RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 IGLV5-48A0A075B6I7 105 aa9.34□□□□□ -0.91
COL17A1-201ENST00000353479 COX6B2Q6YFQ2 88 aa9.33□□□□□ -0.92
COL17A1-201ENST00000353479 PRO0628Q9UI54 55 aa9.33□□□□□ -0.92
COL17A1-201ENST00000353479 COL12A1Q99715 3063 aa9.33□□□□□ -0.92
COL17A1-201ENST00000353479 Q8NDZ9 215 aa9.3□□□□□ -0.92
COL17A1-201ENST00000353479 PLAC8Q9NZF1 115 aa9.3□□□□□ -0.92
COL17A1-201ENST00000353479 PRR26Q8N8Z3 221 aa9.29□□□□□ -0.92
COL17A1-201ENST00000353479 ITPR1Q14643 2758 aa9.29□□□□□ -0.92
COL17A1-201ENST00000353479 IGLV8-61A0A075B6I0 122 aa9.28□□□□□ -0.92
COL17A1-201ENST00000353479 ITPR2Q14571 2701 aa9.27□□□□□ -0.92
COL17A1-201ENST00000353479 NBEAL2Q6ZNJ1 2754 aa9.27□□□□□ -0.92
COL17A1-201ENST00000353479 C4orf26Q17RF5 130 aa9.25□□□□□ -0.93
COL17A1-201ENST00000353479 TACC2O95359 2948 aa9.25□□□□□ -0.93
COL17A1-201ENST00000353479 ADGRG4Q8IZF6 3080 aa9.25□□□□□ -0.93
COL17A1-201ENST00000353479 EYSQ5T1H1 3165 aa9.24□□□□□ -0.93
COL17A1-201ENST00000353479 COA5Q86WW8 74 aa9.24□□□□□ -0.93
COL17A1-201ENST00000353479 KRTAP26-1Q6PEX3 210 aa9.23□□□□□ -0.93
COL17A1-201ENST00000353479 LRBAP50851 2863 aa9.22□□□□□ -0.93
COL17A1-201ENST00000353479 CD164Q04900 197 aa9.21□□□□□ -0.93
COL17A1-201ENST00000353479 LCE6AA0A183 80 aa9.2□□□□□ -0.94
COL17A1-201ENST00000353479 RPS28P62857 69 aaKnown RBP9.2□□□□□ -0.94
COL17A1-201ENST00000353479 KALRNO60229 2985 aa9.2□□□□□ -0.94
COL17A1-201ENST00000353479 SPRR1AP35321 89 aa9.2□□□□□ -0.94
COL17A1-201ENST00000353479 FREM2Q5SZK8 3169 aa9.2□□□□□ -0.94
COL17A1-201ENST00000353479 UTP20O75691 2785 aaKnown RBP9.19□□□□□ -0.94
COL17A1-201ENST00000353479 KLKP1Q107X0 134 aa9.18□□□□□ -0.94
COL17A1-201ENST00000353479 NBEAL1Q6ZS30 2694 aa9.18□□□□□ -0.94
COL17A1-201ENST00000353479 FAM229BQ4G0N7 80 aa9.18□□□□□ -0.94
COL17A1-201ENST00000353479 REV3LO60673 3130 aa9.17□□□□□ -0.94
COL17A1-201ENST00000353479 DMXL1Q9Y485 3027 aa9.17□□□□□ -0.94
COL17A1-201ENST00000353479 KRTAP10-2P60368 255 aa9.16□□□□□ -0.94
COL17A1-201ENST00000353479 IGLV7-46A0A075B6I9 117 aa9.15□□□□□ -0.94
COL17A1-201ENST00000353479 KRTAP10-1P60331 282 aa9.14□□□□□ -0.95
COL17A1-201ENST00000353479 RBM12B-AS1Q9P1G2 102 aa9.14□□□□□ -0.95
COL17A1-201ENST00000353479 NBEAQ8NFP9 2946 aa9.13□□□□□ -0.95
COL17A1-201ENST00000353479 LINC01600Q96MT4 127 aa9.13□□□□□ -0.95
COL17A1-201ENST00000353479 HIVEP1P15822 2718 aa9.13□□□□□ -0.95
COL17A1-201ENST00000353479 Q8N1X5 172 aa9.12□□□□□ -0.95
COL17A1-201ENST00000353479 SPEGQ15772 3267 aa9.11□□□□□ -0.95
COL17A1-201ENST00000353479 USP34Q70CQ2 3546 aa9.1□□□□□ -0.95
COL17A1-201ENST00000353479 NSD1Q96L73 2696 aaPredicted RBP9.09□□□□□ -0.95
COL17A1-201ENST00000353479 H7BZZ5 65 aa9.09□□□□□ -0.95
COL17A1-201ENST00000353479 A8MUN3 132 aa9.08□□□□□ -0.96
COL17A1-201ENST00000353479 ZZEF1O43149 2961 aa9.07□□□□□ -0.96
COL17A1-201ENST00000353479 Q5VSD8 79 aa9.06□□□□□ -0.96
COL17A1-201ENST00000353479 APCP25054 2843 aa9.06□□□□□ -0.96
COL17A1-201ENST00000353479 Q6ZSA8 131 aa9.06□□□□□ -0.96
COL17A1-201ENST00000353479 Q6ZR54 194 aa9.06□□□□□ -0.96
COL17A1-201ENST00000353479 SPRR1BP22528 89 aa9.05□□□□□ -0.96
COL17A1-201ENST00000353479 PANO1I0J062 215 aa9.04□□□□□ -0.96
COL17A1-201ENST00000353479 OCR1Q9BZK8 76 aa9.03□□□□□ -0.96
COL17A1-201ENST00000353479 UQCR11O14957 56 aa9.01□□□□□ -0.97
COL17A1-201ENST00000353479 CFAP47Q6ZTR5 3102 aa9□□□□□ -0.97
COL17A1-201ENST00000353479 MMP24-AS1A0A0U1RRL7 71 aa8.98□□□□□ -0.97
COL17A1-201ENST00000353479 SPANXA2-OT1Q8N9U9 137 aa8.98□□□□□ -0.97
COL17A1-201ENST00000353479 CYP4F30PQ9H0H9 118 aa8.96□□□□□ -0.98
COL17A1-201ENST00000353479 KMT2BQ9UMN6 2715 aaPredicted RBP8.95□□□□□ -0.98
COL17A1-201ENST00000353479 LINC00472Q9H8W2 130 aa8.94□□□□□ -0.98
COL17A1-201ENST00000353479 MIR22HGQ0VDD5 57 aa8.93□□□□□ -0.98
COL17A1-201ENST00000353479 ZCCHC13Q8WW36 166 aaKnown RBP8.92□□□□□ -0.98
COL17A1-201ENST00000353479 LOC400499M0QZD8 3231 aa8.92□□□□□ -0.98
COL17A1-201ENST00000353479 STAB2Q8WWQ8 2551 aa8.92□□□□□ -0.98
COL17A1-201ENST00000353479 LINC01554Q52M75 96 aa8.91□□□□□ -0.98
COL17A1-201ENST00000353479 CRYBG3Q68DQ2 2970 aa8.91□□□□□ -0.98
COL17A1-201ENST00000353479 HRES1P13985 223 aa8.9□□□□□ -0.98
COL17A1-201ENST00000353479 KRTAP4-16G5E9R7 235 aaPredicted RBP8.89□□□□□ -0.99
COL17A1-201ENST00000353479 ZANQ9Y493 2812 aa8.89□□□□□ -0.99
COL17A1-201ENST00000353479 SPINT4Q6UDR6 99 aa8.89□□□□□ -0.99
COL17A1-201ENST00000353479 LINC00483Q53H64 154 aa8.89□□□□□ -0.99
COL17A1-201ENST00000353479 Q6ZRN7 208 aaPredicted RBP8.89□□□□□ -0.99
COL17A1-201ENST00000353479 Q8N9P0 234 aaPredicted RBP8.86□□□□□ -0.99
COL17A1-201ENST00000353479 MYO15AQ9UKN7 3530 aa8.86□□□□□ -0.99
COL17A1-201ENST00000353479 KRTAP21-3Q3LHN1 58 aa8.85□□□□□ -0.99
COL17A1-201ENST00000353479 A0A0D9SG42 100 aa8.85□□□□□ -0.99
COL17A1-201ENST00000353479 HRNRQ86YZ3 2850 aaPredicted RBP8.84□□□□□ -0.99
COL17A1-201ENST00000353479 TENM4Q6N022 2769 aa8.84□□□□□ -0.99
COL17A1-201ENST00000353479 H3BS24 57 aa8.83□□□□□ -1
COL17A1-201ENST00000353479 ASH1LQ9NR48 2969 aaKnown RBP8.83□□□□□ -1
COL17A1-201ENST00000353479 M0R2T5 61 aa8.83□□□□□ -1
COL17A1-201ENST00000353479 CELSR2Q9HCU4 2923 aa8.81□□□□□ -1
COL17A1-201ENST00000353479 Q5W150 140 aa8.81□□□□□ -1
COL17A1-201ENST00000353479 A0A087X002 238 aa8.81□□□□□ -1
COL17A1-201ENST00000353479 NIPBLQ6KC79 2804 aaeCLIP8.81□□□□□ -1
COL17A1-201ENST00000353479 KRTAP11-1Q8IUC1 163 aa8.8□□□□□ -1
COL17A1-201ENST00000353479 SPINK7P58062 85 aa8.78□□□□□ -1
COL17A1-201ENST00000353479 SEC61BP60468 96 aaKnown RBP8.75□□□□□ -1.01
COL17A1-201ENST00000353479 KRTAP7-1Q8IUC3 87 aa8.74□□□□□ -1.01
COL17A1-201ENST00000353479 DCHS2Q6V1P9 2916 aa8.73□□□□□ -1.01
COL17A1-201ENST00000353479 CRIPTQ9P021 101 aa8.72□□□□□ -1.01
COL17A1-201ENST00000353479 S4R3F8 94 aa8.71□□□□□ -1.02
COL17A1-201ENST00000353479 CSAG1Q6PB30 78 aa8.69□□□□□ -1.02
COL17A1-201ENST00000353479 KTN1-AS1Q86SY8 53 aa8.68□□□□□ -1.02
COL17A1-201ENST00000353479 FP248Q71RG6 208 aaPredicted RBP8.67□□□□□ -1.02
COL17A1-201ENST00000353479 CYSTM1Q9H1C7 97 aa8.66□□□□□ -1.02
COL17A1-201ENST00000353479 A0A1B0GU33 70 aa8.66□□□□□ -1.02
COL17A1-201ENST00000353479 LCA10Q71F78 164 aa8.66□□□□□ -1.02
COL17A1-201ENST00000353479 Q1T7F1 81 aa8.64□□□□□ -1.03
COL17A1-201ENST00000353479 CDC42SE1Q9NRR8 79 aa8.63□□□□□ -1.03
COL17A1-201ENST00000353479 FBN2P35556 2912 aa8.63□□□□□ -1.03
COL17A1-201ENST00000353479 NF1P21359 2839 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms