ -1.27
SYNCRIP-201ENST00000355238 GCN1Q92616 2671 aaKnown RBP7.14□□□□□ -1.27
SYNCRIP-201ENST00000355238 Q5VSD8 79 aa7.13□□□□□ -1.27
SYNCRIP-201ENST00000355238 CENPEQ02224 2701 aa7.13□□□□□ -1.27
SYNCRIP-201ENST00000355238 EYSQ5T1H1 3165 aa7.11□□□□□ -1.27
SYNCRIP-201ENST00000355238 STAB1Q9NY15 2570 aa7.1□□□□□ -1.27
SYNCRIP-201ENST00000355238 REV3LO60673 3130 aa7.1□□□□□ -1.27
SYNCRIP-201ENST00000355238 TNRC18O15417 2968 aaPredicted RBP7.1□□□□□ -1.27
SYNCRIP-201ENST00000355238 VCANP13611 3396 aa7.07□□□□□ -1.28
SYNCRIP-201ENST00000355238 CFAP54Q96N23 3096 aa7.07□□□□□ -1.28
SYNCRIP-201ENST00000355238 Q6ZRN7 208 aaPredicted RBP7.07□□□□□ -1.28
SYNCRIP-201ENST00000355238 KRTAP13-2Q52LG2 175 aa7.06□□□□□ -1.28
SYNCRIP-201ENST00000355238 COL6A3P12111 3177 aa7.06□□□□□ -1.28
SYNCRIP-201ENST00000355238 NOTCH1P46531 2555 aa7.03□□□□□ -1.28
SYNCRIP-201ENST00000355238 HELZ2Q9BYK8 2649 aaKnown RBP7.02□□□□□ -1.29
SYNCRIP-201ENST00000355238 CFAP46Q8IYW2 2715 aa7.02□□□□□ -1.29
SYNCRIP-201ENST00000355238 SPTBN5Q9NRC6 3674 aaKnown RBP7□□□□□ -1.29
SYNCRIP-201ENST00000355238 NBEAL2Q6ZNJ1 2754 aa6.97□□□□□ -1.29
SYNCRIP-201ENST00000355238 TNP1P09430 55 aa6.97□□□□□ -1.29
SYNCRIP-201ENST00000355238 PP632Q6XCG6 107 aa6.97□□□□□ -1.29
SYNCRIP-201ENST00000355238 C10orf95Q9H7T3 257 aa6.95□□□□□ -1.3
SYNCRIP-201ENST00000355238 VPS13AQ96RL7 3174 aa6.95□□□□□ -1.3
SYNCRIP-201ENST00000355238 TEX15Q9BXT5 2789 aa6.94□□□□□ -1.3
SYNCRIP-201ENST00000355238 H0YAA0 97 aa6.94□□□□□ -1.3
SYNCRIP-201ENST00000355238 LAMA1P25391 3075 aa6.92□□□□□ -1.3
SYNCRIP-201ENST00000355238 STAB2Q8WWQ8 2551 aa6.92□□□□□ -1.3
SYNCRIP-201ENST00000355238 P0C880 135 aa6.89□□□□□ -1.31
SYNCRIP-201ENST00000355238 MGAQ8IWI9 3026 aa6.89□□□□□ -1.31
SYNCRIP-201ENST00000355238 COL6A5A8TX70 2615 aa6.88□□□□□ -1.31
SYNCRIP-201ENST00000355238 DNAH14Q0VDD8 3507 aa6.88□□□□□ -1.31
SYNCRIP-201ENST00000355238 FRYLO94915 3013 aa6.87□□□□□ -1.31
SYNCRIP-201ENST00000355238 WDFY4Q6ZS81 3184 aa6.87□□□□□ -1.31
SYNCRIP-201ENST00000355238 MUC3AQ02505 3323 aa6.87□□□□□ -1.31
SYNCRIP-201ENST00000355238 TEP1Q99973 2627 aaKnown RBP6.83□□□□□ -1.32
SYNCRIP-201ENST00000355238 ZNF292O60281 2723 aa6.83□□□□□ -1.32
SYNCRIP-201ENST00000355238 SETXQ7Z333 2677 aaKnown RBP6.81□□□□□ -1.32
SYNCRIP-201ENST00000355238 SPEGQ15772 3267 aa6.81□□□□□ -1.32
SYNCRIP-201ENST00000355238 BAHCC1Q9P281 2608 aa6.78□□□□□ -1.32
SYNCRIP-201ENST00000355238 FRYQ5TBA9 3013 aa6.77□□□□□ -1.33
SYNCRIP-201ENST00000355238 ITPR1Q14643 2758 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms