RNA–Protein interactions for RNA: ENST00000342494.7

UBE3B-202, Transcript of ubiquitin protein ligase E3B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE3B, Length 5,722 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-202ENST00000342494 LINC00483Q53H64 154 aa9.12□□□□□ -0.95
UBE3B-202ENST00000342494 Q8NDZ9 215 aa9.11□□□□□ -0.95
UBE3B-202ENST00000342494 SPINK7P58062 85 aa9.11□□□□□ -0.95
UBE3B-202ENST00000342494 LCA10Q71F78 164 aa9.11□□□□□ -0.95
UBE3B-202ENST00000342494 FLG2Q5D862 2391 aaPredicted RBP9.1□□□□□ -0.95
UBE3B-202ENST00000342494 SPRR1BP22528 89 aa9.1□□□□□ -0.95
UBE3B-202ENST00000342494 COL6A5A8TX70 2615 aa9.09□□□□□ -0.95
UBE3B-202ENST00000342494 KRTAP10-2P60368 255 aa9.09□□□□□ -0.95
UBE3B-202ENST00000342494 PCNTO95613 3336 aa9.09□□□□□ -0.95
UBE3B-202ENST00000342494 CHD6Q8TD26 2715 aa9.07□□□□□ -0.96
UBE3B-202ENST00000342494 NBEAL1Q6ZS30 2694 aa9.07□□□□□ -0.96
UBE3B-202ENST00000342494 R4GN34 69 aa9.06□□□□□ -0.96
UBE3B-202ENST00000342494 Q5W150 140 aa9.06□□□□□ -0.96
UBE3B-202ENST00000342494 LINC00472Q9H8W2 130 aa9.04□□□□□ -0.96
UBE3B-202ENST00000342494 DMAC1Q96GE9 116 aa9.03□□□□□ -0.96
UBE3B-202ENST00000342494 C5orf42Q9H799 3197 aa9.03□□□□□ -0.96
UBE3B-202ENST00000342494 CHD7Q9P2D1 2997 aa9□□□□□ -0.97
UBE3B-202ENST00000342494 KRTAP26-1Q6PEX3 210 aa8.99□□□□□ -0.97
UBE3B-202ENST00000342494 UNC79Q9P2D8 2635 aa8.99□□□□□ -0.97
UBE3B-202ENST00000342494 BAHCC1Q9P281 2608 aa8.96□□□□□ -0.98
UBE3B-202ENST00000342494 Q75L30 129 aa8.94□□□□□ -0.98
UBE3B-202ENST00000342494 FP248Q71RG6 208 aaPredicted RBP8.94□□□□□ -0.98
UBE3B-202ENST00000342494 OXTP01178 125 aa8.94□□□□□ -0.98
UBE3B-202ENST00000342494 LINC01558Q9Y6Z2 57 aa8.94□□□□□ -0.98
UBE3B-202ENST00000342494 NOTCH1P46531 2555 aa8.94□□□□□ -0.98
UBE3B-202ENST00000342494 Q6ZR54 194 aa8.9□□□□□ -0.98
UBE3B-202ENST00000342494 ZNF292O60281 2723 aa8.88□□□□□ -0.99
UBE3B-202ENST00000342494 PANO1I0J062 215 aa8.88□□□□□ -0.99
UBE3B-202ENST00000342494 MGAQ8IWI9 3026 aa8.87□□□□□ -0.99
UBE3B-202ENST00000342494 M0QZ58 72 aa8.86□□□□□ -0.99
UBE3B-202ENST00000342494 GCN1Q92616 2671 aaKnown RBP8.83□□□□□ -1
UBE3B-202ENST00000342494 CHD9Q3L8U1 2897 aa8.82□□□□□ -1
UBE3B-202ENST00000342494 PLAC4Q8WY50 150 aa8.81□□□□□ -1
UBE3B-202ENST00000342494 A0A087X002 238 aa8.8□□□□□ -1
UBE3B-202ENST00000342494 DMBT1Q9UGM3 2413 aaPredicted RBP8.79□□□□□ -1
UBE3B-202ENST00000342494 STAB2Q8WWQ8 2551 aa8.79□□□□□ -1
UBE3B-202ENST00000342494 RPL37P61927 97 aaKnown RBP8.79□□□□□ -1
UBE3B-202ENST00000342494 RANBP2P49792 3224 aaKnown RBP8.76□□□□□ -1.01
UBE3B-202ENST00000342494 KRTAP4-16G5E9R7 235 aaPredicted RBP8.75□□□□□ -1.01
UBE3B-202ENST00000342494 UBR5O95071 2799 aaPredicted RBP8.74□□□□□ -1.01
UBE3B-202ENST00000342494 IGSF10Q6WRI0 2623 aa8.73□□□□□ -1.01
UBE3B-202ENST00000342494 ADM2Q7Z4H4 148 aa8.73□□□□□ -1.01
UBE3B-202ENST00000342494 CFAP54Q96N23 3096 aa8.72□□□□□ -1.01
UBE3B-202ENST00000342494 H1FX-AS1Q4G0G2 97 aa8.71□□□□□ -1.02
UBE3B-202ENST00000342494 Q5VV11 94 aa8.71□□□□□ -1.02
UBE3B-202ENST00000342494 PRAC1Q96KF2 57 aa8.7□□□□□ -1.02
UBE3B-202ENST00000342494 DSPP15924 2871 aaKnown RBP8.69□□□□□ -1.02
UBE3B-202ENST00000342494 CYSTM1Q9H1C7 97 aa8.69□□□□□ -1.02
UBE3B-202ENST00000342494 HTTP42858 3142 aa8.67□□□□□ -1.02
UBE3B-202ENST00000342494 ROMO1P60602 79 aa8.67□□□□□ -1.02
UBE3B-202ENST00000342494 MKI67P46013 3256 aaKnown RBP8.66□□□□□ -1.02
UBE3B-202ENST00000342494 A0A0C4DFX4 3053 aa8.66□□□□□ -1.02
UBE3B-202ENST00000342494 NBEAL2Q6ZNJ1 2754 aa8.66□□□□□ -1.02
UBE3B-202ENST00000342494 Q6ZRN7 208 aaPredicted RBP8.64□□□□□ -1.03
UBE3B-202ENST00000342494 NSD1Q96L73 2696 aaPredicted RBP8.64□□□□□ -1.03
UBE3B-202ENST00000342494 MAP1AP78559 2803 aaPredicted RBP8.64□□□□□ -1.03
UBE3B-202ENST00000342494 BRCA2P51587 3418 aa8.63□□□□□ -1.03
UBE3B-202ENST00000342494 WDFY4Q6ZS81 3184 aa8.62□□□□□ -1.03
UBE3B-202ENST00000342494 RPS29P62273 56 aaKnown RBP8.62□□□□□ -1.03
UBE3B-202ENST00000342494 Q5XG85 94 aa8.62□□□□□ -1.03
UBE3B-202ENST00000342494 SPATA8Q6RVD6 105 aa8.61□□□□□ -1.03
UBE3B-202ENST00000342494 KRTAP29-1A8MX34 341 aaPredicted RBP8.6□□□□□ -1.03
UBE3B-202ENST00000342494 ITPR2Q14571 2701 aa8.59□□□□□ -1.03
UBE3B-202ENST00000342494 A0A0A0MQY5 61 aa8.59□□□□□ -1.03
UBE3B-202ENST00000342494 LAMA3Q16787 3333 aa8.59□□□□□ -1.03
UBE3B-202ENST00000342494 KRTAP11-1Q8IUC1 163 aa8.58□□□□□ -1.04
UBE3B-202ENST00000342494 NOTCH2NLQ7Z3S9 236 aa8.58□□□□□ -1.04
UBE3B-202ENST00000342494 FRYQ5TBA9 3013 aa8.58□□□□□ -1.04
UBE3B-202ENST00000342494 TRANK1O15050 2925 aa8.57□□□□□ -1.04
UBE3B-202ENST00000342494 ASB16-AS1Q495Z4 193 aa8.57□□□□□ -1.04
UBE3B-202ENST00000342494 KRTAP21-3Q3LHN1 58 aa8.56□□□□□ -1.04
UBE3B-202ENST00000342494 PRUNE2Q8WUY3 3088 aa8.51□□□□□ -1.05
UBE3B-202ENST00000342494 KRTAP13-2Q52LG2 175 aa8.49□□□□□ -1.05
UBE3B-202ENST00000342494 C20orf166-AS1Q96NR2 134 aa8.49□□□□□ -1.05
UBE3B-202ENST00000342494 A8MUU9 505 aa8.48□□□□□ -1.05
UBE3B-202ENST00000342494 ITPR1Q14643 2758 aa8.47□□□□□ -1.05
UBE3B-202ENST00000342494 KRTAP7-1Q8IUC3 87 aa8.45□□□□□ -1.06
UBE3B-202ENST00000342494 UNC80Q8N2C7 3258 aa8.44□□□□□ -1.06
UBE3B-202ENST00000342494 LAMA2P24043 3122 aaKnown RBP8.41□□□□□ -1.06
UBE3B-202ENST00000342494 REV3LO60673 3130 aa8.41□□□□□ -1.06
UBE3B-202ENST00000342494 TRIOO75962 3097 aa8.4□□□□□ -1.07
UBE3B-202ENST00000342494 KRTAP13-1Q8IUC0 172 aa8.4□□□□□ -1.07
UBE3B-202ENST00000342494 TENM4Q6N022 2769 aa8.38□□□□□ -1.07
UBE3B-202ENST00000342494 TACC2O95359 2948 aa8.35□□□□□ -1.07
UBE3B-202ENST00000342494 CDH23Q9H251 3354 aa8.34□□□□□ -1.08
UBE3B-202ENST00000342494 A8MU10 97 aa8.32□□□□□ -1.08
UBE3B-202ENST00000342494 HIVEP1P15822 2718 aa8.31□□□□□ -1.08
UBE3B-202ENST00000342494 XIRP2A4UGR9 3374 aa8.31□□□□□ -1.08
UBE3B-202ENST00000342494 H3BS24 57 aa8.3□□□□□ -1.08
UBE3B-202ENST00000342494 KMT2BQ9UMN6 2715 aaPredicted RBP8.29□□□□□ -1.08
UBE3B-202ENST00000342494 FLNCQ14315 2725 aa8.29□□□□□ -1.08
UBE3B-202ENST00000342494 UTP20O75691 2785 aaKnown RBP8.28□□□□□ -1.08
UBE3B-202ENST00000342494 VPS13AQ96RL7 3174 aa8.24□□□□□ -1.09
UBE3B-202ENST00000342494 CRYBG3Q68DQ2 2970 aa8.21□□□□□ -1.1
UBE3B-202ENST00000342494 DMXL2Q8TDJ6 3036 aa8.2□□□□□ -1.1
UBE3B-202ENST00000342494 FREM2Q5SZK8 3169 aa8.2□□□□□ -1.1
UBE3B-202ENST00000342494 TNP1P09430 55 aa8.2□□□□□ -1.1
UBE3B-202ENST00000342494 ATMQ13315 3056 aa8.2□□□□□ -1.1
UBE3B-202ENST00000342494 COL12A1Q99715 3063 aa8.19□□□□□ -1.1
UBE3B-202ENST00000342494 APCP25054 2843 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms